View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2693_low_1 (Length: 336)

Name: NF2693_low_1
Description: NF2693
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2693_low_1
NF2693_low_1
[»] chr6 (49 HSPs)
chr6 (1-320)||(26885578-26885897)
chr6 (112-267)||(26657523-26657678)
chr6 (112-267)||(26763494-26763649)
chr6 (112-263)||(25075432-25075583)
chr6 (112-263)||(26850277-26850428)
chr6 (137-263)||(26637193-26637319)
chr6 (137-263)||(26743159-26743285)
chr6 (147-267)||(26624811-26624931)
chr6 (147-267)||(26730788-26730908)
chr6 (147-257)||(27609633-27609743)
chr6 (147-257)||(27717012-27717122)
chr6 (159-264)||(27697114-27697219)
chr6 (112-264)||(26951295-26951447)
chr6 (116-264)||(26960677-26960825)
chr6 (147-267)||(27680511-27680631)
chr6 (147-267)||(28787802-28787922)
chr6 (147-267)||(28793923-28794043)
chr6 (147-260)||(25491820-25491933)
chr6 (147-276)||(26648010-26648139)
chr6 (147-276)||(26753978-26754107)
chr6 (147-263)||(27591528-27591644)
chr6 (112-260)||(27663681-27663829)
chr6 (145-264)||(2186369-2186488)
chr6 (112-264)||(26863123-26863279)
chr6 (147-258)||(31286114-31286225)
chr6 (151-265)||(27704780-27704894)
chr6 (150-263)||(27603211-27603324)
chr6 (112-260)||(26978936-26979084)
chr6 (147-263)||(27676127-27676243)
chr6 (147-263)||(26813102-26813218)
chr6 (133-265)||(27529806-27529938)
chr6 (159-265)||(25484607-25484713)
chr6 (147-265)||(26144416-26144534)
chr6 (147-265)||(25546531-25546649)
chr6 (147-265)||(26057470-26057588)
chr6 (147-265)||(26077440-26077558)
chr6 (150-256)||(26804018-26804124)
chr6 (173-265)||(28141089-28141181)
chr6 (159-262)||(25581273-25581376)
chr6 (173-264)||(29827541-29827632)
chr6 (159-265)||(25512439-25512545)
chr6 (112-258)||(26938581-26938727)
chr6 (147-265)||(29673528-29673646)
chr6 (112-265)||(26825376-26825533)
chr6 (173-264)||(29842528-29842619)
chr6 (178-264)||(28096993-28097079)
chr6 (173-263)||(29469759-29469849)
chr6 (193-265)||(28150726-28150798)
chr6 (208-265)||(29759026-29759083)
[»] chr1 (6 HSPs)
chr1 (112-265)||(28126162-28126315)
chr1 (133-265)||(266848-266980)
chr1 (112-269)||(28131974-28132130)
chr1 (147-264)||(26137434-26137551)
chr1 (147-260)||(5921988-5922101)
chr1 (3-44)||(28126048-28126089)
[»] chr2 (1 HSPs)
chr2 (122-265)||(17991688-17991831)
[»] chr4 (6 HSPs)
chr4 (112-263)||(18653960-18654111)
chr4 (112-263)||(18678040-18678191)
chr4 (112-267)||(18729978-18730133)
chr4 (112-263)||(18722553-18722704)
chr4 (112-263)||(18697883-18698034)
chr4 (112-263)||(18688097-18688248)
[»] scaffold0349 (1 HSPs)
scaffold0349 (147-257)||(2052-2162)
[»] scaffold1870 (1 HSPs)
scaffold1870 (147-265)||(332-450)
[»] scaffold0419 (1 HSPs)
scaffold0419 (147-265)||(9050-9168)
[»] chr8 (3 HSPs)
chr8 (147-240)||(29272351-29272444)
chr8 (147-264)||(16371647-16371764)
chr8 (173-265)||(12590286-12590378)
[»] scaffold0277 (2 HSPs)
scaffold0277 (147-262)||(3216-3331)
scaffold0277 (147-262)||(12179-12294)
[»] chr3 (1 HSPs)
chr3 (207-265)||(615341-615399)


Alignment Details
Target: chr6 (Bit Score: 232; Significance: 1e-128; HSPs: 49)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 320
Target Start/End: Complemental strand, 26885897 - 26885578
Alignment:
