View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2692_low_2 (Length: 207)
Name: NF2692_low_2
Description: NF2692
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2692_low_2 |
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| [»] scaffold0184 (1 HSPs) |
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| [»] scaffold0078 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 151; Significance: 4e-80; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 151; E-Value: 4e-80
Query Start/End: Original strand, 15 - 189
Target Start/End: Complemental strand, 5902790 - 5902616
Alignment:
| Q |
15 |
caaaggccatgtgattagtggcacaccatgcatcacgctctcaagtattgaattccagccacagtgactcaagaatccaccaactgatctgtgactaagg |
114 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5902790 |
caaaggccatgtgattagtggcacaccatgcatcacactctcaaggattgaattccagccacagtgactcaagaatccaccaactgatctgtgactaagt |
5902691 |
T |
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| Q |
115 |
atttcaatctgaggtgcccatgatggaataaccactccttgctccttggttctctccaagaacccaggtggtaaa |
189 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
5902690 |
gtttcaatctgaggtgcccatgatggaataaccatcccttgctccttggttctctccaagaacccaggtggtaaa |
5902616 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 18 - 189
Target Start/End: Complemental strand, 5906271 - 5906100
Alignment:
| Q |
18 |
aggccatgtgattagtggcacaccatgcatcacgctctcaagtattgaattccagccacagtgactcaagaatccaccaactgatctgtgactaaggatt |
117 |
Q |
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||||||||||||||||||||||||||||||| |||||||||| |||||| |||| ||||| |||||||||||||||||||||||| |||||||||||||| |
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| T |
5906271 |
aggccatgtgattagtggcacaccatgcatcgcgctctcaaggattgaactccaaccacaatgactcaagaatccaccaactgatatgtgactaaggatt |
5906172 |
T |
|
| Q |
118 |
tcaatctgaggtgcccatgatggaataaccactccttgctccttggttctctccaagaacccaggtggtaaa |
189 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||| |
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| T |
5906171 |
tcaatctgaggtgcccatgatggaataaccattccttgctccttggttctctccaagaacccagatggtaaa |
5906100 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 112; Significance: 8e-57; HSPs: 9)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 112; E-Value: 8e-57
Query Start/End: Original strand, 18 - 189
Target Start/End: Complemental strand, 2437023 - 2436852
Alignment:
| Q |
18 |
aggccatgtgattagtggcacaccatgcatcacgctctcaagtattgaattccagccacagtgactcaagaatccaccaactgatctgtgactaaggatt |
117 |
Q |
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||||||||||||||||||||||||||||| ||| |||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
2437023 |
aggccatgtgattagtggcacaccatgcaccacactctcaagggttgaattccagccacagtgactcaagaaaccaccaactgatctgtgactaaggatt |
2436924 |
T |
|
| Q |
118 |
tcaatctgaggtgcccatgatggaataaccactccttgctccttggttctctccaagaacccaggtggtaaa |
189 |
Q |
| |
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| || ||| |||||||||||||||||||||| ||||| |||||||||||||| | ||||||| ||||||| |
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| T |
2436923 |
tgaacctgtggtgcccatgatggaataaccatcccttgatccttggttctctctatgaacccacatggtaaa |
2436852 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 18 - 179
Target Start/End: Original strand, 2014818 - 2014979
Alignment:
| Q |
18 |
aggccatgtgattagtggcacaccatgcatcacgctctcaagtattgaattccagccacagtgactcaagaatccaccaactgatctgtgactaaggatt |
117 |
Q |
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|
||||||||||||||||||||||||||||| ||| |||||||| ||||||||||| ||||||||| ||||||| ||||||||||| ||||||| ||||||| |
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| T |
2014818 |
aggccatgtgattagtggcacaccatgcaacacactctcaagcattgaattccaaccacagtgagtcaagaacccaccaactgaactgtgacgaaggatt |
2014917 |
T |
|
| Q |
118 |
tcaatctgaggtgcccatgatggaataaccactccttgctccttggttctctccaagaaccc |
179 |
Q |
| |
