View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2690_low_11 (Length: 251)

Name: NF2690_low_11
Description: NF2690
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2690_low_11
NF2690_low_11
[»] chr7 (4 HSPs)
chr7 (135-198)||(5908855-5908918)
chr7 (149-219)||(46639838-46639906)
chr7 (166-206)||(3704865-3704905)
chr7 (166-206)||(3698033-3698073)
[»] chr8 (5 HSPs)
chr8 (135-211)||(31475468-31475544)
chr8 (126-219)||(35012124-35012217)
chr8 (143-219)||(34051055-34051131)
chr8 (129-180)||(31475356-31475407)
chr8 (135-198)||(44150854-44150917)
[»] chr5 (4 HSPs)
chr5 (133-213)||(42910628-42910708)
chr5 (133-219)||(616406-616492)
chr5 (154-219)||(8004873-8004938)
chr5 (133-178)||(15390341-15390386)
[»] chr3 (4 HSPs)
chr3 (149-219)||(18373106-18373176)
chr3 (141-180)||(48903720-48903759)
chr3 (134-180)||(48902133-48902179)
chr3 (135-180)||(18373028-18373073)
[»] chr6 (6 HSPs)
chr6 (124-180)||(30364343-30364399)
chr6 (134-199)||(30364248-30364314)
chr6 (134-211)||(5281052-5281128)
chr6 (133-180)||(27990094-27990141)
chr6 (150-211)||(5179253-5179314)
chr6 (159-215)||(8479634-8479690)
[»] scaffold0294 (1 HSPs)
scaffold0294 (134-211)||(2741-2818)
[»] chr2 (1 HSPs)
chr2 (133-173)||(10226877-10226917)
[»] chr1 (1 HSPs)
chr1 (156-184)||(35632628-35632656)


Alignment Details
Target: chr7 (Bit Score: 52; Significance: 6e-21; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 135 - 198
Target Start/End: Original strand, 5908855 - 5908918
Alignment:
Q  135 attctctcaagtgaaattctctccatttttctcaattgttacatctcaaccatacactcaatat 198  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||| || |||||||||||    
T  5908855 attctctcaagtgaaattctcttcatttttctcaattgttacatctcaatcacacactcaatat 5908918  T

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Target: chr7; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 149 - 219
Target Start/End: Original strand, 46639838 - 46639906
Alignment:
Q  149 aattctctccatttttctcaattgttacatctcaaccatacactcaatatcctcttttatttataatatta 219  Q
    ||||||||||  |||||||||||| |||||||||||||  |||||||||||||||||| ||||||||||||    
T  46639838 aattctctcc--ttttctcaattgctacatctcaaccacgcactcaatatcctcttttctttataatatta 46639906  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 166 - 206
Target Start/End: Original strand, 3704865 - 3704905
Alignment:
Q  166 tcaattgttacatctcaaccatacactcaatatcctctttt 206  Q
    |||||| ||||||||||||||||||||||||||||| ||||    
T  3704865 tcaattattacatctcaaccatacactcaatatcctatttt 3704905  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 166 - 206
Target Start/End: Original strand, 3698033 - 3698073
Alignment:
Q  166 tcaattgttacatctcaaccatacactcaatatcctctttt 206  Q
    ||||||||||||| ||||||| |||||||||||||| ||||    
T  3698033 tcaattgttacatatcaaccacacactcaatatcctttttt 3698073  T

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Target: chr8 (Bit Score: 49; Significance: 4e-19; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 135 - 211
Target Start/End: Complemental strand, 31475544 - 31475468
Alignment:
Q  135 attctctcaagtgaaattctctccatttttctcaattgttacatctcaaccatacactcaatatcctcttttattta 211  Q
    ||||||| | |||||||||||||||||||||| || ||||| |||||||||| ||| ||||||||||||||||||||    
T  31475544 attctctgatgtgaaattctctccatttttcttaaatgttaaatctcaaccacacattcaatatcctcttttattta 31475468  T

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Target: chr8; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 126 - 219
Target Start/End: Complemental strand, 35012217 - 35012124
Alignment:
Q  126 tgagaacggattctctcaagtgaaattctctccatttttctcaattgttacatctcaaccatacactcaatatcctcttttatttataatatta 219  Q
    |||||| ||||||||| || || |||| ||||||||||||||||| ||| || |||||||| ||||||||||||||||  | ||||||||||||    
T  35012217 tgagaatggattctcttaaatggaattatctccatttttctcaatcgtttcagctcaaccacacactcaatatcctctaatctttataatatta 35012124  T