Q  1 ataatacaaataatatatagagaaatagatatgtaatgaagtggtnnnnnnnctagtatgggatgataagtccataaagagcaaaatcatggttnnnnnn 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||       |||||||| |||||||||||||||||||| ||||||||||||          
T  26885897 ataatacaaataatatatagagaaatagatatgtaatgaagtggtaaaaaaactagtatgagatgataagtccataaagagaaaaatcatggttaaaact 26885798  T
Q  101 nnnnnnnnnnnttgttcataaatatcaatcttacagtgttcttctgtaaaacatgaactatatcatcgtgacaccataacctactacgttctccaggctc 200  Q
               |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26885797 aaaacaaaaaattgttcataaatatcaatcttacagtgttcttctgtaaaacatgaactatatcatcgtgacaccataacctactacgttctccaggctc 26885698  T
Q  201 tttacttgattcttgccgaacgatttctttacccatgtcctccaccaagtcatgtaatgtcacatcaacatgatttcttgctgaacggtattgagtatta 300  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  26885697 tttacttgattcttgccgaacgatttctttacccatgtcctctaccaagtcatgtaatgtcacatcaacatgatttctcgctgaacggtattgagtatta 26885598  T
Q  301 atctttaagagagatttttc 320  Q
    ||||||||||||||||||||    
T  26885597 atctttaagagagatttttc 26885578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 112 - 267
Target Start/End: Complemental strand, 26657678 - 26657523
Alignment:
Q  112 ttgttcataaatatcaatcttacagtgttcttctgtaaaacatgaactatatcatcgtgacaccataacctactacgttctccaggctctttacttgatt 211  Q
    ||||||||| ||||||||||||| || |  |||||||||||||||||||| |||| ||||||||||||||||||||||||||| ||||||||||||||||    
T  26657678 ttgttcatagatatcaatcttacggtatctttctgtaaaacatgaactatgtcattgtgacaccataacctactacgttctccgggctctttacttgatt 26657579  T
Q  212 cttgccgaacgatttctttacccatgtcctccaccaagtcatgtaatgtcacatca 267  Q
    |||| || ||||||||||||||||||||||| | ||| || ||||||| |||||||    
T  26657578 cttgtcggacgatttctttacccatgtcctctatcaaatcgtgtaatgccacatca 26657523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 112 - 267
Target Start/End: Complemental strand, 26763649 - 26763494
Alignment:
Q  112 ttgttcataaatatcaatcttacagtgttcttctgtaaaacatgaactatatcatcgtgacaccataacctactacgttctccaggctctttacttgatt 211  Q
    ||||||||| ||||||||||||| || |  |||||||||||||||||||| |||| ||||||||||||||||||||||||||| ||||||||||||||||    
T  26763649 ttgttcatagatatcaatcttacggtatctttctgtaaaacatgaactatgtcattgtgacaccataacctactacgttctccgggctctttacttgatt 26763550  T
Q  212 cttgccgaacgatttctttacccatgtcctccaccaagtcatgtaatgtcacatca 267  Q
    |||| || ||||||||||||||||||||||| | ||| || ||||||| |||||||    
T  26763549 cttgtcggacgatttctttacccatgtcctctatcaaatcgtgtaatgccacatca 26763494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 112 - 263
Target Start/End: Complemental strand, 25075583 - 25075432
Alignment:
Q  112 ttgttcataaatatcaatcttacagtgttcttctgtaaaacatgaactatatcatcgtgacaccataacctactacgttctccaggctctttacttgatt 211  Q
    |||||||||||||| | ||||||  |||| ||||||||||||| || ||||||||||||| |||| ||||||||||||||||||||||||||| ||||||    
T  25075583 ttgttcataaatattattcttactttgttgttctgtaaaacatcaaatatatcatcgtgataccacaacctactacgttctccaggctctttaattgatt 25075484  T
Q  212 cttgccgaacgatttctttacccatgtcctccaccaagtcatgtaatgtcac 263  Q
    | || || ||||||||||||||||||||||| | ||||||||||||||||||    
T  25075483 catgtcggacgatttctttacccatgtcctctaacaagtcatgtaatgtcac 25075432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 112 - 263
