View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2691_high_1 (Length: 405)
Name: NF2691_high_1
Description: NF2691
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2691_high_1 |
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| [»] scaffold0062 (3 HSPs) |
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Alignment Details
Target: scaffold0062 (Bit Score: 343; Significance: 0; HSPs: 3)
Name: scaffold0062
Description:
Target: scaffold0062; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 24 - 402
Target Start/End: Original strand, 15627 - 16005
Alignment:
| Q |
24 |
tttgccactgaggagtatgacgctcaaaataaaggcacaggagttttcaaggaaacttggaatactagagcattcggtccagaagcagtgagaaatttga |
123 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15627 |
tttgccactgaggagtatgacgctcaaaataaaggcacaggagttttcaaggaaacttggaatactagagcattcggtccagaagcagtgagaaatttga |
15726 |
T |
|
| Q |
124 |
agggaaataatccaaatgtgaaggtgataataagcattggaggtaatgacactgttaaaactccattcaatcctgttgaggaaaatatctggatttcgca |
223 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||| ||| |
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| T |
15727 |
agggaaataatccaaatgtgaaggtggtaataagcattggaggtaatgacaccgttaaaactccattcaatcctgttgaggaaactatctggattacgcg |
15826 |
T |
|
| Q |
224 |
ggctgtgtcttcactcaaagggatcatccaaaaatacaaggatcaaactggcaacataattgatggcattgacattaattatcttaacgtcttccatact |
323 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15827 |
ggctgtgtcttcactcaaagtgatcatccaaaaatacaaggatcaaaccggcaacataattgatggcattgacattaattatcttaacgtcttccatact |
15926 |
T |
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| Q |
324 |
acaaatgacacaggtaagcttcgttttgccaggtgcataggggaagttataacccaacttaagaatgagaattatctac |
402 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||| |
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| T |
15927 |
acaaatgacacaggtaagcttcgttttgccaggtgcataggggaagttataactcaacttaagaatgataattatctac |
16005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0062; HSP #2
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 24 - 402
Target Start/End: Original strand, 25795 - 26173
Alignment:
| Q |
24 |
tttgccactgaggagtatgacgctcaaaataaaggcacaggagttttcaaggaaacttggaatactagagcattcggtccagaagcagtgagaaatttga |
123 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25795 |
tttgccactgaggagtatgacgctcaaaataaaggcacaggagttttcaaggaaacttggaatactagagcattcggtccagaagcagtgagaaatttga |
25894 |
T |
|
| Q |
124 |
agggaaataatccaaatgtgaaggtgataataagcattggaggtaatgacactgttaaaactccattcaatcctgttgaggaaaatatctggatttcgca |
223 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||| ||| |
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| T |
25895 |
agggaaataatccaaatgtgaaggtggtaataagcattggaggtaatgacaccgttaaaactccattcaatcctgttgaggaaactatctggattacgcg |
25994 |
T |
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| Q |
224 |
ggctgtgtcttcactcaaagggatcatccaaaaatacaaggatcaaactggcaacataattgatggcattgacattaattatcttaacgtcttccatact |
323 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25995 |
ggctgtgtcttcactcaaagtgatcatccaaaaatacaaggatcaaaccggcaacataattgatggcattgacattaattatcttaacgtcttccatact |
26094 |
T |
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| Q |
324 |
acaaatgacacaggtaagcttcgttttgccaggtgcataggggaagttataacccaacttaagaatgagaattatctac |
402 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||| |
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| T |
26095 |
acaaatgacacaggtaagcttcgttttgccaggtgcataggggaagttataactcaacttaagaatgataattatctac |
26173 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0062; HSP #3
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 24 - 402
Target Start/End: Original strand, 35961 - 36339
Alignment:
| Q |
24 |
tttgccactgaggagtatgacgctcaaaataaaggcacaggagttttcaaggaaacttggaatactagagcattcggtccagaagcagtgagaaatttga |
123 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35961 |
tttgccactgaggagtatgacgctcaaaataaaggcacaggagttttcaaggaaacttggaatactagagcattcggtccagaagcagtgagaaatttga |
36060 |
T |
|
| Q |
124 |
agggaaataatccaaatgtgaaggtgataataagcattggaggtaatgacactgttaaaactccattcaatcctgttgaggaaaatatctggatttcgca |
223 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||| ||| |
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| T |
36061 |
agggaaataatccaaatgtgaaggtggtaataagcattggaggtaatgacaccgttaaaactccattcaatcctgttgaggaaactatctggattacgcg |
36160 |
T |
|
| Q |
224 |
ggctgtgtcttcactcaaagggatcatccaaaaatacaaggatcaaactggcaacataattgatggcattgacattaattatcttaacgtcttccatact |
323 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36161 |
ggctgtgtcttcactcaaagtgatcatccaaaaatacaaggatcaaaccggcaacataattgatggcattgacattaattatcttaacgtcttccatact |
36260 |
T |
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| Q |
324 |
acaaatgacacaggtaagcttcgttttgccaggtgcataggggaagttataacccaacttaagaatgagaattatctac |
402 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||| |
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| T |
36261 |
acaaatgacacaggtaagcttcgttttgccaggtgcataggggaagttataactcaacttaagaatgataattatctac |
36339 |
T |
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