View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2691_low_4 (Length: 345)

Name: NF2691_low_4
Description: NF2691
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2691_low_4
NF2691_low_4
[»] chr4 (4 HSPs)
chr4 (221-306)||(54208833-54208918)
chr4 (15-134)||(54209053-54209177)
chr4 (127-166)||(54208929-54208968)
chr4 (98-134)||(37576581-37576617)
[»] chr8 (3 HSPs)
chr8 (255-327)||(39923596-39923669)
chr8 (103-149)||(14998906-14998952)
chr8 (217-254)||(39923615-39923652)
[»] chr7 (2 HSPs)
chr7 (97-137)||(23344477-23344517)
chr7 (98-138)||(31852673-31852713)
[»] chr6 (2 HSPs)
chr6 (98-149)||(2559608-2559659)
chr6 (109-143)||(14283387-14283421)
[»] chr5 (1 HSPs)
chr5 (88-134)||(36581088-36581134)
[»] chr2 (3 HSPs)
chr2 (98-136)||(17797014-17797052)
chr2 (94-134)||(38147076-38147116)
chr2 (79-138)||(19984703-19984762)
[»] chr1 (1 HSPs)
chr1 (95-143)||(42883143-42883191)
[»] chr3 (1 HSPs)
chr3 (98-138)||(7546115-7546155)


Alignment Details
Target: chr4 (Bit Score: 82; Significance: 1e-38; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 221 - 306
Target Start/End: Complemental strand, 54208918 - 54208833
Alignment:
Q  221 ggatgcatgtgggccacgtcatgtgatttagacaatccattataagaaaatgaatgaggatgcatacgggccacctctgtgattta 306  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  54208918 ggatgcatgtgggccacgtcatgtgatttagacaatccattataagaaaatgaatgaggatgcatacgggccacctctctgattta 54208833  T

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Target: chr4; HSP #2
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 15 - 134
Target Start/End: Complemental strand, 54209177 - 54209053
Alignment:
Q  15 aatatctgaagatttttagaagttgacggggtgagaagttgctccatgaagaattccgctcttt-----aacggttatgttcagtcctaaagtaaatgtc 109  Q
    |||||||||||||||||||||||||| ||||||||| ||||||||||| ||||||| |||||||     |||||||||||||| ||| |||||||||||     
T  54209177 aatatctgaagatttttagaagttgagggggtgagatgttgctccatgtagaattctgctctttatctaaacggttatgttcattcccaaagtaaatgtt 54209078  T
Q  110 catattacccctgcgtgagttaact 134  Q
    ||||||| |||||||| ||||||||    
T  54209077 catattatccctgcgtaagttaact 54209053  T

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Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 127 - 166
Target Start/End: Complemental strand, 54208968 - 54208929
Alignment:
Q  127 agttaactcacgttagtattaaacatttcaaaatctatga 166  Q
    ||||||||||||||||| ||||||||||||||||||||||    
T  54208968 agttaactcacgttagttttaaacatttcaaaatctatga 54208929  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 98 - 134
Target Start/End: Original strand, 37576581 - 37576617
Alignment:
Q  98 aaagtaaatgtccatattacccctgcgtgagttaact 134  Q
    |||||||||||||||||||||||| ||||||||||||    
T  37576581 aaagtaaatgtccatattacccctacgtgagttaact 37576617  T

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Target: chr8 (Bit Score: 46; Significance: 3e-17; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 255 - 327
Target Start/End: Original strand, 39923596 - 39923669
Alignment:
Q  255 atccattataagaaaatgaatgaggatgcatacgggccacctc-tgtgatttagacagaatgttagcaactacc 327  Q
    |||||||||||||||||||||||| ||||||  ||||||| || |||||| |||||||||||||||||||||||    
T  39923596 atccattataagaaaatgaatgagaatgcatgtgggccacgtcatgtgatatagacagaatgttagcaactacc 39923669  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 103 - 149
Target Start/End: Complemental strand, 14998952 - 14998906
Alignment:
Q  103 aaatgtccatattacccctgcgtgagttaactcacgttagtattaaa 149  Q
    ||||||| | ||||||| ||||||||||||||||||||||| |||||    
T  14998952 aaatgtcaaaattacccatgcgtgagttaactcacgttagtgttaaa 14998906  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 217 - 254
Target Start/End: Original strand, 39923615 - 39923652
Alignment:
Q  217 atgaggatgcatgtgggccacgtcatgtgatttagaca 254  Q
    ||||| ||||||||||||||||||||||||| ||||||    
T  39923615 atgagaatgcatgtgggccacgtcatgtgatatagaca 39923652  T

