View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2690_high_12 (Length: 239)
Name: NF2690_high_12
Description: NF2690
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2690_high_12 |
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Alignment Details
Target: chr5 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 40801302 - 40801081
Alignment:
| Q |
1 |
tttaaggttgtttctccaacctaaattaatgtaacagttgtaatgtaaaattgaaaggagtagatgtacaaagttaccatgttgcaacagtgatgctaac |
100 |
Q |
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| T |
40801302 |
tttaaggttgtttctccaacctaaattaatgtaacagttgtaatgtaaaattgaaaggagtagatgtacaaagttaccatgttgtaacagtgatgctaac |
40801203 |
T |
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| Q |
101 |
ttaccaaatttggagaaatcaaataaaatattatctaagtaaatattcttatacatttcccaattactgatacataaccaccttttatgttaaaggaagt |
200 |
Q |
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| T |
40801202 |
ttaccaaatttggagaaatcaaataaaatattatctaagtaaatattcttatacatttcccaattactgatacgtaaccaccttttatgttaaaggaagt |
40801103 |
T |
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| Q |
201 |
ttgatatttattgagcatcaaa |
222 |
Q |
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| T |
40801102 |
tagatatttattgagcatcaaa |
40801081 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 164; Significance: 9e-88; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 1 - 172
Target Start/End: Original strand, 18701675 - 18701846
Alignment:
| Q |
1 |
tttaaggttgtttctccaacctaaattaatgtaacagttgtaatgtaaaattgaaaggagtagatgtacaaagttaccatgttgcaacagtgatgctaac |
100 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
18701675 |
tttaaggttgtttctccaacgtaaattaatgtaacagttgtaatgtaaaattgaaaggagtagatgtacaaagttaccatgttgcaaaagtgatgctaac |
18701774 |
T |
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| Q |
101 |
ttaccaaatttggagaaatcaaataaaatattatctaagtaaatattcttatacatttcccaattactgata |
172 |
Q |
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| T |
18701775 |
ttaccaaatttggagaaatcaaataaaatattatctaagtaaatattcttatacatttcccaattactgata |
18701846 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 56; Significance: 2e-23; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 2248758 - 2248833
Alignment:
| Q |
1 |
tttaaggttgtttctccaacctaaattaatgtaacagttgtaatgtaaaattgaaaggagtagatgtacaaagtta |
76 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||| ||||||| ||||| |||| ||||||||||||| |
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| T |
2248758 |
tttaaggttgtttctccaacctaaaataatgtaacagttgtaaggtaaaatcgaaagtagtaaatgtacaaagtta |
2248833 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 11 - 134
Target Start/End: Complemental strand, 14138535 - 14138413
Alignment:
| Q |
11 |
tttctccaacctaaattaatgtaacagttgtaatgtaaaattgaaaggagtagatgtacaaagttaccatgttgcaacagtgatgctaacttaccaaatt |
110 |
Q |
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||||||||||||||| || |||||||||||||| |||| || ||||| |||| || || |||||||||||| ||||||| ||| | |||| ||||||| | |
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| T |
14138535 |
tttctccaacctaaaata-tgtaacagttgtaaggtaacatagaaagtagtaaatttagaaagttaccatgctgcaacaatgaaggtaacataccaaagt |
14138437 |
T |
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| Q |
111 |
tggagaaatcaaataaaatattat |
134 |
Q |
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||||||||| |||||||| ||||| |
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| T |
14138436 |
tggagaaattaaataaaagattat |
14138413 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 164 - 223
Target Start/End: Original strand, 2248911 - 2248971
Alignment:
| Q |
164 |
ttactgatacataaccaccttttatgttaaaggaa-gtttgatatttattgagcatcaaac |
223 |
Q |
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|||||||||| |||||||||||| |||||| ||| ||| ||||||||||||||||||||| |
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| T |
2248911 |
ttactgatacgtaaccacctttttcgttaaacgaaagttagatatttattgagcatcaaac |
2248971 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 13 - 76
Target Start/End: Original strand, 24866816 - 24866879
Alignment:
| Q |
13 |
tctccaacctaaattaatgtaacagttgtaatgtaaaattgaaaggagtagatgtacaaagtta |
76 |
Q |
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| T |
24866816 |
tctccaacctaaaataatgtaacagttgtaaggtaaaatagaaagtagtaaatgtacaaagtta |
24866879 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 17882709 - 17882624
Alignment:
| Q |
1 |
tttaaggttgtttctccaacctaaattaatgtaacagttgtaatgtaaaattgaaaggagtagatgtacaaagttaccatgttgcaa |
87 |
Q |
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|||||||||||||||||| | |||| ||||||||||||||||| ||||||| |||| |||| ||||||| |||||||||| ||||| |
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| T |
17882709 |
tttaaggttgtttctcca-cgtaaaataatgtaacagttgtaaggtaaaataaaaagaagtaaatgtacacagttaccatgctgcaa |
17882624 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 11 - 71
Target Start/End: Original strand, 5461361 - 5461421
Alignment:
| Q |
11 |
tttctccaacctaaattaatgtaacagttgtaatgtaaaattgaaaggagtagatgtacaa |
71 |
Q |
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||||||||||||||| ||||| ||||||||||| ||||||| ||||| | || |||||||| |
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| T |
5461361 |
tttctccaacctaaaataatggaacagttgtaaggtaaaatagaaagtaataaatgtacaa |
5461421 |
T |
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