View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2692_low_1 (Length: 461)
Name: NF2692_low_1
Description: NF2692
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2692_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 161; Significance: 1e-85; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 1 - 165
Target Start/End: Original strand, 40830519 - 40830683
Alignment:
| Q |
1 |
taggtaaagataatatggattatgtgaataacttatcttatgctaaatttttattctgataaggttatctgaaaaattatctatcaatattttttcaaag |
100 |
Q |
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| T |
40830519 |
taggtaaagataatatggattatgtgaataacttatcttatgctaaatttttattccgataaggttatctgaaaaattatctatcaatattttttcaaag |
40830618 |
T |
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| Q |
101 |
aatttataaatttccattggattcatggcacatattatatatttatgagaaaagagataagtatc |
165 |
Q |
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| T |
40830619 |
aatttataaatttccattggattcatggcacatattatatatttatgagaaaagagataagtatc |
40830683 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 321 - 444
Target Start/End: Original strand, 40830842 - 40830967
Alignment:
| Q |
321 |
atatatagagagagttattcatatcttaattatgcatatcatgtt--caatacataaatcataaaattgccaagcccatatctcaaggcatgtataattg |
418 |
Q |
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| T |
40830842 |
atatatatagagagttattcatatcttaattatgcatatcatgttttcaatacataaatcataaaattgccaagcccatatctcaaggcatgtataattg |
40830941 |
T |
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| Q |
419 |
agtattatacttaaacagacatattc |
444 |
Q |
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| T |
40830942 |
agtattatacttaaacagacatattc |
40830967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 259 - 288
Target Start/End: Original strand, 40830777 - 40830806
Alignment:
| Q |
259 |
ctgtatatgtatcaatgggttgttcatgtc |
288 |
Q |
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| T |
40830777 |
ctgtatatgtatcaatgggttgttcatgtc |
40830806 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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