Target Start/End: Complemental strand, 26850428 - 26850277
Alignment:
Q  112 ttgttcataaatatcaatcttacagtgttcttctgtaaaacatgaactatatcatcgtgacaccataacctactacgttctccaggctctttacttgatt 211  Q
    ||||||||| | ||||||||||| ||||| |  |||||||||||||| ||||||||   |||||| |||||||| ||   ||||||||||||| ||||||    
T  26850428 ttgttcatagaaatcaatcttactgtgttttcttgtaaaacatgaacaatatcatcacaacaccacaacctactgcgccttccaggctctttaattgatt 26850329  T
Q  212 cttgccgaacgatttctttacccatgtcctccaccaagtcatgtaatgtcac 263  Q
    |||| || ||||||||||||||||||||||| | ||||||||||||||||||    
T  26850328 cttgtcggacgatttctttacccatgtcctctatcaagtcatgtaatgtcac 26850277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 137 - 263
Target Start/End: Complemental strand, 26637319 - 26637193
Alignment:
Q  137 tgttcttctgtaaaacatgaactatatcatcgtgacaccataacctactacgttctccaggctctttacttgattcttgccgaacgatttctttacccat 236  Q
    |||| ||||||||||||||||||||||| || |||||||| |||||||| |||||||||||||  |||| ||||||||| || ||||||||| |||||||    
T  26637319 tgtttttctgtaaaacatgaactatatcgtcatgacaccacaacctactgcgttctccaggcttattacgtgattcttgtcggacgatttctatacccat 26637220  T
Q  237 gtcctccaccaagtcatgtaatgtcac 263  Q
     ||||| | ||||||||||||||||||    
T  26637219 atcctctatcaagtcatgtaatgtcac 26637193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 137 - 263
Target Start/End: Complemental strand, 26743285 - 26743159
Alignment:
Q  137 tgttcttctgtaaaacatgaactatatcatcgtgacaccataacctactacgttctccaggctctttacttgattcttgccgaacgatttctttacccat 236  Q
    |||| ||||||||||||||||||||||| || |||||||| |||||||| |||||||||||||  |||| ||||||||| || ||||||||| |||||||    
T  26743285 tgtttttctgtaaaacatgaactatatcgtcatgacaccacaacctactgcgttctccaggcttattacgtgattcttgtcggacgatttctatacccat 26743186  T
Q  237 gtcctccaccaagtcatgtaatgtcac 263  Q
     ||||| | ||||||||||||||||||    
T  26743185 atcctctatcaagtcatgtaatgtcac 26743159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 147 - 267
Target Start/End: Complemental strand, 26624931 - 26624811
Alignment:
Q  147 taaaacatgaactatatcatcgtgacaccataacctactacgttctccaggctctttacttgattcttgccgaacgatttctttacccatgtcctccacc 246  Q
    ||||||||||| ||||||||| ||||||||||| ||||| ||||||||||||||||||  ||||||||| || |||||| |||||||||||||||| | |    
T  26624931 taaaacatgaaatatatcatcttgacaccataatctacttcgttctccaggctctttaggtgattcttgtcggacgattgctttacccatgtcctctatc 26624832  T
Q  247 aagtcatgtaatgtcacatca 267  Q
    ||||||||||| |||| ||||    
T  26624831 aagtcatgtaaggtcatatca 26624811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 147 - 267
Target Start/End: Complemental strand, 26730908 - 26730788
Alignment:
Q  147 taaaacatgaactatatcatcgtgacaccataacctactacgttctccaggctctttacttgattcttgccgaacgatttctttacccatgtcctccacc 246  Q
    ||||||||||| ||||||||| ||||||||||| ||||| ||||||||||||||||||  ||||||||| || |||||| |||||||||||||||| | |    
T  26730908 taaaacatgaaatatatcatcttgacaccataatctacttcgttctccaggctctttaggtgattcttgtcggacgattgctttacccatgtcctctatc 26730809  T
Q  247 aagtcatgtaatgtcacatca 267  Q
    ||||||||||| |||| ||||    
T  26730808 aagtcatgtaaggtcatatca 26730788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 147 - 257
Target Start/End: Original strand, 27609633 - 27609743
