View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2693_high_4 (Length: 273)
Name: NF2693_high_4
Description: NF2693
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2693_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 216; Significance: 1e-119; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 32 - 262
Target Start/End: Original strand, 55824119 - 55824350
Alignment:
| Q |
32 |
aaagcatcagtaagtttaatcatttcaaaaacaaaaagggatgttgctttttgttggagcactatctatt-actcaatcttctgtgctttatttcctatt |
130 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
55824119 |
aaagcatcagtaagtttaatcatttcaaaaacaaaaagggatgttgctttttgttggagcactatctatttactcaatcttctgtgctttatttcctatt |
55824218 |
T |
|
| Q |
131 |
tgtatgattgcaggtccattattatgtgcagtctcacattcaaatgaatgaatatcgcgattgtgtaatattggttagtattagtatttagagtcttcat |
230 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||| |
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| T |
55824219 |
tgtatgattgcaggtccattattatgtgcagtctcacattcaaatgaatgaatatcgcgatcgtgtcatattggttagtattagtatttagagtcttcat |
55824318 |
T |
|
| Q |
231 |
atttaacctattatttgacctttttgttctct |
262 |
Q |
| |
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|||||||||||||||||||||||||||||||| |
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| T |
55824319 |
atttaacctattatttgacctttttgttctct |
55824350 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 32 - 262
Target Start/End: Complemental strand, 56153331 - 56153102
Alignment:
| Q |
32 |
aaagcatcagtaagtttaatcatttcaaaaacaaaaagggatgttgctttttgttggagcactatctattactcaatcttctgtgctttatttcctattt |
131 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
56153331 |
aaagcatcggtaagtttaatcatttcaaaaacaaaaagggatgttgctttttgttggagcactatctattactcaatcttctgtgctt-atttcctattt |
56153233 |
T |
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| Q |
132 |
gtatgattgcaggtccattattatgtgcagtctcacattcaaatgaatgaatatcgcgattgtgtaatattggttagtattagtatttagagtcttcata |
231 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| ||||||| ||||||||||||||||| |
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| T |
56153232 |
gtatgattgcaggtccattattatgtgcagtctcacattcaaatgaatgaatatcgcgatcgtgtaatcttggtgagtattattatttagagtcttcata |
56153133 |
T |
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| Q |
232 |
tttaacctattatttgacctttttgttctct |
262 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
56153132 |
tttaacctattatttgacctttttgttctct |
56153102 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 138 - 205
Target Start/End: Complemental strand, 9888488 - 9888421
Alignment:
| Q |
138 |
ttgcaggtccattattatgtgcagtctcacattcaaatgaatgaatatcgcgattgtgtaatattggt |
205 |
Q |
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|||||||||||||||||||| ||||||||||||||||| ||||||||||| ||| ||||||| ||||| |
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| T |
9888488 |
ttgcaggtccattattatgttcagtctcacattcaaattaatgaatatcgtgatcgtgtaatcttggt |
9888421 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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