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| |||||| |||||||||||||||||||||| ||||| ||||| ||||||||||||||||| |
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| T |
2014918 |
tgaatctgtggtgcccatgatggaataaccatcccttgttcctttgttctctccaagaaccc |
2014979 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 18 - 179
Target Start/End: Original strand, 2018201 - 2018362
Alignment:
| Q |
18 |
aggccatgtgattagtggcacaccatgcatcacgctctcaagtattgaattccagccacagtgactcaagaatccaccaactgatctgtgactaaggatt |
117 |
Q |
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|
||||||||||||||||||||||||||||| ||| |||||||| |||||||||| ||||||||| ||||||| ||||||||||| ||||||| ||||||| |
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| T |
2018201 |
aggccatgtgattagtggcacaccatgcaacacactctcaagcgttgaattccaaccacagtgagtcaagaacccaccaactgaactgtgacgaaggatt |
2018300 |
T |
|
| Q |
118 |
tcaatctgaggtgcccatgatggaataaccactccttgctccttggttctctccaagaaccc |
179 |
Q |
| |
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| |||||| |||||||||||||||||||||| ||||| ||||| |||||||||||||||| |
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| T |
2018301 |
tgaatctgtggtgcccatgatggaataaccatcccttgttccttttttctctccaagaaccc |
2018362 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 15 - 181
Target Start/End: Complemental strand, 1969226 - 1969060
Alignment:
| Q |
15 |
caaaggccatgtgattagtggcacaccatgcatcacgctctcaagtattgaattccagccacagtgactcaagaatccaccaactgatctgtgactaagg |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||| |||||||| |||||||||||||||| ||| ||||||||||||||| ||| ||||||| ||| |
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| T |
1969226 |
caaaggccatgtgattagtggcacaccatgcaacacactctcaagggttgaattccagccacaatgagtcaagaatccaccaattgagttgtgacttagg |
1969127 |
T |
|
| Q |
115 |
atttcaatctgaggtgcccatgatggaataaccactccttgctccttggttctctccaagaacccag |
181 |
Q |
| |
|
|||| |||||| || |||||||||| |||||| | |||| |||||||||||||||||||||||||| |
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| T |
1969126 |
atttgaatctgcggcgcccatgatgtaataacaaaacctttctccttggttctctccaagaacccag |
1969060 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 18 - 189
Target Start/End: Complemental strand, 1963611 - 1963440
Alignment:
| Q |
18 |
aggccatgtgattagtggcacaccatgcatcacgctctcaagtattgaattccagccacagtgactcaagaatccaccaactgatctgtgactaaggatt |
117 |
Q |
| |
|
|||||| ||||||||||||||||||| || ||| |||||||| |||||||||| ||||| ||| ||| || ||||||| || ||||||||||||||| |
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| T |
1963611 |
aggccaagtgattagtggcacaccatacaccacactctcaagggttgaattccaaccacaatgagacaaaaacccaccaatggaactgtgactaaggatt |
1963512 |
T |
|
| Q |
118 |
tcaatctgaggtgcccatgatggaataaccactccttgctccttggttctctccaagaacccaggtggtaaa |
189 |
Q |
| |
|
| |||||| |||||||||||||||| ||||| ||||| ||||||||||||||||| ||||||| ||||||| |
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| T |
1963511 |
tgaatctgtggtgcccatgatggaacaaccatcccttgttccttggttctctccaaaaacccagatggtaaa |
1963440 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 18 - 189
Target Start/End: Complemental strand, 1965281 - 1965110
Alignment:
| Q |
18 |
aggccatgtgattagtggcacaccatgcatcacgctctcaagtattgaattccagccacagtgactcaagaatccaccaactgatctgtgactaaggatt |
117 |
Q |
| |
|
||||||||||||||||||||| ||||||| ||| || ||||| |||| ||||| ||||||||||||||||| || |||| ||| || |||||||||||| |
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|
| T |
1965281 |
aggccatgtgattagtggcactccatgcaccacactttcaagggttgagttccaaccacagtgactcaagaaccctccaattgaactatgactaaggatt |
1965182 |
T |
|
| Q |
118 |
tcaatctgaggtgcccatgatggaataaccactccttgctccttggttctctccaagaacccaggtggtaaa |
189 |
Q |
| |
|
| |||||||||||||||||||| ||| || | |||| |||||| ||||||||||| ||||||| ||||||| |
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|
| T |
1965181 |
tgaatctgaggtgcccatgatgtaatgacaaaacctttctccttcgttctctccaaaaacccagatggtaaa |
1965110 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 18 - 189
