View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2691_low_1 (Length: 745)
Name: NF2691_low_1
Description: NF2691
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2691_low_1 |
 | |
|
| [»] scaffold0019 (1 HSPs) |
| | |
|
| [»] scaffold0196 (2 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 645; Significance: 0; HSPs: 17)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 645; E-Value: 0
Query Start/End: Original strand, 7 - 727
Target Start/End: Original strand, 11621469 - 11622187
Alignment:
| Q |
7 |
ctgagatgaattatacaatttgtttgttcataccataccagatacgatatagacatggcggaccacttgtacttcatggcatcacatgtacatttaaagc |
106 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11621469 |
ctgatatgaattatacaatttgtttgttcataccataccagatacgatatagacatggcggaccacttgtacttcatggcatcacatgtacatttaaagc |
11621568 |
T |
|
| Q |
107 |
aggtcacaagattggtatttttggcagaacaggcagtgggtagtccactcttatcggtgctttatttcgccttgtggaaccagcaggcggaaaaattgta |
206 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
11621569 |
aggtcacaagattggtattgttggcagaacaggcagtgggaagtccactcttatcggtgctttatttcgccttgtggaaccagcaggtggaaaaattgta |
11621668 |
T |
|
| Q |
207 |
gttgacggcatagatatctcatctattggcctacatgatttgaggtcacgttttggtattatacctcaagatcctacactttttaacgggacagtaagat |
306 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11621669 |
gttgatggcatagatatctcatctattggcctacatgatttgaggtcacgttttggtattatacctcaagatcctacactttttaacgggacagtaagat |
11621768 |
T |
|
| Q |
307 |
ttaacttggaccctttatctcaacacaccgatcaagagatatgggaggtaaaacaagcttacnnnnnnnnnnnnnccttttgctttgcataaaaaatgcg |
406 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
11621769 |
ttaacttggaccctttatctcaacacaccgatcaagagatatgggaggtaaaacaagcttac--tttttttttttccttttgctttgcataaaaaatgcg |
11621866 |
T |
|
| Q |
407 |
gactaattctttattaatatgaaggttcttgggaagtgtcaattacgagaagtcgtccaagagaaagaagagggtttagattcatcaggtacattttcaa |
506 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11621867 |
gactaattctttattaatatgaaggttcttgggaagtgtcaattgcgagaagtcgtccaagagaaagaagagggtttagattcatcaggtacattttcaa |
11621966 |
T |
|
| Q |
507 |
gtctcattgtcatagctatgttagaagttcattgtgtttccaagttagtattaactagtgaagattgttacgcagttgttgaggatggatcaaactggag |
606 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11621967 |
gtctcattgtcatagctacgttagaagttcattgtgtttccaagttagtattaactagtgaagattgttacgcagttgttgaggatggatcaaactggag |
11622066 |
T |
|
| Q |
607 |
catgggacaacgacagttattctgtttgggacgtgctcttttgagaagaagtaagattttggtattggacgaagcaactgcgtcaattgataattctact |
706 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11622067 |
catgggacaacgacagttattctgtttgggacgtgctcttttgagaagaagtaagattttggtattggacgaagcaactgcgtcaattgataattctact |
11622166 |
T |
|
| Q |
707 |
gatctgattgtgcaaaaaacc |
727 |
Q |
| |
|
|||||||||||||| |||||| |
|
|
| T |
11622167 |
gatctgattgtgcagaaaacc |
11622187 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 23 - 357
Target Start/End: Original strand, 11666226 - 11666560
Alignment:
| Q |
23 |
aatttgtttgttcataccataccagatacgatatagacatggcggaccacttgtacttcatggcatcacatgtacatttaaagcaggtcacaagattggt |
122 |
Q |
| |
|
|||||||||| || |||||| | |||||||||| || | || ||||||||||||||||| || |||||||| |||||| |||||||||||||||||||| |
|
|
| T |
11666226 |
aatttgtttgatcgtaccatgctagatacgatacaggcctgatggaccacttgtacttcacgggatcacatgcacatttgaagcaggtcacaagattggt |
11666325 |
T |
|
| Q |
123 |
atttttggcagaacaggcagtgggtagtccactcttatcggtgctttatttcgccttgtggaaccagcaggcggaaaaattgtagttgacggcatagata |
222 |
Q |
| |
|
||| |||| ||||||||||||||| | |||||||||||| ||||||||||||| |||||||||||| | | |||||| | |||||||| |||||||| | |
|
|
| T |
11666326 |
attgttggaagaacaggcagtgggaaatccactcttatcagtgctttatttcgtcttgtggaaccaaccgaaggaaaagtcgtagttgatggcatagaca |
11666425 |
T |
|
| Q |
223 |
tctcatctattggcctacatgatttgaggtcacgttttggtattatacctcaagatcctacactttttaacgggacagtaagatttaacttggacccttt |
