View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2691_low_5 (Length: 321)
Name: NF2691_low_5
Description: NF2691
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2691_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 177; Significance: 2e-95; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 18 - 206
Target Start/End: Original strand, 12598359 - 12598547
Alignment:
| Q |
18 |
aaaggttactagaacaattagttgtcaatccctgtatcatgagcccctgattagttaatcatgtaattaactaattattatactattaatctggactttc |
117 |
Q |
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| T |
12598359 |
aaaggttactagaacaattagttgtcaatcccagtatcatgagcccctgattagttaattatgtaattaactaattattatgctattaatctggactttc |
12598458 |
T |
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| Q |
118 |
tgtgagtgtcaatcaaaatcaaaattcaaaaaggtaaatatgtttaagaaataacagctcggtataagatgaagattaggaagctaatt |
206 |
Q |
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| T |
12598459 |
tgtgagtgtcaatcaaaatcaaaattcaaaaaggtaaatatgtttaagaaataacagctcggtataagatgaagattaggaagctaatt |
12598547 |
T |
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Target: chr8 (Bit Score: 72; Significance: 1e-32; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 71 - 193
Target Start/End: Complemental strand, 3376661 - 3376545
Alignment:
| Q |
71 |
gttaatcatgtaattaactaattattatactattaatctggactttctgtgagtgtcaatcaaaatcaaaattcaaaaaggtaaatatgtttaagaaata |
170 |
Q |
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| T |
3376661 |
gttaattatgtaattaactaattattatgctattaaactggactttttgtgagtgt------aaatcaaaattctaaaaggtaaatatgtttaacaaata |
3376568 |
T |
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| Q |
171 |
acagctcggtataagatgaagat |
193 |
Q |
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| T |
3376567 |
acagctcggtataagataaagat |
3376545 |
T |
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