Target Start/End: Original strand, 2011413 - 2011584
Alignment:
| Q |
18 |
aggccatgtgattagtggcacaccatgcatcacgctctcaagtattgaattccagccacagtgactcaagaatccaccaactgatctgtgactaaggatt |
117 |
Q |
| |
|
||||||||||||||||||||| ||||| | ||| || |||||| |||| |||| ||||||||||||||||| || |||||||| || |||||||||||| |
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| T |
2011413 |
aggccatgtgattagtggcaccccatgaaccacactttcaagtgttgagctccaaccacagtgactcaagaacccgccaactgaactatgactaaggatt |
2011512 |
T |
|
| Q |
118 |
tcaatctgaggtgcccatgatggaataaccactccttgctccttggttctctccaagaacccaggtggtaaa |
189 |
Q |
| |
|
| |||||||||||||||||||| ||| || | |||| ||| |||||||||||||| ||||||| ||||||| |
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|
| T |
2011513 |
tgaatctgaggtgcccatgatgtaatgacaaaaccttcctctttggttctctccaaaaacccagatggtaaa |
2011584 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 76; E-Value: 2e-35
Query Start/End: Original strand, 18 - 189
Target Start/End: Original strand, 2007798 - 2007969
Alignment:
| Q |
18 |
aggccatgtgattagtggcacaccatgcatcacgctctcaagtattgaattccagccacagtgactcaagaatccaccaactgatctgtgactaaggatt |
117 |
Q |
| |
|
|||||| ||||||| |||||||| |||| ||| |||||||| |||||||||||||||| || ||||||| ||||||||||| ||||||| |||||| |
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|
| T |
2007798 |
aggccacgtgattaacggcacaccgtgcaccacactctcaagggttgaattccagccacaatgcgtcaagaacccaccaactgagttgtgacttaggatt |
2007897 |
T |
|
| Q |
118 |
tcaatctgaggtgcccatgatggaataaccactccttgctccttggttctctccaagaacccaggtggtaaa |
189 |
Q |
| |
|
| |||||| || |||||||||| |||||| | |||| |||||||||||||||||||||||||| ||||||| |
|
|
| T |
2007898 |
tgaatctgcggcgcccatgatgtaataacaaaacctttctccttggttctctccaagaacccagatggtaaa |
2007969 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 18 - 179
Target Start/End: Original strand, 2004418 - 2004579
Alignment:
| Q |
18 |
aggccatgtgattagtggcacaccatgcatcacgctctcaagtattgaattccagccacagtgactcaagaatccaccaactgatctgtgactaaggatt |
117 |
Q |
| |
|
||||||||| ||||||||||||||||||| ||| ||||| || |||||||||||||||| ||| ||||||| || || ||||| ||||||| |||||| |
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|
| T |
2004418 |
aggccatgttattagtggcacaccatgcaccacactctctagggttgaattccagccacaatgagtcaagaacccgccgactgagttgtgacttaggatt |
2004517 |
T |
|
| Q |
118 |
tcaatctgaggtgcccatgatggaataaccactccttgctccttggttctctccaagaaccc |
179 |
Q |
| |
|
| |||||| || ||||||||| ||| || | |||| |||||||||||||||||||||||| |
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|
| T |
2004518 |
tgaatctgcggcacccatgatgtaatgacaaaacctttctccttggttctctccaagaaccc |
2004579 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0184 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0184
Description:
Target: scaffold0184; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 63 - 139
Target Start/End: Original strand, 15200 - 15276
Alignment:
| Q |
63 |
tgaattccagccacagtgactcaagaatccaccaactgatctgtgactaaggatttcaatctgaggtgcccatgatg |
139 |
Q |
| |
|
||||||||| ||||| ||||| || |||||||||||||| || || |||| ||||||| |||||||||||||||| |
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|
| T |
15200 |
tgaattccaaccacaatgacttaaaaatccaccaactgaactatgtttaagtatttcaacttgaggtgcccatgatg |
15276 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0078 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0078
Description:
Target: scaffold0078; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 63 - 139
Target Start/End: Complemental strand, 57644 - 57568
Alignment:
| Q |
63 |
tgaattccagccacagtgactcaagaatccaccaactgatctgtgactaaggatttcaatctgaggtgcccatgatg |
139 |
Q |
| |
|
||||||||| ||||| ||||| || |||||||||||||| || || |||| ||||||| |||||||||||||||| |
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|
| T |
57644 |
tgaattccaaccacaatgacttaaaaatccaccaactgaactatgtttaagtatttcaacttgaggtgcccatgatg |
57568 |
T |
|
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