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Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 143 - 219
Target Start/End: Original strand, 34051055 - 34051131
Alignment:
Q  143 aagtgaaattctctccatttttctcaattgttacatctcaaccatacactcaatatcctcttttatttataatatta 219  Q
    ||||||||||||||| |||||||| ||||||| |||||||||| |||| | |||||  |||||| ||||||||||||    
T  34051055 aagtgaaattctctctatttttcttaattgtttcatctcaaccttacattaaatattatcttttctttataatatta 34051131  T

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Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 129 - 180
Target Start/End: Original strand, 31475356 - 31475407
Alignment:
Q  129 gaacggattctctcaagtgaaattctctccatttttctcaattgttacatct 180  Q
    |||| ||||||||||||||||||| |||| ||||||||||||||||| ||||    
T  31475356 gaacagattctctcaagtgaaattttctctatttttctcaattgttatatct 31475407  T

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Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 135 - 198
Target Start/End: Original strand, 44150854 - 44150917
Alignment:
Q  135 attctctcaagtgaaattctctccatttttctcaattgttacatctcaaccatacactcaatat 198  Q
    ||||||||| ||| |||| | ||||||||||| ||||||||||||||||| ||||||| |||||    
T  44150854 attctctcaggtggaattttatccatttttcttaattgttacatctcaacaatacacttaatat 44150917  T

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Target: chr5 (Bit Score: 49; Significance: 4e-19; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 133 - 213
Target Start/End: Original strand, 42910628 - 42910708
Alignment:
Q  133 ggattctctcaagtgaaattctctccatttttctcaattgttacatctcaaccatacactcaatatcctcttttatttata 213  Q
    |||||||||  |||||||||||||||||||||| || ||||||||||||||||| ||| ||| ||||||||||| ||||||    
T  42910628 ggattctcttgagtgaaattctctccatttttcacatttgttacatctcaaccacacattcattatcctcttttctttata 42910708  T

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Target: chr5; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 133 - 219
Target Start/End: Original strand, 616406 - 616492
Alignment:
Q  133 ggattctctcaagtgaaattctctccatttttctcaattgttacatctcaaccatacactcaatatcctcttttatttataatatta 219  Q
    ||||| ||||| ||||| |||| || |||||||||||||||||||||| | ||| |||||||||||||||| || ||||||||||||    
T  616406 ggattttctcaggtgaatttctttctatttttctcaattgttacatcttagccacacactcaatatcctctcttttttataatatta 616492  T

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Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 154 - 219
Target Start/End: Complemental strand, 8004938 - 8004873
Alignment:
Q  154 tctccatttttctcaattgttacatctcaaccatacactcaatatcctcttttatttataatatta 219  Q
    |||||||||| ||| |||||||||||||||||| |||||||||||| | |||| ||||||||||||    
T  8004938 tctccattttactcgattgttacatctcaaccacacactcaatatcttattttctttataatatta 8004873  T

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Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 133 - 178
Target Start/End: Complemental strand, 15390386 - 15390341
Alignment:
Q  133 ggattctctcaagtgaaattctctccatttttctcaattgttacat 178  Q
    ||||||||||||||  |||| |||||||||||||||||||||||||    
T  15390386 ggattctctcaagtataattttctccatttttctcaattgttacat 15390341  T

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Target: chr3 (Bit Score: 47; Significance: 6e-18; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 149 - 219
Target Start/End: Complemental strand, 18373176 - 18373106
Alignment:
Q  149 aattctctccatttttctcaattgttacatctcaaccatacactcaatatcctcttttatttataatatta 219  Q
    |||||||||| |||||||||||||||||||||||||||  |||||| ||||||||||  ||||||||||||    
T  18373176 aattctctccttttttctcaattgttacatctcaaccacgcactcattatcctctttactttataatatta 18373106  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 141 - 180
Target Start/End: Original strand, 48903720 - 48903759
Alignment:
Q  141 tcaagtgaaattctctccatttttctcaattgttacatct 180  Q
    ||||| ||||||||||| ||||||||||||||||||||||    
T  48903720 tcaagcgaaattctctcaatttttctcaattgttacatct 48903759  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 134 - 180
Target Start/End: Original strand, 48902133 - 48902179
Alignment:
Q  134 gattctctcaagtgaaattctctccatttttctcaattgttacatct 180  Q
    |||| ||||||| ||||||||||| |||||||| |||||||||||||    
T  48902133 gattatctcaagcgaaattctctcaatttttcttaattgttacatct 48902179  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 135 - 180
Target Start/End: Original strand, 18373028 - 18373073
Alignment:
Q  135 attctctcaagtgaaattctctccatttttctcaattgttacatct 180  Q
    ||||| ||||||| |||| | |||||||||||||||||||||||||    
T  18373028 attctttcaagtggaattttttccatttttctcaattgttacatct 18373073  T