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Target: chr7 (Bit Score: 37; Significance: 0.000000000008; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 97 - 137
Target Start/End: Original strand, 23344477 - 23344517
Alignment:
Q  97 taaagtaaatgtccatattacccctgcgtgagttaactcac 137  Q
    ||||||||||||||||||||||| |||||||||||||||||    
T  23344477 taaagtaaatgtccatattacccgtgcgtgagttaactcac 23344517  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 98 - 138
Target Start/End: Original strand, 31852673 - 31852713
Alignment:
Q  98 aaagtaaatgtccatattacccctgcgtgagttaactcacg 138  Q
    ||||||||||| |||||||||||||||| ||||||||||||    
T  31852673 aaagtaaatgttcatattacccctgcgtaagttaactcacg 31852713  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 98 - 149
Target Start/End: Complemental strand, 2559659 - 2559608
Alignment:
Q  98 aaagtaaatgtccatattacccctgcgtgagttaactcacgttagtattaaa 149  Q
    ||||||||||| |||||| | ||| |||||||||||||||||||||||||||    
T  2559659 aaagtaaatgttcatattgctcctacgtgagttaactcacgttagtattaaa 2559608  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 109 - 143
Target Start/End: Original strand, 14283387 - 14283421
Alignment:
Q  109 ccatattacccctgcgtgagttaactcacgttagt 143  Q
    |||||||||||||||||||||||||||||| ||||    
T  14283387 ccatattacccctgcgtgagttaactcacgctagt 14283421  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 88 - 134
Target Start/End: Complemental strand, 36581134 - 36581088
Alignment:
Q  88 gttcagtcctaaagtaaatgtccatattacccctgcgtgagttaact 134  Q
    ||||| ||| ||||||||||||||||||||||||| |||||||||||    
T  36581134 gttcattcccaaagtaaatgtccatattacccctgtgtgagttaact 36581088  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 98 - 136
Target Start/End: Complemental strand, 17797052 - 17797014
Alignment:
Q  98 aaagtaaatgtccatattacccctgcgtgagttaactca 136  Q
    |||||||||||||||||| ||||||||||||||||||||    
T  17797052 aaagtaaatgtccatattgcccctgcgtgagttaactca 17797014  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 94 - 134
Target Start/End: Complemental strand, 38147116 - 38147076
Alignment:
Q  94 tcctaaagtaaatgtccatattacccctgcgtgagttaact 134  Q
    ||||||||||||||| ||||||||| |||||||||||||||    
T  38147116 tcctaaagtaaatgttcatattacctctgcgtgagttaact 38147076  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 79 - 138
Target Start/End: Complemental strand, 19984762 - 19984703
Alignment:
Q  79 aacggttatgttcagtcctaaagtaaatgtccatattacccctgcgtgagttaactcacg 138  Q
    |||||||||| ||  | |||||||||||| ||| | ||||||||||||||||||||||||    
T  19984762 aacggttatgctcgtttctaaagtaaatgaccaaaatacccctgcgtgagttaactcacg 19984703  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 95 - 143
Target Start/End: Original strand, 42883143 - 42883191
Alignment:
Q  95 cctaaagtaaatgtccatattacccctgcgtgagttaactcacgttagt 143  Q
    |||||||||||||| ||||||  ||||||||||||||||||||| ||||    
T  42883143 cctaaagtaaatgttcatattgtccctgcgtgagttaactcacgctagt 42883191  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 98 - 138
Target Start/End: Original strand, 7546115 - 7546155
Alignment:
Q  98 aaagtaaatgtccatattacccctgcgtgagttaactcacg 138  Q
    |||||||||||||||||| ||| ||||||| ||||||||||    
T  7546115 aaagtaaatgtccatattgcccttgcgtgacttaactcacg 7546155  T

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