View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2690_low_4 (Length: 422)
Name: NF2690_low_4
Description: NF2690
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2690_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 305; Significance: 1e-171; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 65 - 414
Target Start/End: Complemental strand, 7005922 - 7005571
Alignment:
| Q |
65 |
gcaacggaccaactgtgcag--ttacattcaacctggttcgattgtgattcaatccaattaaatgggactatgatacaactggaatctagccaactggcg |
162 |
Q |
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||||||||||| |||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
7005922 |
gcaacggaccagctgtgcagagttatattcaacctggttcgattgtgattcaatccaattaaatgggactatgatacaactggaacctagccaactggcg |
7005823 |
T |
|
| Q |
163 |
gattggttggtgttcggttcaaccagttgtactcaccagttcgatccaatatttaaaacattgataagacgttttaatcttaccctcccacttggtcttt |
262 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7005822 |
gattggttggtgttcggttcaaccagttgtactcaccagttcaatccaatttttaaaacattgataagacgttttaatcttaccctcccacttggtcttt |
7005723 |
T |
|
| Q |
263 |
tacaaaccatggcctccaatcatctacaatggagtagtttagatcccttatccatgcttgagtagagatgaaaggaacaactgcatcatgatctccactg |
362 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
7005722 |
tacaaaccatggcctccaatcatctacaatggagtagtttagattccttatccaagcttgagtagagatgaaaggaacaactgcatcttgatctccactg |
7005623 |
T |
|
| Q |
363 |
ccaacaacacatcaaaaagtctcattgcttcaaaactgaaattaagaataat |
414 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
7005622 |
ccaacaacacatcaaaaagtctcattgcttcaaaactgaaattaagagtaat |
7005571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 241 - 414
Target Start/End: Complemental strand, 7015536 - 7015363
Alignment:
| Q |
241 |
cttaccctcccacttggtcttttacaaaccatggcctccaatcatctacaatggagtagtttagatcccttatccatgcttgagtagagatgaaaggaac |
340 |
Q |
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|||||||||| |||||| | |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
7015536 |
cttaccctcctacttggccatttacaaaccatggcctccaatcatctacaatggagtagtttagattccttatccatgcttgagtagagatgaaaggaac |
7015437 |
T |
|
| Q |
341 |
aactgcatcatgatctccactgccaacaacacatcaaaaagtctcattgcttcaaaactgaaattaagaataat |
414 |
Q |
| |
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||||||||| |||||||||||| |||||||||||||||||||||||||||||||||| |||||||||| |||| |
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| T |
7015436 |
aactgcatcgtgatctccactggcaacaacacatcaaaaagtctcattgcttcaaaatggaaattaagagtaat |
7015363 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 96 - 377
Target Start/End: Complemental strand, 7058170 - 7057889
Alignment:
| Q |
96 |
ctggttcgattgtgattcaatccaattaaatgggactatgatacaactggaatctagccaactggcggattggttggtgttcggttcaaccagttgtact |
195 |
Q |
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|||||||||||||| |||| |||| || ||||||||||||||| |||||||||| ||||| |||||| || | || ||||||||||| |||| || |
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| T |
7058170 |
ctggttcgattgtggttcagtccagttcaatgggactatgataaaactggaatcaagccagctggcgaatatgctgactttcggttcaactggttgaacc |
7058071 |
T |
|
| Q |
196 |
caccagttcgatccaatatttaaaacattgataagacgttttaatcttaccctcccacttggtcttttacaaaccatggcctccaatcatctacaatgga |
295 |
Q |
| |
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|| |||| ||| ||| ||||||||||||||| || | || | ||||||||||||||||| | ||||||||||||| ||||||||||||||||||||| |
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| T |
7058070 |
ggcctgttcaatctaatttttaaaacattgatatgaaggttgatgcttaccctcccacttggccatttacaaaccatgacctccaatcatctacaatgga |
7057971 |
T |
|
| Q |
296 |
gtagtttagatcccttatccatgcttgagtagagatgaaaggaacaactgcatcatgatctccactgccaacaacacatcaa |
377 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||| || |||||||||| |
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| T |
7057970 |
gtagtttagatcccttatccatgcttgagtagagatgaaaggaacaactacatcatgatccccactgcaaaaaacacatcaa |
7057889 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 90 - 377
Target Start/End: Complemental strand, 7042163 - 7041872
Alignment:
| Q |
90 |
ttcaacctggttcgattgtgattcaatccaattaaatgggactatgatacaactggaatctagccaactggcggattggttggtgttcggttcaaccagt |
189 |
Q |
| |
|
|||||| ||||||| |||||||||| |||| || || |||||||||| | |||||||| |||||| ||||| ||||| || ||||||||||||||| |
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| T |
7042163 |
ttcaacttggttcggttgtgattcattccagttcaacaggactatgattaatctggaatcaagccaattggcgaattggcaggctttcggttcaaccagt |
7042064 |
T |
|
| Q |
190 |
