View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2690_high_3 (Length: 463)
Name: NF2690_high_3
Description: NF2690
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2690_high_3 |
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Alignment Details
Target: chr8 (Bit Score: 437; Significance: 0; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 437; E-Value: 0
Query Start/End: Original strand, 19 - 455
Target Start/End: Complemental strand, 34543867 - 34543431
Alignment:
| Q |
19 |
ggatgagcagttgctataggagtttaggagatgaagatggcactcagcttttttctatgtctttgtctgttctttttgcatcaagttgaactctgttatg |
118 |
Q |
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| T |
34543867 |
ggatgagcagttgctataggagtttaggagatgaagatggcactcagcttttttctatgtctttgtctgttctttttgcatcaagttgaactctgttatg |
34543768 |
T |
|
| Q |
119 |
tagtttcagctatttggattatatttattattcactagcactaattctcatactttctcaaaacatcttagcttcttgagtattattagttgagacttta |
218 |
Q |
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| T |
34543767 |
tagtttcagctatttggattatatttattattcactagcactaattctcatactttctcaaaacatcttagcttcttgagtattattagttgagacttta |
34543668 |
T |
|
| Q |
219 |
aaacattgtcattcctatattatgacaagttttctcttctaactctcaatttctttcatagcctgattacttgaggttccctctagttatctggttgtgt |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34543667 |
aaacattgtcattcctatattatgacaagttttctcttctaactctcaatttctttcatagcctgattacttgaggttccctctagttatctggttgtgt |
34543568 |
T |
|
| Q |
319 |
aattgttgctttttaatgcttgctgtcattcattattgagtggttggtattcttgttgcaatttgtgtagcttcattacatggttaaatcattgaacacc |
418 |
Q |
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| T |
34543567 |
aattgttgctttttaatgcttgctgtcattcattattgagtggttggtattcttgttgcaatttgtgtagcttcattacatggttaaatcattgaacacc |
34543468 |
T |
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| Q |
419 |
ttgatgattcaacgctcattggttccgttttcttctc |
455 |
Q |
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| T |
34543467 |
ttgatgattcaacgctcattggttccgttttcttctc |
34543431 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 173 - 379
Target Start/End: Complemental strand, 34914865 - 34914669
Alignment:
| Q |
173 |
ttctcaaaacatcttagcttcttgagtattattagttgagactttaaaacatt-gtcattcctatattatgacaagttttctcttctaactctcaatttc |
271 |
Q |
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| T |
34914865 |
ttctcaaaacattttaccttgttgagtatta---gttgagact--aaaacgtttgtcattcctatattttgacaagt-----cttctaactctcagtttc |
34914776 |
T |
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| Q |
272 |
tttcatagcctgattacttgaggttccctctagttatctggttgtgtaattgttgctttttaatgcttgctgtcattcattattgagtggttggtattct |
371 |
Q |
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| T |
34914775 |
tt-catagcttgataacttgagattccctctagctatctggttgtttgattgttgctttttaatgcttgttgtcattcatcattgagtggttggtcttct |
34914677 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 23 - 170
Target Start/End: Complemental strand, 34915073 - 34914921
Alignment:
| Q |
23 |
gagcagttgctataggagtttaggagatgaagatg----gcactcagcttttttctatgtctttgtctgttcttttt--gcatcaagttgaactctgtta |
116 |
Q |
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| T |
34915073 |
gagcagttgctataggagtctaggagatgaagatgcagagcattcagctctttcatatgtctttgtctgttcttttttgacatcaagttgaactctatta |
34914974 |
T |
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| Q |
117 |
tgtagtttcagctatttggattatatttattattcactagcactaattctcata |
170 |
Q |
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| T |
34914973 |
tctagttttag-tttttggatttcatctattattcactagcactaattctcata |
34914921 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 375 - 458
Target Start/End: Complemental strand, 34914639 - 34914556
Alignment:
| Q |
375 |
tgcaatttgtgtagcttcattacatggttaaatcattgaacaccttgatgattcaacgctcattggttccgttttcttctcact |
458 |
Q |
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| T |
34914639 |
tgcaatttgtgtagcttcattacatggttaaatcattgaacaccttaatgattaaaagctgattggttctgttttcttctcact |
34914556 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 386 - 425
Target Start/End: Original strand, 39851739 - 39851778
Alignment:
| Q |
386 |
tagcttcattacatggttaaatcattgaacaccttgatga |
425 |
Q |
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| T |
39851739 |
tagcttcattacatagttaaatcattgaacaccttgatga |
39851778 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 384 - 425
Target Start/End: Original strand, 44476249 - 44476290
Alignment:
| Q |
384 |
tgtagcttcattacatggttaaatcattgaacaccttgatga |
425 |
Q |
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| T |
44476249 |
tgtagctgcattacatagttaaatcattgaacaccttgatga |
44476290 |
T |
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