View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2690_low_2 (Length: 552)
Name: NF2690_low_2
Description: NF2690
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2690_low_2 |
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| [»] scaffold0039 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 345; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 145 - 545
Target Start/End: Complemental strand, 18701527 - 18701127
Alignment:
| Q |
145 |
aatctgcttattttgttctaaataatatttcagaaacacaataactgagagcaatatatagataccagagggattatagtttcttaaggaatggcctgaa |
244 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| ||| |||||||||||||||||||||| |
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| T |
18701527 |
aatctgcttattttgttctaaataatatttcagaaacacaataactcagagcgatatatagataccagagggaatattgtttcttaaggaatggcctgaa |
18701428 |
T |
|
| Q |
245 |
acaaagtaataacaaaaatatgaagaaatacataatatcaacggagcatcacaacaatgtttctgtaatggaaaaactaagattgtgatatttgatatag |
344 |
Q |
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| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||| |
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| T |
18701427 |
atagagtaataacaaaaatatgaagaaatacataatatcaacggagcatcacaacaatgtttttgtaatggaaaatctaagattgtgatatttgatatag |
18701328 |
T |
|
| Q |
345 |
gcagcaggactatgaaagccacatagagttggtgttggaacgttggtctttctcctttgaggaagagaaatgagaaaaggggaaggtttgtcgtccttgg |
444 |
Q |
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||||||||||||||||||||||||||||| |||||| ||||||||||||||||| | |||||||||||||||||||||||||| |||||||||||||||| |
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| T |
18701327 |
gcagcaggactatgaaagccacatagagtcggtgttagaacgttggtctttctcttgtgaggaagagaaatgagaaaaggggatggtttgtcgtccttgg |
18701228 |
T |
|
| Q |
445 |
ccaccgacgaaaagtatcaatgtgcatcaaggttctaccattaatcaagaagaaagtgttcaaaatgattttctatttcatactatgatcaagtataatc |
544 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18701227 |
ccaccggcgaaaagtatcaatgtgcatcaaggttctaccattaatcaagaagaaagtgttcaaaatgattttctatttcatactatgatcaagtataatc |
18701128 |
T |
|
| Q |
545 |
t |
545 |
Q |
| |
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| |
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|
| T |
18701127 |
t |
18701127 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 18701685 - 18701578
Alignment:
| Q |
1 |
acaaccttaaagagtgaaaattggtgtcagtgttgagtaactgccatcaattaagatacacagagaggtttcgtaatagttttaaatgtatgctacaaga |
100 |
Q |
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||||||||||||||||||||||||||||| ||| ||||||||||||| | ||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
18701685 |
acaaccttaaagagtgaaaattggtgtcaatgtggagtaactgccattagctaagatacacagagaggtttcctaatagttttaaatgtatgctacaaga |
18701586 |
T |
|
| Q |
101 |
atttaatt |
108 |
Q |
| |
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||| |||| |
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| T |
18701585 |
attcaatt |
18701578 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 327; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 195 - 545
Target Start/End: Original strand, 40801555 - 40801905
Alignment:
| Q |
195 |
gcaatatatagataccagagggattatagtttcttaaggaatggcctgaaacaaagtaataacaaaaatatgaagaaatacataatatcaacggagcatc |
294 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40801555 |
gcaatatatagataccagagggattatagtttcttaaggaatggcctgaaacagagtaataacaaaaatatgaagaaatacataatatcaacggagcatc |
40801654 |
T |
|
| Q |
295 |
acaacaatgtttctgtaatggaaaaactaagattgtgatatttgatataggcagcaggactatgaaagccacatagagttggtgttggaacgttggtctt |
394 |
Q |
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|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40801655 |
acaacaatgtttttgtaatggaaaaactaagattgtgatatttgatataggcagcaggactatgaaagccacatagagttggtgttggaacgttggtctt |
40801754 |
T |
|
| Q |
395 |
tctcctttgaggaagagaaatgagaaaaggggaaggtttgtcgtccttggccaccgacgaaaagtatcaatgtgcatcaaggttctaccattaatcaaga |