Alignment:
Q  147 taaaacatgaactatatcatcgtgacaccataacctactacgttctccaggctctttacttgattcttgccgaacgatttctttacccatgtcctccacc 246  Q
    ||||||| ||||||||||||| ||||| ||||||||||| | |||||||||||||||| |||||||||| || |||| |||||||||||||||||| | |    
T  27609633 taaaacacgaactatatcatcctgacagcataacctacttctttctccaggctctttaattgattcttgtcggacgacttctttacccatgtcctctatc 27609732  T
Q  247 aagtcatgtaa 257  Q
    |||||||||||    
T  27609733 aagtcatgtaa 27609743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 147 - 257
Target Start/End: Original strand, 27717012 - 27717122
Alignment:
Q  147 taaaacatgaactatatcatcgtgacaccataacctactacgttctccaggctctttacttgattcttgccgaacgatttctttacccatgtcctccacc 246  Q
    ||||||| ||||||||||||| ||||| ||||||||||| | |||||||||||||||| |||||||||| || |||| |||||||||||||||||| | |    
T  27717012 taaaacacgaactatatcatcctgacagcataacctacttctttctccaggctctttaattgattcttgtcggacgacttctttacccatgtcctctatc 27717111  T
Q  247 aagtcatgtaa 257  Q
    |||||||||||    
T  27717112 aagtcatgtaa 27717122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 159 - 264
Target Start/End: Original strand, 27697114 - 27697219
Alignment:
Q  159 tatatcatcgtgacaccataacctactacgttctccaggctctttacttgattcttgccgaacgatttctttacccatgtcctccaccaagtcatgtaat 258  Q
    ||||||||| ||||| ||||||||||| | |||||||||||||||| |||||||||| || |||| |||||||||||||||||| | |||||||||||||    
T  27697114 tatatcatcctgacagcataacctacttctttctccaggctctttagttgattcttgtcggacgacttctttacccatgtcctctatcaagtcatgtaat 27697213  T
Q  259 gtcaca 264  Q
    ||||||    
T  27697214 gtcaca 27697219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 112 - 264
Target Start/End: Complemental strand, 26951447 - 26951295
Alignment:
Q  112 ttgttcataaatatcaatcttacagtgttcttctgtaaaacatgaactatatcatcgtgacaccataacctactacgttctccaggctctttacttgatt 211  Q
    ||||||| | ||||||||||||| ||||| |  |||||||||||||| ||||||||  || |||| |||||||| ||||||||||| ||| || ||||||    
T  26951447 ttgttcacagatatcaatcttactgtgttttcttgtaaaacatgaacaatatcatcacgagaccacaacctactgcgttctccaggttctctaattgatt 26951348  T
Q  212 cttgccgaacgatttctttacccatgtcctccaccaagtcatgtaatgtcaca 264  Q
    |||| || | ||||||| ||||||| ||||| | |||||||||||||||||||    
T  26951347 cttgtcggatgatttctatacccatatcctctatcaagtcatgtaatgtcaca 26951295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 116 - 264
Target Start/End: Complemental strand, 26960825 - 26960677
Alignment:
Q  116 tcataaatatcaatcttacagtgttcttctgtaaaacatgaactatatcatcgtgacaccataacctactacgttctccaggctctttacttgattcttg 215  Q
    ||||| |||||||||||||  | || |  |||||||||||||||||||||||  ||||||| |||||||| |||| ||||||||||||| ||||||| ||    
T  26960825 tcatatatatcaatcttacttttttttcttgtaaaacatgaactatatcatcacgacaccacaacctactgcgttttccaggctctttaattgattcctg 26960726  T
Q  216 ccgaacgatttctttacccatgtcctccaccaagtcatgtaatgtcaca 264  Q
     ||||| |||||  ||||||| ||||| | |||||||||||||||||||    
T  26960725 tcgaacaatttccatacccatatcctctatcaagtcatgtaatgtcaca 26960677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 147 - 267
Target Start/End: Complemental strand, 27680631 - 27680511
Alignment:
Q  147 taaaacatgaactatatcatcgtgacaccataacctactacgttctccaggctctttacttgattcttgccgaacgatttctttacccatgtcctccacc 246  Q