322 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11666426 |
tctcatctattggccttcatgatttgaggtcacgttttggaattatacctcaagatcctacactttttaacgggacagtaagatttaacttggacccttt |
11666525 |
T |
|
| Q |
323 |
atctcaacacaccgatcaagagatatgggaggtaa |
357 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
11666526 |
atctcaacacaccgatcaagagatatgggaggtaa |
11666560 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 183; E-Value: 1e-98
Query Start/End: Original strand, 46 - 356
Target Start/End: Complemental strand, 11707287 - 11706977
Alignment:
| Q |
46 |
agatacgatatagacatggcggaccacttgtacttcatggcatcacatgtacatttaaagcaggtcacaagattggtatttttggcagaacaggcagtgg |
145 |
Q |
| |
|
|||||||||| || | || ||||||||||||||||||||| |||||||| |||||| ||||||||||||||||||||||| | || ||||||||||| || |
|
|
| T |
11707287 |
agatacgatacaggcctgacggaccacttgtacttcatggtatcacatgcacatttgaagcaggtcacaagattggtattgtcggaagaacaggcagcgg |
11707188 |
T |
|
| Q |
146 |
gtagtccactcttatcggtgctttatttcgccttgtggaaccagcaggcggaaaaattgtagttgacggcatagatatctcatctattggcctacatgat |
245 |
Q |
| |
|
| | ||||||||||| ||||||||||||| |||||||||||| |||| ||||| ||| | ||||| |||||||| ||||||||||||||||| |||||| |
|
|
| T |
11707187 |
gaaatccactcttattagtgctttatttcgtcttgtggaaccaacaggaggaaacattatggttgatggcatagacatctcatctattggccttcatgat |
11707088 |
T |
|
| Q |
246 |
ttgaggtcacgttttggtattatacctcaagatcctacactttttaacgggacagtaagatttaacttggaccctttatctcaacacaccgatcaagaga |
345 |
Q |
| |
|
|||||||| | |||||| |||||||||||||||||||| ||||||||||||||||| |||| |||||||||||||||||||||||||| |||||||||| |
|
|
| T |
11707087 |
ttgaggtcgcattttgggattatacctcaagatcctacgctttttaacgggacagtcagatataacttggaccctttatctcaacacagtgatcaagaga |
11706988 |
T |
|
| Q |
346 |
tatgggaggta |
356 |
Q |
| |
|
||||||||||| |
|
|
| T |
11706987 |
tatgggaggta |
11706977 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 180; E-Value: 8e-97
Query Start/End: Original strand, 28 - 359
Target Start/End: Complemental strand, 11670934 - 11670603
Alignment:
| Q |
28 |
gtttgttcataccataccagatacgatatagacatggcggaccacttgtacttcatggcatcacatgtacatttaaagcaggtcacaagattggtatttt |
127 |
Q |
| |
|
||||||||||||||| ||||| || || |||| || ||||||||| |||||||| || |||||||| ||||| |||||||| |||||||||||||| | |
|
|
| T |
11670934 |
gtttgttcataccatgtcagattcgttacagacctgacggaccactagtacttcacgggatcacatgcacattcaaagcagggcacaagattggtatcgt |
11670835 |
T |
|
| Q |
128 |
tggcagaacaggcagtgggtagtccactcttatcggtgctttatttcgccttgtggaaccagcaggcggaaaaattgtagttgacggcatagatatctca |
227 |
Q |
| |
|
|| ||||||||||| ||| | |||||||||||| ||||||||||||| ||||||||||||||||| ||||||||| |||| || || ||||| || ||| |
|
|
| T |
11670834 |
cggaagaacaggcagcgggaaatccactcttatcagtgctttatttcgtcttgtggaaccagcaggaggaaaaattatagtcgatggaatagacatatca |
11670735 |
T |
|
| Q |
228 |
tctattggcctacatgatttgaggtcacgttttggtattatacctcaagatcctacactttttaacgggacagtaagatttaacttggaccctttatctc |
327 |
Q |
| |
|
|||||||| || ||||||||||||||||||||||||||||||||||| || ||||| |||||||| ||||||||||||| ||| |||||||||||||||| |
|
|
| T |
11670734 |
tctattggtcttcatgatttgaggtcacgttttggtattatacctcaggagcctaccctttttaatgggacagtaagatataatttggaccctttatctc |
11670635 |
T |
|
| Q |
328 |
aacacaccgatcaagagatatgggaggtaaaa |
359 |
Q |
| |
|
||||||| |||||||||||||||||||||||| |
|
|
| T |
11670634 |
aacacactgatcaagagatatgggaggtaaaa |
11670603 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 178; E-Value: 1e-95
Query Start/End: Original strand, 66 - 359
Target Start/End: Complemental strand, 11628990 - 11628697
Alignment:
| Q |
66 |
ggaccacttgtacttcatggcatcacatgtacatttaaagcaggtcacaagattggtatttttggcagaacaggcagtgggtagtccactcttatcggtg |
165 |
Q |
| |
|
|||||||||||||||||||| |||||||| |||||| ||||||| || ||||||||||| | || ||||||||||||||| | |||||||||||| ||| |
|
|
| T |
11628990 |