494 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||| || ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40801755 |
tctcctttgaggaagagaaatgagaaaaggggaaggtttgtcgtcattggccatcggcgaaaagtatcaatgtgcatcaaggttctaccattaatcaaga |
40801854 |
T |
|
| Q |
495 |
agaaagtgttcaaaatgattttctatttcatactatgatcaagtataatct |
545 |
Q |
| |
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| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40801855 |
aaaaagtgttcaaaatgattttctatttcatactatgatcaagtataatct |
40801905 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 1 - 118
Target Start/End: Original strand, 40801292 - 40801409
Alignment:
| Q |
1 |
acaaccttaaagagtgaaaattggtgtcagtgttgagtaactgccatcaattaagatacacagagaggtttcgtaatagttttaaatgtatgctacaaga |
100 |
Q |
| |
|
||||||||||||||||||||||||||||| ||| |||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
40801292 |
acaaccttaaagagtgaaaattggtgtcaatgtggagtaactgccatcaactaagatacacagagaggtttcttaatagttttaaatgtatgctacaaga |
40801391 |
T |
|
| Q |
101 |
atttaattgtaacaaggg |
118 |
Q |
| |
|
|||||||||||||||||| |
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| T |
40801392 |
atttaattgtaacaaggg |
40801409 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 76 - 118
Target Start/End: Original strand, 40801438 - 40801480
Alignment:
| Q |
76 |
atagttttaaatgtatgctacaagaatttaattgtaacaaggg |
118 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||| |
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| T |
40801438 |
atagttttaaatgtatactacaagaatttaattgtaacaaggg |
40801480 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 76 - 118
Target Start/End: Original strand, 40801509 - 40801551
Alignment:
| Q |
76 |
atagttttaaatgtatgctacaagaatttaattgtaacaaggg |
118 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||| |
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| T |
40801509 |
atagttttaaatgtatactacaagaatttaattgtaacaaggg |
40801551 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 139; Significance: 2e-72; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 395 - 545
Target Start/End: Original strand, 23126087 - 23126237
Alignment:
| Q |
395 |
tctcctttgaggaagagaaatgagaaaaggggaaggtttgtcgtccttggccaccgacgaaaagtatcaatgtgcatcaaggttctaccattaatcaaga |
494 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23126087 |
tctcctttgaggaagagaaatgagaaaaggggaaggtttgtcgtccttggccaccggcgaaaagtatcaatgtgcatcaaggttctaccattaatcaaga |
23126186 |
T |
|
| Q |
495 |
agaaagtgttcaaaatgattttctatttcatactatgatcaagtataatct |
545 |
Q |
| |
|
||||||| |||||||||||||||||||||||| |||||||||||||||||| |
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|
| T |
23126187 |
agaaagtattcaaaatgattttctatttcatattatgatcaagtataatct |
23126237 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 211 - 384
Target Start/End: Complemental strand, 5461196 - 5461023
Alignment:
| Q |
211 |
agagggattatagtttcttaaggaatggcctgaaacaaagtaataacaaaaatatgaagaaatacataatatcaacggagcatcacaacaatgtttctgt |
310 |
Q |
| |
|
||||||||||| ||||||| ||||||| || ||||||||| || | ||||||| |||||||| | |||| ||||||| | |||||| |||| ||| |
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| T |
5461196 |
agagggattatggtttcttgaggaatgtcccgaaacaaagagatcaaaaaaataggaagaaatttggattatcgacggagctttgcaacaacgtttttgt |
5461097 |
T |
|
| Q |
311 |
aatggaaaaactaagattgtgatatttgatataggcagcaggactatgaaagccacatagagttggtgttggaa |
384 |
Q |
| |
|
|||||||||||| |||||| ||||| || || | ||| ||| ||||| ||||| || | ||| |||||||||| |
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|
| T |
5461096 |
aatggaaaaactgagattgggatatatggtacatgcaacagtactataaaagcagcacatagtcggtgttggaa |
5461023 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 485 - 534
Target Start/End: Original strand, 29633943 - 29633992
Alignment:
| Q |
485 |
ttaatcaagaagaaagtgttcaaaatgattttctatttcatactatgatc |
534 |
Q |
| |
|
|||||||||||||||||| |||||| |||||||||||| ||||| |||| |
|
|