    ||||||||||| |||||| || |||| |||||||||||| ||||||||||||||||||  ||||||||| || |||| |||||||||||||||||  | |    
T  27680631 taaaacatgaattatatcttcttgacgccataacctacttcgttctccaggctctttaggtgattcttgtcggacgacttctttacccatgtcctttatc 27680532  T
Q  247 aagtcatgtaatgtcacatca 267  Q
    |||||||||||| ||||||||    
T  27680531 aagtcatgtaatctcacatca 27680511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 147 - 267
Target Start/End: Complemental strand, 28787922 - 28787802
Alignment:
Q  147 taaaacatgaactatatcatcgtgacaccataacctactacgttctccaggctctttacttgattcttgccgaacgatttctttacccatgtcctccacc 246  Q
    |||||||| |||||||||||| ||||||||||||||||| | ||||||||||||||||   |||||||| || |||| ||||||||||||||| || | |    
T  28787922 taaaacattaactatatcatcttgacaccataacctacttctttctccaggctctttaggcgattcttgtcggacgacttctttacccatgtcttctatc 28787823  T
Q  247 aagtcatgtaatgtcacatca 267  Q
    |||||||||||| ||||||||    
T  28787822 aagtcatgtaatctcacatca 28787802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 147 - 267
Target Start/End: Complemental strand, 28794043 - 28793923
Alignment:
Q  147 taaaacatgaactatatcatcgtgacaccataacctactacgttctccaggctctttacttgattcttgccgaacgatttctttacccatgtcctccacc 246  Q
    |||||||| |||||||||||| ||||||||||||||||| | ||||||||||||||||   |||||||| || |||| ||||||||||||||| || | |    
T  28794043 taaaacattaactatatcatcttgacaccataacctacttctttctccaggctctttaggcgattcttgtcggacgacttctttacccatgtcttctatc 28793944  T
Q  247 aagtcatgtaatgtcacatca 267  Q
    |||||||||||| ||||||||    
T  28793943 aagtcatgtaatctcacatca 28793923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 147 - 260
Target Start/End: Original strand, 25491820 - 25491933
Alignment:
Q  147 taaaacatgaactatatcatcgtgacaccataacctactacgttctccaggctctttacttgattcttgccgaacgatttctttacccatgtcctccacc 246  Q
    |||||| ||||| ||||||||| ||||||| |||||||||||||||||||| || |||| ||||||||| ||||||| |||||||||||||| ||| | |    
T  25491820 taaaacttgaaccatatcatcgggacaccacaacctactacgttctccaggatcattacgtgattcttgtcgaacgacttctttacccatgtgctctatc 25491919  T
Q  247 aagtcatgtaatgt 260  Q
    |||| |||||||||    
T  25491920 aagttatgtaatgt 25491933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 147 - 276
Target Start/End: Complemental strand, 26648139 - 26648010
Alignment:
Q  147 taaaacatgaactatatcatcgtgacaccataacctactacgttctccaggctctttacttgattcttgccgaacgatttctttacccatgtcctccacc 246  Q
    ||||||||||||||| ||||| |||||||||||||||||  |||||||||||||||||| ||||||||| || || | ||| |||||||||||||  | |    
T  26648139 taaaacatgaactatttcatcttgacaccataacctactttgttctccaggctctttacgtgattcttgtcggactacttccttacccatgtcctttatc 26648040  T
Q  247 aagtcatgtaatgtcacatcaacatgattt 276  Q
    |||||||||||| ||| || | ||||||||    
T  26648039 aagtcatgtaatctcagataaccatgattt 26648010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 147 - 276
Target Start/End: Complemental strand, 26754107 - 26753978
Alignment:
Q  147 taaaacatgaactatatcatcgtgacaccataacctactacgttctccaggctctttacttgattcttgccgaacgatttctttacccatgtcctccacc 246  Q
    ||||||||||||||| ||||| |||||||||||||||||  |||||||||||||||||| ||||||||| || || | ||| |||||||||||||  | |    
T  26754107 taaaacatgaactatttcatcttgacaccataacctactttgttctccaggctctttacgtgattcttgtcggactacttccttacccatgtcctttatc 26754008  T