ggaccacttgtacttcatgggatcacatgcacatttgaagcagggcataagattggtatcgtcggaagaacaggcagtgggaaatccactcttatcagtg |
11628891 |
T |
|
| Q |
166 |
ctttatttcgccttgtggaaccagcaggcggaaaaattgtagttgacggcatagatatctcatctattggcctacatgatttgaggtcacgttttggtat |
265 |
Q |
| |
|
|||||||||| ||||||||||||||||| || |||||| ||||||| || ||||| || ||||||||||| || |||||||||||||||||||||||||| |
|
|
| T |
11628890 |
ctttatttcgtcttgtggaaccagcaggaggcaaaattatagttgatggaatagacatatcatctattggtcttcatgatttgaggtcacgttttggtat |
11628791 |
T |
|
| Q |
266 |
tatacctcaagatcctacactttttaacgggacagtaagatttaacttggaccctttatctcaacacaccgatcaagagatatgggaggtaaaa |
359 |
Q |
| |
|
||||||||| |||||||| |||||||| ||||||||||||| ||| ||||||||||||||||||||||| |||||||| ||||||||||||||| |
|
|
| T |
11628790 |
tatacctcaggatcctaccctttttaatgggacagtaagatataatttggaccctttatctcaacacactgatcaagaaatatgggaggtaaaa |
11628697 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 115; E-Value: 5e-58
Query Start/End: Original strand, 422 - 727
Target Start/End: Complemental strand, 11670545 - 11670242
Alignment:
| Q |
422 |
aatatgaaggttcttgggaagtgtcaattacgagaagtcgtccaagagaaagaagagggtttagattcatcaggtacattttcaagtctcattgtcatag |
521 |
Q |
| |
|
|||| ||||||||||||||||||||| || |||||||| ||||||| ||||||||||||||| | |||||||||||| |||||||| ||| ||| |||| |
|
|
| T |
11670545 |
aatacgaaggttcttgggaagtgtcagttgcgagaagttgtccaaggaaaagaagagggtttaaactcatcaggtacactttcaagtttcaatgttatag |
11670446 |
T |
|
| Q |
522 |
ctatgttagaagttcattgtgtttccaagttagtattaactagtgaagattgttacgcagttgttgaggatggatcaaactggagcatgggacaacgaca |
621 |
Q |
| |
|
||||| | ||| ||||| | | || |||||||| | | ||||| ||||| | |||||||||| ||||||||||| ||||||||||||||| | || |
|
|
| T |
11670445 |
ctatgatggaaaatcattttct--ccgagttagtaatgagccgtgaaatttgtttcccagttgttgaagatggatcaaattggagcatgggacaaaggca |
11670348 |
T |
|
| Q |
622 |
gttattctgtttgggacgtgctcttttgagaagaagtaagattttggtattggacgaagcaactgcgtcaattgataattctactgatctgattgtgcaa |
721 |
Q |
| |
|
|||||| |||||||| |||| |||||||| |||||| ||| ||||| ||||||||||||||||| ||||||||||||||||||||||| ||| |||| |
|
|
| T |
11670347 |
gttattttgtttggggcgtgtacttttgaggcgaagtaggatattggtgttggacgaagcaactgcttcaattgataattctactgatcttattctgcag |
11670248 |
T |
|
| Q |
722 |
aaaacc |
727 |
Q |
| |
|
|||||| |
|
|
| T |
11670247 |
aaaacc |
11670242 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 98; E-Value: 7e-48
Query Start/End: Original strand, 68 - 357
Target Start/End: Complemental strand, 12090202 - 12089913
Alignment:
| Q |
68 |
accacttgtacttcatggcatcacatgtacatttaaagcaggtcacaagattggtatttttggcagaacaggcagtgggtagtccactcttatcggtgct |
167 |
Q |
| |
|
|||||||||||| ||||| |||| || || ||| ||| ||| ||||||||||||||| | || ||||| ||||| || | || ||||| || |||||| |
|
|
| T |
12090202 |
accacttgtactacatggtatcaattgcacctttgaaggagggcacaagattggtattgtcggtagaactggcagcggaaaatcaactctgattggtgct |
12090103 |
T |
|
| Q |
168 |
ttatttcgccttgtggaaccagcaggcggaaaaattgtagttgacggcatagatatctcatctattggcctacatgatttgaggtcacgttttggtatta |
267 |
Q |
| |
|
|| ||||| |||||||| || | || || |||||| |||| || || ||||| || |||||||||||||| ||||| ||||||||| |||||||||||| |
|
|
| T |
12090102 |
ttgtttcgtcttgtggagccgacgggaggcaaaattatagtcgatggaatagacatatcatctattggccttcatgacttgaggtcaagttttggtatta |
12090003 |
T |
|
| Q |
268 |
tacctcaagatcctacactttttaacgggacagtaagatttaacttggaccctttatctcaacacaccgatcaagagatatgggaggtaa |
357 |
Q |
| |
|
||||||| |||||||| ||||| | ||||||||| |||| ||||||||| |||||||||||||| | |||||||| ||||||||||||| |
|
|
| T |
12090002 |
tacctcaggatcctacccttttcatcgggacagttagatataacttggatcctttatctcaacattctgatcaagaaatatgggaggtaa |
12089913 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 66 - 357
Target Start/End: Complemental strand, 11736559 - 11736268
Alignment:
| Q |
66 |
ggaccacttgtacttcatggcatcacatgtacatttaaagcaggtcacaagattggtatttttggcagaacaggcagtgggtagtccactcttatcggtg |
