View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2690_high_5 (Length: 373)
Name: NF2690_high_5
Description: NF2690
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2690_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 58 - 356
Target Start/End: Original strand, 5051458 - 5051766
Alignment:
| Q |
58 |
tgaaaatccaacaattctcgaatataaggatgattt-atcttgttatattgctgagtttaaggtcgaattttcagcccagaaaactctaggaaatttggt |
156 |
Q |
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| T |
5051458 |
tgaaaatccaacaattctcgaatataaggatgattttatcttgttatattgtcgagtttagggtcgaattttcagcccagaaaactctaggaaatttggt |
5051557 |
T |
|
| Q |
157 |
ttgcaggagtagaaagatggagattggatgacaacgatacgaggagtttatgctttgagataaaattgaagtgctacttttctggtt---ttcttctttc |
253 |
Q |
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| T |
5051558 |
ttgcaggagtagaaagatggagattggatgagaaccatacgaggagtttacgctttgagataaaattgaagtgctacttttctggttttcttcttctttc |
5051657 |
T |
|
| Q |
254 |
atttgttggaccaaagtatattggtgatgaaaaactgatcgttcattgaattggagctgtgagat------taagaagcgctttgcgatggatttgcatc |
347 |
Q |
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| T |
5051658 |
atttgttggaccaaagtatattggtgatgaagaactggccgttcattgaattggagctgtgagattattgctaagaagcgctttgcgatggatttgcatc |
5051757 |
T |
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| Q |
348 |
tcactcctg |
356 |
Q |
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| T |
5051758 |
tcactcctg |
5051766 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 144; Significance: 1e-75; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 2 - 352
Target Start/End: Complemental strand, 51273966 - 51273607
Alignment:
| Q |
2 |
ttgcatacatggtagactctaccatgtatggttttcttgcagagaatcaagccatttgaaaatccaacaattctcgaatataagg-atgatttat-cttg |
99 |
Q |
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|||||||||||||||||||||||| || |||||||||||||||||| |||||||||||||||||| |||||||||||||||||| ||| ||| | |||| |
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| T |
51273966 |
ttgcatacatggtagactctaccacgtgtggttttcttgcagagaaacaagccatttgaaaatccgacaattctcgaatataagacatgtttttttcttg |
51273867 |
T |
|
| Q |
100 |
ttatattgctgagtttaaggtcgaattttcagcccagaaaactctaggaaatttggtttgcaggagtagaaagatggagattggatgacaacgatacgag |
199 |
Q |
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| T |
51273866 |
ttatattgtcaagtttaggatcgaattttcggccaagaaaacacaatgaaatttgattttcaggagtagaaagattgagatttggtgagaacgaaatgag |
51273767 |
T |
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| Q |
200 |
gagtttatgctttgagataaaattgaagtgcta-cttttctggttttc---ttctttcatttgttggaccaaagtatattggtgatgaaaaactgatcgt |
295 |
Q |
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|||||| ||||||||||||||||||||||| | ||||||||||||| ||||||||||||||||| ||||||| |||||||||| || ||||||| |
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| T |
51273766 |
aagtttacgctttgagataaaattgaagtgccattttttctggttttcttgttctttcatttgttggagcaaagta---tggtgatgaagaattgatcgt |
51273670 |
T |
|
| Q |
296 |
tcattgaattggagctgtgagat------taagaagcgctttgcgatggatttgcatctcact |
352 |
Q |
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||| ||||||||||||||||||| |||||| ||||||| |||||||||||| |||||| |
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| T |
51273669 |
tcaatgaattggagctgtgagattaaagctaagaaacgctttgagatggatttgcaactcact |
51273607 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 82; Significance: 1e-38; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 2 - 193
Target Start/End: Complemental strand, 14907995 - 14907802
Alignment:
| Q |
2 |
ttgcatacatggtagactctaccatgtatggttttcttgcagagaatcaagccatttgaaaatccaacaattctcgaatataag-gatgat-ttatcttg |
99 |
Q |
| |
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||||| |||||||||||||||| | || ||||||||||||| |||| ||||||||| ||| ||||||||||||||||||||||| || | || ||||| |
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| T |
14907995 |
ttgcagacatggtagactctactacgtgtggttttcttgcacagaaacaagccattggaagatccaacaattctcgaatataagacattttattttcttg |
14907896 |
T |
|
| Q |
100 |
ttatattgctgagtttaaggtcgaattttcagcccagaaaactctaggaaatttggtttgcaggagtagaaagatggagattggatgacaacga |
193 |
Q |
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|||||||| ||||||| |||||||||||| || ||||||||| || ||||||||||| ||||||||||||||| |||||||| ||| ||||| |
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| T |
14907895 |
ttatattgtcgagtttagggtcgaattttcggcaaagaaaactcaagtaaatttggttttcaggagtagaaagattgagattgggtgagaacga |
14907802 |
T |
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