Q  247 aagtcatgtaatgtcacatcaacatgattt 276  Q
    |||||||||||| ||| || | ||||||||    
T  26754007 aagtcatgtaatctcagataaccatgattt 26753978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 147 - 263
Target Start/End: Original strand, 27591528 - 27591644
Alignment:
Q  147 taaaacatgaactatatcatcgtgacaccataacctactacgttctccaggctctttacttgattcttgccgaacgatttctttacccatgtcctccacc 246  Q
    ||||||||||||||||||||| ||| |||||||||| || | ||||||||||||||||  ||||||||| || |||| ||||||||||||| |||| | |    
T  27591528 taaaacatgaactatatcatcttgagaccataacctgcttctttctccaggctctttaggtgattcttgtcggacgacttctttacccatgacctctatc 27591627  T
Q  247 aagtcatgtaatgtcac 263  Q
    || ||||||||||||||    
T  27591628 aattcatgtaatgtcac 27591644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 112 - 260
Target Start/End: Original strand, 27663681 - 27663829
Alignment:
Q  112 ttgttcataaatatcaatcttacagtgttcttctgtaaaacatgaactatatcatcgtgacaccataacctactacgttctccaggctctttacttgatt 211  Q
    ||||||||| ||||||||||||| ||||| |  | |||||||||| |||||||||| |||| ||| |||||| | || ||||||||||||||| ||||||    
T  27663681 ttgttcatagatatcaatcttactgtgttttgttttaaaacatgagctatatcatcatgacgccacaacctagtgcgctctccaggctctttaattgatt 27663780  T
Q  212 cttgccgaacgatttctttacccatgtcctccaccaagtcatgtaatgt 260  Q
    |||| || || |||||| ||||||| | ||| | |||||||||||||||    
T  27663781 cttgtcggactatttctatacccatatactctatcaagtcatgtaatgt 27663829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 145 - 264
Target Start/End: Complemental strand, 2186488 - 2186369
Alignment:
Q  145 tgtaaaacatgaactatatcatcgtgacaccataacctactacgttctccaggctctttacttgattcttgccgaacgatttctttacccatgtcctcca 244  Q
    ||||||||| |||||||||| || ||  |||| ||||||||||||| ||||||||||||   ||||||||| || ||||||||||||||||| ||||| |    
T  2186488 tgtaaaacaggaactatatcttcatgggaccacaacctactacgttttccaggctcttttggtgattcttgtcgtacgatttctttacccatttcctcta 2186389  T
Q  245 ccaagtcatgtaatgtcaca 264  Q
     |||||||||||||||||||    
T  2186388 tcaagtcatgtaatgtcaca 2186369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 112 - 264
Target Start/End: Complemental strand, 26863279 - 26863123
Alignment:
Q  112 ttgttcataaatatcaatcttac----agtgttcttctgtaaaacatgaactatatcatcgtgacaccataacctactacgttctccaggctctttactt 207  Q
    |||||||||||||||||||||||    |||||| |  | |||||| || | ||||||||| ||||||||||||||||| ||||| || |||||||||       
T  26863279 ttgttcataaatatcaatcttactcacagtgttttcttctaaaacgtggattatatcatcatgacaccataacctacttcgttcacccggctctttagga 26863180  T
Q  208 gattcttgccgaacgatttctttacccatgtcctccaccaagtcatgtaatgtcaca 264  Q
    |||||||| || ||||||||||| ||||||||||| | ||||||||||||| |||||    
T  26863179 gattcttgtcggacgatttctttgcccatgtcctctatcaagtcatgtaatctcaca 26863123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 147 - 258
Target Start/End: Complemental strand, 31286225 - 31286114
Alignment:
Q  147 taaaacatgaactatatcatcgtgacaccataacctactacgttctccaggctctttacttgattcttgccgaacgatttctttacccatgtcctccacc 246  Q
    |||| |||||||||||||||| |||||||||| |||||| | |||||| |||||||||  ||||||||| || |||| |||||||||||||||||| | |    
T  31286225 taaagcatgaactatatcatcttgacaccatagcctacttctttctcctggctctttaggtgattcttgtcggacgacttctttacccatgtcctctatc 31286126  T