| T |
29633943 |
ttaatcaagaagaaagtgctcaaaagcattttctatttcctactacgatc |
29633992 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 485 - 534
Target Start/End: Original strand, 40389878 - 40389927
Alignment:
| Q |
485 |
ttaatcaagaagaaagtgttcaaaatgattttctatttcatactatgatc |
534 |
Q |
| |
|
|||||||||||||||||| |||||| |||||||||||| ||||| |||| |
|
|
| T |
40389878 |
ttaatcaagaagaaagtgctcaaaagcattttctatttcctactacgatc |
40389927 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 52; Significance: 1e-20; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 145 - 276
Target Start/End: Complemental strand, 24866657 - 24866526
Alignment:
| Q |
145 |
aatctgcttattttgttctaaataatatttcagaaacacaataactgagagcaatatatagataccagagggattatagtttcttaaggaatggcctgaa |
244 |
Q |
| |
|
||||| |||||||| |||||| |||||||||| ||||||||||||| | |||||||| |||||| ||||||||||| |||| || ||||||||| | | |
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|
| T |
24866657 |
aatcttcttattttattctaactaatatttcaaaaacacaataacttatagcaatatgtagatatgagagggattatggttttttgaggaatggctggga |
24866558 |
T |
|
| Q |
245 |
acaaagtaataacaaaaatatgaagaaataca |
276 |
Q |
| |
|
||| || |||||||| |||||| |||||||| |
|
|
| T |
24866557 |
acatagagataacaaatatatgatgaaataca |
24866526 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 490 - 533
Target Start/End: Complemental strand, 24864555 - 24864512
Alignment:
| Q |
490 |
caagaagaaagtgttcaaaatgattttctatttcatactatgat |
533 |
Q |
| |
|
||||||||||||| |||||| ||||||||||||| ||||||||| |
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|
| T |
24864555 |
caagaagaaagtgctcaaaaggattttctatttcttactatgat |
24864512 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 441 - 487
Target Start/End: Complemental strand, 24864685 - 24864640
Alignment:
| Q |
441 |
ttggccaccgacgaaaagtatcaatgtgcatcaaggttctaccatta |
487 |
Q |
| |
|
|||||||||||||||| ||| |||| ||||||||||||||||||||| |
|
|
| T |
24864685 |
ttggccaccgacgaaa-gtaacaatttgcatcaaggttctaccatta |
24864640 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 46; Significance: 6e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 145 - 306
Target Start/End: Complemental strand, 50379561 - 50379400
Alignment:
| Q |
145 |
aatctgcttattttgttctaaataatatttcagaaacacaataactgagagcaatatatagataccagagggattatagtttcttaaggaatggcctgaa |
244 |
Q |
| |
|
||||| |||||||| |||||| |||||||||| ||||| | ||| ||||||| |||||| | | ||||| |||| || |||| |||||||| ||||| |
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|
| T |
50379561 |
aatcttcttattttattctaactaatatttcaaaaacaaagtaattgagagcggtatataaacatgagaggtattagggtatcttgaggaatggtctgaa |
50379462 |
T |
|
| Q |
245 |
acaaagtaataacaaaaatatgaagaaatacataatatcaacggagcatcacaacaatgttt |
306 |
Q |
| |
|
||| | |||||||||||| |||||||| ||||||||||||||||| ||||||||||| |
|
|
| T |
50379461 |
acagtgagataacaaaaataggaagaaatcgggaatatcaacggagcatcgcaacaatgttt |
50379400 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0039 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0039
Description:
Target: scaffold0039; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 485 - 529
Target Start/End: Original strand, 83654 - 83698
Alignment:
| Q |
485 |
ttaatcaagaagaaagtgttcaaaatgattttctatttcatacta |
529 |
Q |
| |
|
|||||||||||||||||| |||||| |||||||||||| ||||| |
|
|
| T |
83654 |
ttaatcaagaagaaagtgctcaaaagcattttctatttcctacta |
83698 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 343 - 430
Target Start/End: Complemental strand, 6508122 - 6508037
Alignment:
| Q |
343 |
aggcagcaggactatgaaagccacatagagttggtgttggaacgttggtctttctcctttgaggaagagaaatgagaaaaggggaagg |
430 |
Q |
| |
|
||||||||| ||| ||| |||| |||||||| ||||| | || |||||||||| |||| ||| |||||||||| |||||||||||| |
|
|
| T |
6508122 |
aggcagcagtactgtgacagccgcatagagtcggtgtggaaa--ttggtctttcgccttcgagatagagaaatgaaaaaaggggaagg |
6508037 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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