tgtactcac----cagttcgatccaatatttaaaacattgataagacgttttaatcttaccctcccacttggtcttttacaaaccatggcctccaatcat |
285 |
Q |
| |
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|| || || |||||| || ||| || |||||||||||| || |||| | ||||||||||||||||| | |||||||||||||||||||| |||| |
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| T |
7042063 |
tgaaccgacggaccagttcaatttaattttcaaaacattgatatgaagtttcatacttaccctcccacttggccatttacaaaccatggcctccagtcat |
7041964 |
T |
|
| Q |
286 |
ctacaatggagtagtttagatcccttatccatgcttgagtagagatgaaaggaacaactgcatcatgatctccactgccaacaacacatcaa |
377 |
Q |
| |
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||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| ||||||| || |||||||||| |
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| T |
7041963 |
ctacaatggagtagtttagatcccttatccaagcttgagtagacatgaaaggaacaactgcatcatgatccccactgcaaaaaacacatcaa |
7041872 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 241 - 377
Target Start/End: Complemental strand, 6996622 - 6996486
Alignment:
| Q |
241 |
cttaccctcccacttggtcttttacaaaccatggcctccaatcatctacaatggagtagtttagatcccttatccatgcttgagtagagatgaaaggaac |
340 |
Q |
| |
|
|||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||| ||||||||||| |
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| T |
6996622 |
cttaccctcccacttgaccgtttacaaaccatggcctccaatcatctacaatggagtagtttagattccttatccaagcttgagtagacatgaaaggaac |
6996523 |
T |
|
| Q |
341 |
aactgcatcatgatctccactgccaacaacacatcaa |
377 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| |
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| T |
6996522 |
aactgcatcatgatctccactgccaacaacacatcaa |
6996486 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 90 - 377
Target Start/End: Complemental strand, 7049259 - 7048972
Alignment:
| Q |
90 |
ttcaacctggttcgattgtgattcaatccaattaaatgggactatgatacaactggaatctagccaactggcggattggttggtgttcggttcaaccagt |
189 |
Q |
| |
|
|||||||| ||||||||||| |||| |||| || || |||||||||||| |||||||||| |||||||||||| || | || ||||||||||| || |
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| T |
7049259 |
ttcaacctagttcgattgtggttcagtccagttcaacgggactatgataaaactggaatcaagccaactggcgaatatgctgactttcggttcaactggt |
7049160 |
T |
|
| Q |
190 |
tgtactcaccagttcgatccaatatttaaaacattgataagacgttttaatcttaccctcccacttggtcttttacaaaccatggcctccaatcatctac |
289 |
Q |
| |
|
|| || |||||||| ||| ||| ||||||||||||||| || | || | |||||||| |||||||| | |||||| |||||| ||||||||| |||| |
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|
| T |
7049159 |
tgaaccgaccagttcaatctaatttttaaaacattgatatgaaggttgatgcttaccctgccacttggccatttacataccatgacctccaatcctctat |
7049060 |
T |
|
| Q |
290 |
aatggagtagtttagatcccttatccatgcttgagtagagatgaaaggaacaactgcatcatgatctccactgccaacaacacatcaa |
377 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||| | |||| |||| ||||||| || |||||||||| |
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|
| T |
7049059 |
aatggagtagtttagatcccttatccatgcttgagtagaccggaaaggaacaattaaatcaagatccccactgcaaaaaacacatcaa |
7048972 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 241 - 366
Target Start/End: Complemental strand, 7022282 - 7022157
Alignment:
| Q |
241 |
cttaccctcccacttggtcttttacaaaccatggcctccaatcatctacaatggagtagtttagatcccttatccatgcttgagtagagatgaaaggaac |
340 |
Q |
| |
|
|||||||||||||||| | |||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||| ||||||||||| |
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|
| T |
7022282 |
cttaccctcccacttgaccatttacaaaccatggcctccaatcatctacagtggagtaatttagatcccttatccatgcttgagtagacatgaaaggaac |
7022183 |
T |
|
| Q |
341 |
aactgcatcatgatctccactgccaa |
366 |
Q |
| |
|
|| ||||||| || | |||||||||| |
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|
| T |
7022182 |
aattgcatcaagaaccccactgccaa |
7022157 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 241 - 377
Target Start/End: Complemental strand, 7029016 - 7028880
Alignment:
| Q |
241 |
cttaccctcccacttggtcttttacaaaccatggcctccaatcatctacaatggagtagtttagatcccttatccatgcttgagtagagatgaaaggaac |
340 |
Q |
| |
|
|||||||| ||||||| | ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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|
| T |
7029016 |
cttaccctgccacttgaccatttacaaaccatgacctccaatcatctacaatggagtagtttagatcccttatccatgcttgagtagactggaaaggaac |
7028917 |
T |
|
| Q |
341 |
aactgcatcatgatctccactgccaacaacacatcaa |
377 |
Q |
| |
|
|||| |||| |||| ||||||| || |||||||||| |
|
|
| T |
7028916 |
aactaaatcaagatccccactgcaaaaaacacatcaa |
7028880 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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