Q  247 aagtcatgtaat 258  Q
    ||||||||||||    
T  31286125 aagtcatgtaat 31286114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 151 - 265
Target Start/End: Original strand, 27704780 - 27704894
Alignment:
Q  151 acatgaactatatcatcgtgacaccataacctactacgttctccaggctctttacttgattcttgccgaacgatttctttacccatgtcctccaccaagt 250  Q
    |||| |||||||||||| || || ||||||||||| | |||||||||||||||| |||||||||| || |||| |||||||||||| ||||| | |||||    
T  27704780 acattaactatatcatcatggcagcataacctacttctttctccaggctctttaattgattcttgtcggacgacttctttacccatatcctctatcaagt 27704879  T
Q  251 catgtaatgtcacat 265  Q
     ||||||||||||||    
T  27704880 tatgtaatgtcacat 27704894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 150 - 263
Target Start/End: Original strand, 27603211 - 27603324
Alignment:
Q  150 aacatgaactatatcatcgtgacaccataacctactacgttctccaggctctttacttgattcttgccgaacgatttctttacccatgtcctccaccaag 249  Q
    ||||||||||||||| || ||||||||||||||||| | ||||||||||||||||  ||||||||| || |||| |||||||||||||||||| | ||||    
T  27603211 aacatgaactatatcgtcttgacaccataacctacttctttctccaggctctttaggtgattcttgtcggacgacttctttacccatgtcctctatcaag 27603310  T
Q  250 tcatgtaatgtcac 263  Q
    | ||| | ||||||    
T  27603311 ttatgcagtgtcac 27603324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 112 - 260
Target Start/End: Complemental strand, 26979084 - 26978936
Alignment:
Q  112 ttgttcataaatatcaatcttacagtgttcttctgtaaaacatgaactatatcatcgtgacaccataacctactacgttctccaggctctttacttgatt 211  Q
    ||||||| | ||||||| ||||| ||||| |  ||||||||||||||||||  ||   ||||||| |||||||| ||||||||||| |||||| ||||||    
T  26979084 ttgttcacagatatcaaacttactgtgttttcttgtaaaacatgaactatactattacgacaccacaacctactgcgttctccaggttctttaattgatt 26978985  T
Q  212 cttgccgaacgatttctttacccatgtcctccaccaagtcatgtaatgt 260  Q
    |||| || ||||||||| ||||||| ||||| | ||||| |||||||||    
T  26978984 cttgtcggacgatttctatacccatatcctctatcaagtaatgtaatgt 26978936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 147 - 263
Target Start/End: Original strand, 27676127 - 27676243
Alignment:
Q  147 taaaacatgaactatatcatcgtgacaccataacctactacgttctccaggctctttacttgattcttgccgaacgatttctttacccatgtcctccacc 246  Q
    ||||||||||||||||||||| ||| |||||||||| || | ||||||||||||||||  ||||||||| || || | ||||||||||||| |||| | |    
T  27676127 taaaacatgaactatatcatcttgagaccataacctgcttctttctccaggctctttaggtgattcttgtcggaccacttctttacccatgacctctatc 27676226  T
Q  247 aagtcatgtaatgtcac 263  Q
    || ||||||||||||||    
T  27676227 aattcatgtaatgtcac 27676243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 147 - 263
Target Start/End: Complemental strand, 26813218 - 26813102
Alignment:
Q  147 taaaacatgaactatatcatcgtgacaccataacctactacgttctccaggctctttacttgattcttgccgaacgatttctttacccatgtcctccacc 246  Q
    ||||||||||||||||||||| |||||||||| |||||| |||||||| || |||| |  |||||||||  | || |||||||||||| ||| ||| | |    
T  26813218 taaaacatgaactatatcatcttgacaccatagcctacttcgttctcctggttcttcaggtgattcttgttggacaatttctttacccgtgtgctctatc 26813119  T
Q  247 aagtcatgtaatgtcac 263  Q
    |||||||||||||||||    
T  26813118 aagtcatgtaatgtcac 26813102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 133 - 265
