View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2690_high_11 (Length: 241)
Name: NF2690_high_11
Description: NF2690
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2690_high_11 |
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Alignment Details
Target: chr4 (Bit Score: 110; Significance: 1e-55; HSPs: 9)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 18 - 143
Target Start/End: Original strand, 3984320 - 3984445
Alignment:
| Q |
18 |
agtatcacacctatacttctgcaatccccttctggtacgcttcctcaaacattggaaagactatcaaactgcagaacaaaaaactaatatattttaatgg |
117 |
Q |
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| T |
3984320 |
agtatcacaccaatacttctgcaatctccttctggtacgcttcctcaaacattggaaaaactatcaaactgcagaacaaaaaactaatatattttaatgg |
3984419 |
T |
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| Q |
118 |
actgcttatagttgtgttttaaagca |
143 |
Q |
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| T |
3984420 |
actgcttatagttttgttttaaagca |
3984445 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 149 - 241
Target Start/End: Original strand, 3984482 - 3984571
Alignment:
| Q |
149 |
gtaatgttgataactcgaatgttaaccgtggttacttacatcagactataggcttgtgcctaaatcaacttcttcatcttcatcttcatcttc |
241 |
Q |
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| T |
3984482 |
gtaatgttgataactcgaatgttaatcgtggttacttacatcagactaca---ttgtgcctaaatcaacttcttcatcttcatcttcgtcttc |
3984571 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 97 - 143
Target Start/End: Original strand, 4014970 - 4015016
Alignment:
| Q |
97 |
aaaactaatatattttaatggactgcttatagttgtgttttaaagca |
143 |
Q |
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| T |
4014970 |
aaaacaaatatattttaatggactacttatagttttgttttaaagca |
4015016 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 181 - 230
Target Start/End: Complemental strand, 3958088 - 3958039
Alignment:
| Q |
181 |
tacttacatcagactataggcttgtgcctaaatcaacttcttcatcttca |
230 |
Q |
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| T |
3958088 |
tacttacatcaaactatggacttgtgtctaaatcaacttcttcatcttca |
3958039 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 149 - 230
Target Start/End: Complemental strand, 3958220 - 3958139
Alignment:
| Q |
149 |
gtaatgttgataactcgaatgttaaccgtggttacttacatcagactataggcttgtgcctaaatcaacttcttcatcttca |
230 |
Q |
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| T |
3958220 |
gtaatttttataactcgaatgttaagcatgtctacttacatcaaactatagacttctgtgtaaatcaaattcttcatcttca |
3958139 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 149 - 230
Target Start/End: Original strand, 3998450 - 3998531
Alignment:
| Q |
149 |
gtaatgttgataactcgaatgttaaccgtggttacttacatcagactataggcttgtgcctaaatcaacttcttcatcttca |
230 |
Q |
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| T |
3998450 |
gtaatgttggtaactcaactgttaactgtgtctacttgcatcatactatagagttgtgtctaaatcaaattcttcatcttca |
3998531 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 181 - 230
Target Start/End: Original strand, 4022628 - 4022677
Alignment:
| Q |
181 |
tacttacatcagactataggcttgtgcctaaatcaacttcttcatcttca |
230 |
Q |
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| T |
4022628 |
tacttacatcaatctatagacttgtgactaaatcaacttcttcatcttca |
4022677 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 149 - 220
Target Start/End: Original strand, 4015035 - 4015107
Alignment:
| Q |
149 |
gtaatgttgataactcgaatgttaaccgtggttacttacatcagactataggcttg-tgcctaaatcaacttc |
220 |
Q |
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| T |
4015035 |
gtaatgttgagagctcgactgttaaccgtatttacttacatcaaactatagacttgttgtctaaatcaacttc |
4015107 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 80 - 141
Target Start/End: Original strand, 4022494 - 4022555
Alignment:
| Q |
80 |
atcaaactgcagaacaaaaaactaatatattttaatggactgcttatagttgtgttttaaag |
141 |
Q |
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| T |
4022494 |
atcaaactgcataacaaaaattaaatatattgtaatcgactacatatagttgtgttttaaag |
4022555 |
T |
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