View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2690_low_14 (Length: 234)
Name: NF2690_low_14
Description: NF2690
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2690_low_14 |
 | |
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| [»] scaffold0032 (1 HSPs) |
| | |
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| [»] scaffold0111 (1 HSPs) |
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| [»] scaffold0416 (1 HSPs) |
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| [»] scaffold0093 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 198; Significance: 1e-108; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 214
Target Start/End: Original strand, 10708426 - 10708639
Alignment:
| Q |
1 |
taaagggtcaccttgtcggacaccacgagaacaagagaaaaaacccactggcttaccattcaccaaaatagaaagtctagctgagtgcaaaatagcaaga |
100 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
10708426 |
taaagggtcaccttgtcggacactacgagaacaagagaaaaaacccactgccttaccattcaccaaaatagaaagtctagctgagtgcaaaatagcaaga |
10708525 |
T |
|
| Q |
101 |
atccagtcggtaaacagagaagaaaaaccaaactttcggagcaccacaaccagaaagttccaattcaacgtatcgaaggcttttttaatatcaactttca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| |
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|
| T |
10708526 |
atccagtcggtaaacagagaagaaaaaccaaactttcggagcaccacaaccagaaagttccaatccaacgtattgaaggcttttttaatatcaactttca |
10708625 |
T |
|
| Q |
201 |
aagccacattgcca |
214 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
10708626 |
aagccacattgcca |
10708639 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 214
Target Start/End: Original strand, 10922196 - 10922409
Alignment:
| Q |
1 |
taaagggtcaccttgtcggacaccacgagaacaagagaaaaaacccactggcttaccattcaccaaaatagaaagtctagctgagtgcaaaatagcaaga |
100 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
10922196 |
taaagggtcaccttgtcggacactacgagaacaagagaaaaaacccactgccttaccattcaccaaaatagaaagtctagctgagtgcaaaatagcaaga |
10922295 |
T |
|
| Q |
101 |
atccagtcggtaaacagagaagaaaaaccaaactttcggagcaccacaaccagaaagttccaattcaacgtatcgaaggcttttttaatatcaactttca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| |
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|
| T |
10922296 |
atccagtcggtaaacagagaagaaaaaccaaactttcggagcaccacaaccagaaagttccaatccaacgtattgaaggcttttttaatatcaactttca |
10922395 |
T |
|
| Q |
201 |
aagccacattgcca |
214 |
Q |
| |
|
|||||||||||||| |
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|
| T |
10922396 |
aagccacattgcca |
10922409 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 115; Significance: 1e-58; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 1 - 171
Target Start/End: Original strand, 41247877 - 41248046
Alignment:
| Q |
1 |
taaagggtcaccttgtcggacaccacgagaacaagagaaaaaacccactggcttaccattcaccaaaatagaaagtctagctgagtgcaaaatagcaaga |
100 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||| || ||||||||||||||||||||| |
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|
| T |
41247877 |
taaagggtcaccttgtcagacaccacgagaacaagagaaaaaacccactgtcttaccattcaccaaaatagaaagcctggctgagtgcaaaatagcaaga |
41247976 |
T |
|
| Q |
101 |
atccagtcggtaaacagagaagaaaaaccaaactttcggagcaccacaaccagaaagttccaattcaacgt |
171 |
Q |
| |
|
|| ||||||||||||| |||||||||||||||||| || |||||| | ||| ||||||||||| |||||| |
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|
| T |
41247977 |
attcagtcggtaaacatagaagaaaaaccaaacttccgaagcaccgcggcca-aaagttccaatccaacgt |