165 |
Q |
| |
|
|||||||||||||||||||| || | || ||||| ||| ||| ||||||||||||||| |||| ||||| ||||| ||| | || ||||| || |||| |
|
|
| T |
11736559 |
ggaccacttgtacttcatggtataaattgcacattcgaaggaggacacaagattggtattgttggaagaacgggcagcgggaaatcaactctgataggtg |
11736460 |
T |
|
| Q |
166 |
ctttatttcgccttgtggaaccagcaggcggaaaaattgtagttgacggcatagatatctcatctattggcctacatgatttgaggtcacgttttggtat |
265 |
Q |
| |
|
|||| ||||| |||||||| |||| || || | |||| || |||| || ||| | || || ||||||||||| ||||| ||||||||| |||| |||| |
|
|
| T |
11736459 |
ctttgtttcgacttgtggagccagagggaggcagaattataattgatggaataaacatatcgtctattggccttcatgacttgaggtcaagtttaagtat |
11736360 |
T |
|
| Q |
266 |
tatacctcaagatcctacactttttaacgggacagtaagatttaacttggaccctttatctcaacacaccgatcaagagatatgggaggtaa |
357 |
Q |
| |
|
||||||||| |||||||| ||||||| |||||||| |||| ||||||||| |||||||||||||| |||||||||| ||||||||||||| |
|
|
| T |
11736359 |
tatacctcaggatcctaccctttttattgggacagttagatataacttggatcctttatctcaacattccgatcaagaaatatgggaggtaa |
11736268 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 423 - 711
Target Start/End: Complemental strand, 11628631 - 11628344
Alignment:
| Q |
423 |
atatgaaggttcttgggaagtgtcaattacgagaagtcgtccaagagaaagaagagggtttagattcatcaggtacattttcaagtctcattgtcatagc |
522 |
Q |
| |
|
|||| |||||||| ||||||||||| || |||||||| ||||||| |||||||||||||||| | || ||||||| ||| |||| ||| | | ||||| |
|
|
| T |
11628631 |
atattaaggttctcgggaagtgtcagttgcgagaagttgtccaagggaaagaagagggtttaaactcgtcaggtatgcttt-aagtttcacttttatagc |
11628533 |
T |
|
| Q |
523 |
tatgttagaagttcattgtgtttccaagttagtattaactagtgaaga-ttgttacgcagttgttgaggatggatcaaactggagcatgggacaacgaca |
621 |
Q |
| |
|
|| | | ||||| |||| | ||| ||| || | || ||| |||| | |||||||||||||||||| ||||||||||||||||||||||||||| | || |
|
|
| T |
11628532 |
tacgctggaagtacatt-tatttgcaaagtacaaatagctaatgaaaaattgttacgcagttgttgaagatggatcaaactggagcatgggacaaaggca |
11628434 |
T |
|
| Q |
622 |
gttattctgtttgggacgtgctcttttgagaagaagtaagattttggtattggacgaagcaactgcgtcaattgataattctactgatct |
711 |
Q |
| |
|
||||||||||||||| ||||| |||||||| |||||| || ||||| ||||| ||||||||||| || |||||||||||||||||||| |
|
|
| T |
11628433 |
gttattctgtttggggcgtgcgcttttgaggagaagtcgaatattggtgttggatgaagcaactgcttcgattgataattctactgatct |
11628344 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 578 - 727
Target Start/End: Complemental strand, 11706590 - 11706441
Alignment:
| Q |
578 |
gcagttgttgaggatggatcaaactggagcatgggacaacgacagttattctgtttgggacgtgctcttttgagaagaagtaagattttggtattggacg |
677 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||| | ||||||||||||||||| ||||| ||||| || |||||| || |||||| | || | |
|
|
| T |
11706590 |
gcagttgttgaagatggatcaaactggagcatgggacaaaggcagttattctgtttggggcgtgcgcttttaaggagaagtcgaatattggtactcgatg |
11706491 |
T |
|
| Q |
678 |
aagcaactgcgtcaattgataattctactgatctgattgtgcaaaaaacc |
727 |
Q |
| |
|
|||||||||| || |||||||| || |||||||||||| |||| |||||| |
|
|
| T |
11706490 |
aagcaactgcatcgattgataactcaactgatctgattctgcagaaaacc |
11706441 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 578 - 726
Target Start/End: Original strand, 11666937 - 11667085
Alignment:
| Q |
578 |
gcagttgttgaggatggatcaaactggagcatgggacaacgacagttattctgtttgggacgtgctcttttgagaagaagtaagattttggtattggacg |
677 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||| | ||||||||||||||||| ||||| ||||| || |||||| || ||| || | || | |
|
|
| T |
11666937 |
gcagttgttgatgatggatcaaactggagcatgggacaaaggcagttattctgtttggggcgtgcacttttaaggagaagtcgaatattgatacttgatg |
11667036 |
T |
|
| Q |
678 |
aagcaactgcgtcaattgataattctactgatctgattgtgcaaaaaac |
726 |
Q |
| |
|
|||||||||| || |||||||| || |||||||||||| |||| ||||| |
|
|
| T |
11667037 |
aagcaactgcatcgattgataactcaactgatctgattctgcagaaaac |
11667085 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 111 - 356