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Target: chr6 (Bit Score: 45; Significance: 1e-16; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 124 - 180
Target Start/End: Complemental strand, 30364399 - 30364343
Alignment:
Q  124 actgagaacggattctctcaagtgaaattctctccatttttctcaattgttacatct 180  Q
    |||| ||| |||||||||||||||||||| |||||||||||||||||||||||||||    
T  30364399 actgggaatggattctctcaagtgaaattttctccatttttctcaattgttacatct 30364343  T

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Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 134 - 199
Target Start/End: Original strand, 30364248 - 30364314
Alignment:
Q  134 gattctctcaagtgaaattctctccatttt-tctcaattgttacatctcaaccatacactcaatatc 199  Q
    |||||||||||||| ||||||||| ||||| ||||||||||||||||||||||| ||| | ||||||    
T  30364248 gattctctcaagtgtaattctctcaattttttctcaattgttacatctcaaccacacatttaatatc 30364314  T

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Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 134 - 211
Target Start/End: Original strand, 5281052 - 5281128
Alignment:
Q  134 gattctctcaagtgaaattctctccatttttctcaattgttacatctcaaccatacactcaatatcctcttttattta 211  Q
    |||||||||||||| | ||||||| ||||||||||||||||||||||||||||  || | ||||| ||||||| ||||    
T  5281052 gattctctcaagtgta-ttctctcaatttttctcaattgttacatctcaaccacgcatttaatattctcttttcttta 5281128  T

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Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 133 - 180
Target Start/End: Complemental strand, 27990141 - 27990094
Alignment:
Q  133 ggattctctcaagtgaaattctctccatttttctcaattgttacatct 180  Q
    |||||||||||||||||||||||| |||||||||||||| || |||||    
T  27990141 ggattctctcaagtgaaattctcttcatttttctcaattattgcatct 27990094  T

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Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 150 - 211
Target Start/End: Original strand, 5179253 - 5179314
Alignment:
Q  150 attctctccatttttctcaattgttacatctcaaccatacactcaatatcctcttttattta 211  Q
    |||||||| ||||||||||||||||||||||||||||  || | ||||| ||||||| ||||    
T  5179253 attctctcaatttttctcaattgttacatctcaaccacgcatttaatattctcttttcttta 5179314  T

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Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 159 - 215
Target Start/End: Complemental strand, 8479690 - 8479634
Alignment:
Q  159 atttttctcaattgttacatctcaaccatacactcaatatcctcttttatttataat 215  Q
    |||||||||||||| ||||||||||||| ||||  |||||  | |||||||||||||    
T  8479690 atttttctcaattggtacatctcaaccacacacataatattgtattttatttataat 8479634  T

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Target: scaffold0294 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0294
Description:

Target: scaffold0294; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 134 - 211
Target Start/End: Complemental strand, 2818 - 2741
Alignment:
Q  134 gattctctcaagtgaaattctctccatttttctcaattgttacatctcaaccatacactcaatatcctcttttattta 211  Q
    |||||||||||||| | ||||||| |||||||||||||||||||| ||||||| ||| | ||||| ||||||| ||||    
T  2818 gattctctcaagtgtatttctctcaatttttctcaattgttacatttcaaccacacatttaatattctcttttcttta 2741  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 133 - 173
Target Start/End: Original strand, 10226877 - 10226917
Alignment:
Q  133 ggattctctcaagtgaaattctctccatttttctcaattgt 173  Q
    |||||||||||||||||||  ||||||||||||| ||||||    
T  10226877 ggattctctcaagtgaaatattctccatttttcttaattgt 10226917  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 184
Target Start/End: Original strand, 35632628 - 35632656
Alignment:
Q  156 tccatttttctcaattgttacatctcaac 184  Q
    |||||||||||||||||||||||||||||    
T  35632628 tccatttttctcaattgttacatctcaac 35632656  T

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