41248046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 44377918 - 44377826
Alignment:
| Q |
1 |
taaagggtcaccttgtcggacaccacgagaacaagagaaaaaacccactggcttaccattcaccaaaatagaaagtctagctgagtgcaaaat |
93 |
Q |
| |
|
||||||||| ||||| || |||||||| ||||||||| |||||||| | || ||||||||||||||||| ||||| || ||||| ||||| |
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|
| T |
44377918 |
taaagggtctccttgacgaacaccacggacacaagagaagaaacccaccgctttgccattcaccaaaatagagagtcttgccgagtgtaaaat |
44377826 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 44393498 - 44393406
Alignment:
| Q |
1 |
taaagggtcaccttgtcggacaccacgagaacaagagaaaaaacccactggcttaccattcaccaaaatagaaagtctagctgagtgcaaaat |
93 |
Q |
| |
|
||||||||| ||||| || |||||||| ||||||||| |||||||| | || ||||||||||||||||| ||||| || ||||| ||||| |
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|
| T |
44393498 |
taaagggtctccttgacgaacaccacggacacaagagaagaaacccaccgctttgccattcaccaaaatagagagtcttgccgagtgtaaaat |
44393406 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0032 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: scaffold0032
Description:
Target: scaffold0032; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 17 - 214
Target Start/End: Complemental strand, 125782 - 125585
Alignment:
| Q |
17 |
cggacaccacgagaacaagagaaaaaacccactggcttaccattcaccaaaatagaaagtctagctgagtgcaaaatagcaagaatccagtcggtaaaca |
116 |
Q |
| |
|
||||| |||| |||||||| ||||| ||||| | ||||| |||||||||||||||||| ||||||||||||||||||||||| ||||||| ||||||| |
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|
| T |
125782 |
cggacgccacaagaacaagtaaaaaatcccaccgccttacgattcaccaaaatagaaagcctagctgagtgcaaaatagcaaggatccagttcgtaaaca |
125683 |
T |
|
| Q |
117 |
gagaagaaaaaccaaactttcggagcaccacaaccagaaagttccaattcaacgtatcgaaggcttttttaatatcaactttcaaagccacattgcca |
214 |
Q |
| |
|
|||||||||| || ||| |||| | |||||| ||| ||||||| ||||| || || | |||||||||||||| |||||||||||||||||| |
|
|
| T |
125682 |
ccaaagaaaaaccgaatttttttagcatcgcaaccaaaaaattccaatctaacgtgtcaaatacctttttaatatcaaccttcaaagccacattgcca |
125585 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0111 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: scaffold0111
Description:
Target: scaffold0111; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 4 - 213
Target Start/End: Original strand, 43649 - 43858
Alignment:
| Q |
4 |
agggtcaccttgtcggacaccacgagaacaagagaaaaaacccactggcttaccattcaccaaaatagaaagtctagctgagtgcaaaatagcaagaatc |
103 |
Q |
| |
|
|||||| || |||||||| |||||||||||| ||| || ||||||| ||||||||||||||| ||||| || | |||||| | || |||||||||||| |
|
|
| T |
43649 |
agggtccccctgtcggactccacgagaacaattgaagaatcccactgccttaccattcaccaagatagagagccgagctgaatataagatagcaagaatc |
43748 |
T |
|
| Q |
104 |
cagtcggtaaacagagaagaaaaaccaaactttcggagcaccacaaccagaaagttccaattcaacgtatcgaaggcttttttaatatcaactttcaaag |
203 |
Q |
| |
|
||||| ||||||| | || |||||||| |||| ||||||| | | || || || |||| ||||||| | ||||| ||||||||||| |||| ||| | |
|
|
| T |
43749 |
cagtcagtaaacaaatgtgagaaaccaaattttctgagcaccgctatcaagaaatttcaatccaacgtaacaaaggcctttttaatatcgacttacaatg |
43848 |
T |
|
| Q |
204 |
ccacattgcc |
213 |
Q |
| |
|
|||||||||| |
|
|
| T |
43849 |
ccacattgcc |
43858 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 53; Significance: 1e-21; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 1 - 213
Target Start/End: Original strand, 21490212 - 21490424
Alignment:
| Q |
1 |