Target Start/End: Original strand, 11759264 - 11759509
Alignment:
| Q |
111 |
cacaagattggtatttttggcagaacaggcagtgggtagtccactcttatcggtgctttatttcgccttgtggaaccagcaggcggaaaaattgtagttg |
210 |
Q |
| |
|
||||||||||||||| | || ||||| ||||| || | || || || || |||||||| ||||| |||||||| || | || || |||||| |||| | |
|
|
| T |
11759264 |
cacaagattggtattgtcggtagaactggcagcggaaaatctacactgataggtgctttgtttcgtcttgtggagcccgtgggaggcaaaattatagtcg |
11759363 |
T |
|
| Q |
211 |
acggcatagatatctcatctattggcctacatgatttgaggtcacgttttggtattatacctcaagatcctacactttttaacgggacagtaagatttaa |
310 |
Q |
| |
|
| || ||||| || |||||||||||||| ||||| |||||| || ||||||| || |||||||| |||||||| ||||| |||||||| |||| ||| |
|
|
| T |
11759364 |
atggaatagacatatcatctattggccttcatgacttgaggacaagttttggcataatacctcaggatcctacgcttttctttgggacagttagatataa |
11759463 |
T |
|
| Q |
311 |
cttggaccctttatctcaacacaccgatcaagagatatgggaggta |
356 |
Q |
| |
|
| |||| |||||||||||||| | |||||||| |||||||||||| |
|
|
| T |
11759464 |
catggatcctttatctcaacattctgatcaagaaatatgggaggta |
11759509 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 579 - 727
Target Start/End: Complemental strand, 11735774 - 11735626
Alignment:
| Q |
579 |
cagttgttgaggatggatcaaactggagcatgggacaacgacagttattctgtttgggacgtgctcttttgagaagaagtaagattttggtattggacga |
678 |
Q |
| |
|
|||||||||| ||||||||||| |||||||| |||||| || |||||||||||||| |||||| ||||||| |||||| ||| || || ||||| || |
|
|
| T |
11735774 |
cagttgttgaagatggatcaaattggagcattggacaaaagcaattattctgtttggggcgtgctattttgaggcgaagtaggatattagtgttggatga |
11735675 |
T |
|
| Q |
679 |
agcaactgcgtcaattgataattctactgatctgattgtgcaaaaaacc |
727 |
Q |
| |
|
||||||||| |||||||||||||| || ||| ||||| | ||||||||| |
|
|
| T |
11735674 |
agcaactgcatcaattgataattcaacggatatgattctacaaaaaacc |
11735626 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #14
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 572 - 709
Target Start/End: Original strand, 11759722 - 11759859
Alignment:
| Q |
572 |
tgttacgcagttgttgaggatggatcaaactggagcatgggacaacgacagttattctgtttgggacgtgctcttttgagaagaagtaagattttggtat |
671 |
Q |
| |
|
||||| |||||||| || |||||||||||||||||||| |||||| | || |||||||||| || || ||||||||||| |||| || ||| ||||| | |
|
|
| T |
11759722 |
tgttatgcagttgtcgaagatggatcaaactggagcattggacaaaggcaactattctgtttagggcgcgctcttttgaggagaaataggatattggtgt |
11759821 |
T |
|
| Q |
672 |
tggacgaagcaactgcgtcaattgataattctactgat |
709 |
Q |
| |
|
|||| ||||||||||| ||||| |||||| | |||||| |
|
|
| T |
11759822 |
tggatgaagcaactgcatcaatcgataatgcgactgat |
11759859 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #15
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 422 - 526
Target Start/End: Complemental strand, 11706912 - 11706808
Alignment:
| Q |
422 |
aatatgaaggttcttgggaagtgtcaattacgagaagtcgtccaagagaaagaagagggtttagattcatcaggtacattttcaagtctcattgtcatag |
521 |
Q |
| |
|
||||||||||||||||| ||||||||||| |||||||| |||||||||| ||| ||||| ||| | || ||||||||| ||||| || | ||||| ||| |
|
|
| T |
11706912 |
aatatgaaggttcttggaaagtgtcaattgcgagaagttgtccaagagagagacgagggcttaaactcctcaggtacactttcatgtttaattgttatac |
11706813 |
T |
|
| Q |
522 |
ctatg |
526 |
Q |
| |
|
||||| |
|
|
| T |
11706812 |
ctatg |
11706808 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #16
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 590 - 700
Target Start/End: Complemental strand, 12089683 - 12089573
Alignment:
| Q |
590 |
gatggatcaaactggagcatgggacaacgacagttattctgtttgggacgtgctcttttgagaagaagtaagattttggtattggacgaagcaactgcgt |
689 |
Q |
| |
|
|||||||| ||||||||||| |||||| | || |||||||||| || || ||||||||||| ||||||| ||| ||||| | || ||||||||||| | |
|
|
| T |
12089683 |
gatggatcgaactggagcattggacaaaggcaactattctgtttagggcgcgctcttttgaggagaagtaggatattggtgctagatgaagcaactgcat |
12089584 |
T |
|
| Q |
690 |
caattgataat |
700 |
Q |
| |
|
||||||||||| |
|