taaagggtcaccttgtcggacaccacgagaacaagagaaaaaacccactggcttaccattcaccaaaatagaaagtctagctgagtgcaaaatagcaaga |
100 |
Q |
| |
|
||||||||| || | |||||| || ||||||||| ||| || ||||||| ||||||||||||||| || || || | |||||| || || |||||||| |
|
|
| T |
21490212 |
taaagggtccccctatcggactccccgagaacaattgaagaatcccactgccttaccattcaccaagatggagagccgagctgaatgtaagatagcaagt |
21490311 |
T |
|
| Q |
101 |
atccagtcggtaaacagagaagaaaaaccaaactttcggagcaccacaaccagaaagttccaattcaacgtatcgaaggcttttttaatatcaactttca |
200 |
Q |
| |
|
|||||||| ||||||| | || |||||||| |||| ||||||| | | || || ||||||| ||| ||||| ||||| ||||||||||| ||||| | |
|
|
| T |
21490312 |
atccagtcagtaaacaaatgtgagaaaccaaattttctgagcaccgctatcaagaaattccaatccaatgtatcaaaggcctttttaatatcgactttta |
21490411 |
T |
|
| Q |
201 |
aagccacattgcc |
213 |
Q |
| |
|
| ||||||||||| |
|
|
| T |
21490412 |
atgccacattgcc |
21490424 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0416 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0416
Description:
Target: scaffold0416; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 134
Target Start/End: Complemental strand, 12525 - 12392
Alignment:
| Q |
1 |
taaagggtcaccttgtcggacaccacgagaacaagagaaaaaacccactggcttaccattcaccaaaatagaaagtctagctgagtgcaaaatagcaaga |
100 |
Q |
| |
|
||||||||| ||||| || |||||||| ||||||||| || |||| | ||| ||||||||||||||||||||||| || ||||| ||||| || | | |
|
|
| T |
12525 |
taaagggtccccttgacgaacaccacggacacaagagaagaaccccagcgccttgccattcaccaaaatagaaagtctggccgagtgtaaaattgccaaa |
12426 |
T |
|
| Q |
101 |
atccagtcggtaaacagagaagaaaaaccaaact |
134 |
Q |
| |
|
||||| | || || | ||||||||||||||||| |
|
|
| T |
12425 |
atccaattggagaaaacagaagaaaaaccaaact |
12392 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0093 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0093
Description:
Target: scaffold0093; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 20 - 72
Target Start/End: Complemental strand, 13710 - 13658
Alignment:
| Q |
20 |
acaccacgagaacaagagaaaaaacccactggcttaccattcaccaaaataga |
72 |
Q |
| |
|
||||||||||| ||||||||||||||||||| ||| |||||||| |||||||| |
|
|
| T |
13710 |
acaccacgagagcaagagaaaaaacccactgcctttccattcactaaaataga |
13658 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 5 - 72
Target Start/End: Complemental strand, 12161224 - 12161157
Alignment:
| Q |
5 |
gggtcaccttgtcggacaccacgagaacaagagaaaaaacccactggcttaccattcaccaaaataga |
72 |
Q |
| |
|
||||| |||||||| ||||||| ||||||||||||||||||||| | || |||||||||||||||| |
|
|
| T |
12161224 |
gggtctccttgtcgaacaccacaagaacaagagaaaaaacccaccgcttttgcattcaccaaaataga |
12161157 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 5 - 72
Target Start/End: Complemental strand, 15157235 - 15157168
Alignment:
| Q |
5 |
gggtcaccttgtcggacaccacgagaacaagagaaaaaacccactggcttaccattcaccaaaataga |
72 |
Q |
| |
|
||||| |||||||| ||||||| ||||||||||||||||||||| | || |||||||||||||||| |
|
|
| T |
15157235 |
gggtctccttgtcgaacaccacaagaacaagagaaaaaacccaccgcttttgcattcaccaaaataga |
15157168 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 5 - 75
Target Start/End: Complemental strand, 19178181 - 19178111
Alignment:
| Q |
5 |
gggtcaccttgtcggacaccacgagaacaagagaaaaaacccactggcttaccattcaccaaaatagaaag |
75 |
Q |
| |
|
||||| ||||| |||||||| || || ||||| || |||||||| | |||||||||||||||||||||||| |
|
|
| T |
19178181 |
gggtctccttgacggacaccgcgggagcaagaaaagaaacccaccgccttaccattcaccaaaatagaaag |
19178111 |
T |
|
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