|
| T |
12089583 |
caattgataat |
12089573 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #17
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 410 - 473
Target Start/End: Original strand, 11666608 - 11666671
Alignment:
| Q |
410 |
taattctttattaatatgaaggttcttgggaagtgtcaattacgagaagtcgtccaagagaaag |
473 |
Q |
| |
|
||||||||| ||||| ||||||||||| ||||||||||| |||||||| ||||||||||||| |
|
|
| T |
11666608 |
taattctttcacaatattaaggttcttggaaagtgtcaattgcgagaagttgtccaagagaaag |
11666671 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0019 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: scaffold0019
Description:
Target: scaffold0019; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 24 - 725
Target Start/End: Complemental strand, 5601 - 4906
Alignment:
| Q |
24 |
atttgtttgttcataccataccagatacgatatagacatggcggaccacttgtacttcatggcatcacatgtacatttaaagcaggtcacaagattggta |
123 |
Q |
| |
|
||||||||||| ||||||| |||||||||||| || | || |||||||||||||||| | || |||||||| || |||| |||||| ||||||||||||| |
|
|
| T |
5601 |
atttgtttgtttataccatgccagatacgatacaggcctgacggaccacttgtacttgacgggatcacatgcacgtttacagcagggcacaagattggta |
5502 |
T |
|
| Q |
124 |
tttttggcagaacaggcagtgggtagtccactcttatcggtgctttatttcgccttgtggaaccagcaggcggaaaaattgtagttgacggcatagatat |
223 |
Q |
| |
|
|| |||| |||||||| |||||| | ||||||||||| ||||||||||||| || |||||||||||||| || |||||| ||||||| || |||| || |
|
|
| T |
5501 |
ttgttggaagaacaggaagtgggaaatccactcttattagtgctttatttcgtctagtggaaccagcaggagggaaaattatagttgatggactagacat |
5402 |
T |
|
| Q |
224 |
ctcatctattggcctacatgatttgaggtcacgttttggtattatacctcaagatcctacactttttaacgggacagtaagatttaacttggacccttta |
323 |
Q |
| |
|
|||||||||||||| || ||||||||||| ||||||| ||||||||||| |||||||| || || || ||||| |||| || ||||||||| |||||| |
|
|
| T |
5401 |
atcatctattggccttcaagatttgaggtcgcgttttgcgattatacctcaggatcctaccctattcaatgggactgtaaaatataacttggatccttta |
5302 |
T |
|
| Q |
324 |
tctcaacacaccgatcaagagatatgggaggtaaaacaagcttacnnnnnnnnnnnnnccttttgctttgcataaaaaatgcggactaattctttattaa |
423 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||| ||||| |||| ||||||| ||||| ||||||| ||| || | |
|
|
| T |
5301 |
tctcaacacactgatcaagagatatgggaggtaaaacatgcttaattttacttatc-----tttgttttgcattgcaaatgtagactaatccttgatcga |
5207 |
T |
|
| Q |
424 |
tatgaaggttcttgggaagtgtcaattacgagaagtcgtccaagagaaagaagagggtttagattcatcaggtacattttcaagtctcattgtcatagct |
523 |
Q |
| |
|
||| |||||||||||||||||||| || |||||||| ||||||| |||||||||||||||| | || ||||||||| ||||| | ||||||| |||| | |
|
|
| T |
5206 |
tataaaggttcttgggaagtgtcagttgcgagaagttgtccaagggaaagaagagggtttaaactcctcaggtacactttcatgcttcattgttatagtt |
5107 |
T |
|
| Q |
524 |
atgttagaagttcattgtgtttccaagttagtattaactagtg-aagattgttacgcagttgttgaggatggatcaaactggagcatgggacaacgacag |
622 |
Q |
| |
|
| | ||||| |||| | || ||| ||||||| ||| ||||| || ||||||| |||||||||| | ||||||||| ||||||||||||||| ||||| |
|
|
| T |
5106 |
cttctggaagtacatt-ttttcccatgttagtaataaatagtgaaaaattgtta-acagttgttgaaggtggatcaaattggagcatgggacaaagacag |
5009 |
T |
|
| Q |
623 |
ttattctgtttgggacgtgctcttttgagaagaagtaagattttggtattggacgaagcaactgcgtcaattgataattctactgatctgattgtgcaaa |
722 |
Q |
| |
|
||||| ||||| | || ||||||||||| ||||||| ||| ||||| ||||| ||||||||||| ||| ||||||||||||| ||||||||| |||||| |
|
|
| T |
5008 |
ttattttgtttagcgcgcgctcttttgaggagaagtaggatattggtgttggatgaagcaactgcatcagttgataattctacagatctgattctgcaaa |
4909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 152; Significance: 4e-80; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 152; E-Value: 4e-80
Query Start/End: Original strand, 46 - 357
Target Start/End: Complemental strand, 16390524 - 16390213
Alignment:
| Q |
46 |
agatacgatatagacatggcggaccacttgtacttcatggcatcacatgtacatttaaagcaggtcacaagattggtatttttggcagaacaggcagtgg |
145 |
Q |
| |
|
|||||||||| || | || ||||||||||||||||||||| |||||||| ||||| ||| ||||||||||||||||||| | || ||||||||||| || |
|
|
| T |
16390524 |
agatacgatacaggcctgacggaccacttgtacttcatgggatcacatgcacattcgaagtaggtcacaagattggtattgtcggaagaacaggcagcgg |
16390425 |
T |
|
| Q |
146 |
gtagtccactcttatcggtgctttatttcgccttgtggaaccagcaggcggaaaaattgtagttgacggcatagatatctcatctattggcctacatgat |
245 |
Q |
| |
|
| ||||||||||| ||||||||||||| |||||||||||| |||| ||||| ||| || |||| ||| | || ||||||||||||||||| |||||| |
|
|
| T |
16390424 |
aaaatccactcttattagtgctttatttcgtcttgtggaaccatcaggaggaaacattataattgatggcgttgacatctcatctattggccttcatgat |
16390325 |
T |
|
| Q |
246 |
ttgaggtcacgttttggtattatacctcaagatcctacactttttaacgggacagtaagatttaacttggaccctttatctcaacacaccgatcaagaga |
345 |
Q |
| |
|
|||||||| |||||||| |||||||||||||||||||| ||||||| ||||||||| |||| ||||||||| |||||||||||| ||| || ||||||| |
|
|
| T |
16390324 |
ttgaggtcgcgttttggcattatacctcaagatcctacgctttttaccgggacagtcagatataacttggatcctttatctcaatacagtgaccaagaga |
16390225 |
T |
|
| Q |
346 |
tatgggaggtaa |
357 |
Q |
| |
|
|||||||||||| |
|
|
| T |
16390224 |
tatgggaggtaa |
16390213 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 577 - 709
Target Start/End: Complemental strand, 16389855 - 16389723
Alignment:
| Q |
577 |
cgcagttgttgaggatggatcaaactggagcatgggacaacgacagttattctgtttgggacgtgctcttttgagaagaagtaagattttggtattggac |
676 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||| | || |||||||||||||| ||||| ||||| || ||||||| || |||||| | || |
|
|
| T |
16389855 |
cgcagttgttgaggatggatcaaattggagcatgggacaaaggcaattattctgtttggggcgtgcgcttttaaggagaagtagaatattggtacttgat |
16389756 |
T |
|
| Q |
677 |
gaagcaactgcgtcaattgataattctactgat |
709 |
Q |
| |
|
||||||||||| ||| | |||||||| |||||| |
|
|
| T |
16389755 |
gaagcaactgcatcagtcgataattcaactgat |
16389723 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 422 - 520
Target Start/End: Complemental strand, 16390154 - 16390056
Alignment:
| Q |
422 |
aatatgaaggttcttgggaagtgtcaattacgagaagtcgtccaagagaaagaagagggtttagattcatcaggtacattttcaagtctcattgtcata |
520 |
Q |
| |
|
||||||||||||||||| ||||||||||| |||||||| |||||||||||||| ||||| ||| | || |||||||| ||||| || | ||||||||| |
|
|
| T |
16390154 |
aatatgaaggttcttggaaagtgtcaattgcgagaagttgtccaagagaaagacgagggcttaaactcctcaggtacgctttcatgtttaattgtcata |
16390056 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0196 (Bit Score: 131; Significance: 1e-67; HSPs: 2)
Name: scaffold0196
Description:
Target: scaffold0196; HSP #1
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 45 - 359
Target Start/End: Original strand, 15915 - 16229
Alignment:
| Q |
45 |
cagatacgatatagacatggcggaccacttgtacttcatggcatcacatgtacatttaaagcaggtcacaagattggtatttttggcagaacaggcagtg |
144 |
Q |
| |
|
||||||||||| || | || |||||||||||||||||||| |||||||| |||||| || |||| | ||||||||||||| |||| ||||||||| ||| |
|
|
| T |
15915 |
cagatacgatacaggcctgaaggaccacttgtacttcatgggatcacatgcacatttgaaccaggccgcaagattggtattgttggaagaacaggctgtg |
16014 |
T |
|
| Q |
145 |
ggtagtccactcttatcggtgctttatttcgccttgtggaaccagcaggcggaaaaattgtagttgacggcatagatatctcatctattggcctacatga |
244 |
Q |
| |
|
|| | ||||| ||||| ||||| ||||||| ||||||||||||||||| || |||||| || | || || ||||| || ||||||| || || ||||| |
|
|
| T |
16015 |
ggaaatccacacttattagtgctctatttcgtcttgtggaaccagcaggagggaaaattataatcgatggaatagacataacatctatcggtcttcatga |
16114 |
T |
|
| Q |
245 |
tttgaggtcacgttttggtattatacctcaagatcctacactttttaacgggacagtaagatttaacttggaccctttatctcaacacaccgatcaagag |
344 |
Q |
| |
|
||||||||||||||| |||||||||||||| ||||||| ||||||| ||||||||| ||| ||| ||||||||||||||| |||| || ||||||||| |
|
|
| T |
16115 |
tttgaggtcacgtttgggtattatacctcaggatcctatcctttttactgggacagtacgatataatttggaccctttatctgaacatactgatcaagag |
16214 |
T |
|
| Q |
345 |
atatgggaggtaaaa |
359 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
16215 |
atatgggaggtaaaa |
16229 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0196; HSP #2
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 389 - 725
Target Start/End: Original strand, 16254 - 16586
Alignment:
| Q |
389 |
ctttgcataaaaaatgcggactaattctttattaatatgaaggttcttgggaagtgtcaattacgagaagtcgtccaagagaaagaagagggtttagatt |
488 |
Q |
| |
|
||||||||| | || | ||||||||||| | |||||||||||||| ||||||||||| || |||||||| ||||||| |||||||||||||||| | | |
|
|
| T |
16254 |
ctttgcatagataacgtggactaattctcagtaaatatgaaggttctcgggaagtgtcagttgcgagaagttgtccaagggaaagaagagggtttaaact |
16353 |
T |
|
| Q |
489 |
catcaggtacattttcaagtctcattgtcatagctatgttagaagttcattgtgtttccaagttagtattaactagtgaagattgttacgc-agttgttg |
587 |
Q |
| |
|
| ||||||| | ||| | || |||| | ||| ||||||| ||||| || ||| |||||||| | | |||| |||| | | | | | |||| ||| |
|
|
| T |
16354 |
cctcaggtatactttaacgtttcataattatatctatgtttgaagta----gt-tttgcaagttaggaatgactaatgaaaaatttgaacctagttcttg |
16448 |
T |
|
| Q |
588 |
aggatggatcaaactggagcatgggacaacgacagttattctgtttgggacgtgctcttttgagaagaagtaagattttggtattggacgaagcaactgc |
687 |
Q |
| |
|
| ||||||||||||||||| ||||||||| | |||||||||||||| || || ||||||||||| ||||||| ||| ||||| ||||||||||||||||| |
|
|
| T |
16449 |
aagatggatcaaactggagtatgggacaaaggcagttattctgtttagggcgcgctcttttgaggagaagtaggatattggtgttggacgaagcaactgc |
16548 |
T |
|
| Q |
688 |
gtcaattgataattctactgatctgattgtgcaaaaaa |
725 |
Q |
| |
|
||||||||||||||||||||||| ||| | ||||||| |
|
|
| T |
16549 |
ttcaattgataattctactgatcttattctacaaaaaa |
16586 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 85; Significance: 4e-40; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 69 - 357
Target Start/End: Original strand, 44814677 - 44814965
Alignment:
| Q |
69 |
ccacttgtacttcatggcatcacatgtacatttaaagcaggtcacaagattggtatttttggcagaacaggcagtgggtagtccactcttatcggtgctt |
168 |
Q |
| |
|
||||| ||||||| || ||||||||||||||| ||| ||| ||||| |||||||| |||| | || || ||||| || |||||||||| || |||| |
|
|
| T |
44814677 |
ccactagtacttcgcgggatcacatgtacatttgaaggaggacacaaaattggtatagttggtcgcaccggaagtggcaagaccactcttattggcgctt |
44814776 |
T |
|
| Q |
169 |
tatttcgccttgtggaaccagcaggcggaaaaattgtagttgacggcatagatatctcatctattggcctacatgatttgaggtcacgttttggtattat |
268 |
Q |
| |
|
||||||| || ||||| ||||| || |||||||| | ||||| ||||| || ||| || ||||| || ||||||||||||||||||||||||||||| |
|
|
| T |
44814777 |
tatttcgtctagtggagccagcgggtggaaaaatcattgttgatggcattgacatcggttccattggacttcatgatttgaggtcacgttttggtattat |
44814876 |
T |
|
| Q |
269 |
acctcaagatcctacactttttaacgggacagtaagatttaacttggaccctttatctcaacacaccgatcaagagatatgggaggtaa |
357 |
Q |
| |
|
|||||| || ||||| |||||||| || ||||| |||| || ||||| || || ||||||||| | |||||||||||||||||||||| |
|
|
| T |
44814877 |
acctcaggaccctactctttttaatggaacagtcagatacaatttggatcccttgtctcaacactctgatcaagagatatgggaggtaa |
44814965 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 427 - 505
Target Start/End: Original strand, 44815096 - 44815174
Alignment:
| Q |
427 |
gaaggttcttgggaagtgtcaattacgagaagtcgtccaagagaaagaagagggtttagattcatcaggtacattttca |
505 |
Q |
| |
|
||||||||||||||||||||| || | ||| | |||||||||||||||| |||||||| |||||||||||||||||| |
|
|
| T |
44815096 |
gaaggttcttgggaagtgtcagttgcaagaggctgtccaagagaaagaaggtggtttagactcatcaggtacattttca |
44815174 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 570 - 643
Target Start/End: Original strand, 44815438 - 44815511
Alignment:
| Q |
570 |
attgttacgcagttgttgaggatggatcaaactggagcatgggacaacgacagttattctgtttgggacgtgct |
643 |
Q |
| |
|
||||||| |||| ||||| ||||| |||| ||||||||||||||||| ||||||||||||||||| |||||| |
|
|
| T |
44815438 |
attgttatacagtggttgaagatggggcaaattggagcatgggacaacggcagttattctgtttgggccgtgct |
44815511 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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