Target Start/End: Original strand, 27529806 - 27529938
Alignment:
Q  133 acagtgttcttctgtaaaacatgaactatatcatcgtgacaccataacctactacgttctccaggctctttacttgattcttgccgaacgatttctttac 232  Q
    |||||||| || | |||||||||||||||||||   | | |||| |||||||| |||||||||||||| |    ||||||||| || |||| ||||||||    
T  27529806 acagtgtttttttttaaaacatgaactatatcacgctcaaaccacaacctactgcgttctccaggctcatcgggtgattcttgtcggacgacttctttac 27529905  T
Q  233 ccatgtcctccaccaagtcatgtaatgtcacat 265  Q
    |||||||||| | ||||||||||||||||||||    
T  27529906 ccatgtcctctatcaagtcatgtaatgtcacat 27529938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 159 - 265
Target Start/End: Complemental strand, 25484713 - 25484607
Alignment:
Q  159 tatatcatcgtgacaccataacctactacgttctccaggctctttacttgattcttgccgaacgatttctttacccatgtcctccaccaagtcatgtaat 258  Q
    ||||||||||||| |||| |||||||| |||||||||||||  ||    |||||||| ||||||| |||||||||||||||||| | ||||||||||||     
T  25484713 tatatcatcgtgaaaccacaacctactgcgttctccaggcttcttgggagattcttgtcgaacgacttctttacccatgtcctctatcaagtcatgtaag 25484614  T
Q  259 gtcacat 265  Q
    |||||||    
T  25484613 gtcacat 25484607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 147 - 265
Target Start/End: Complemental strand, 26144534 - 26144416
Alignment:
Q  147 taaaacatgaactatatcatcgtgacaccataacctactacgttctccaggctctttacttgattcttgccgaacgatttctttacccatgtcctccacc 246  Q
    |||||| | ||||||||||||| || |||| |||||||| |||||||||||||  ||    |||||||| || ||||||||||||||||||||||| | |    
T  26144534 taaaacgttaactatatcatcgggaaaccacaacctactgcgttctccaggcttgttgggagattcttgtcggacgatttctttacccatgtcctctatc 26144435  T
Q  247 aagtcatgtaatgtcacat 265  Q
    ||||||||||| |||||||    
T  26144434 aagtcatgtaaggtcacat 26144416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 147 - 265
Target Start/End: Complemental strand, 25546649 - 25546531
Alignment:
Q  147 taaaacatgaactatatcatcgtgacaccataacctactacgttctccaggctctttacttgattcttgccgaacgatttctttacccatgtcctccacc 246  Q
    |||||| | ||||||||||||| || |||| |||||||| |||||||||||||  ||    |||||||| || |||| |||||||||||||||||| | |    
T  25546649 taaaacgttaactatatcatcgcgaaaccacaacctactgcgttctccaggcttgttgggagattcttgtcggacgacttctttacccatgtcctctatc 25546550  T
Q  247 aagtcatgtaatgtcacat 265  Q
    ||||||||||| |||||||    
T  25546549 aagtcatgtaaggtcacat 25546531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 147 - 265
Target Start/End: Complemental strand, 26057588 - 26057470
Alignment:
Q  147 taaaacatgaactatatcatcgtgacaccataacctactacgttctccaggctctttacttgattcttgccgaacgatttctttacccatgtcctccacc 246  Q
    |||||| | ||||||||||||| || |||| |||||||| |||||||||||||  ||    |||||||| || |||| |||||||||||||||||| | |    
T  26057588 taaaacgttaactatatcatcgcgaaaccacaacctactgcgttctccaggcttattgggagattcttgtcggacgacttctttacccatgtcctctatc 26057489  T
Q  247 aagtcatgtaatgtcacat 265  Q
    ||||||||||| |||||||    
T  26057488 aagtcatgtaaggtcacat 26057470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #36
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 147 - 265
Target Start/End: Complemental strand, 26077558 - 26077440
Alignment:
Q  147 taaaacatgaactatatcatcgtgacaccataacctactacgttctccaggctctttacttgattcttgccgaacgatttctttacccatgtcctccacc 246  Q
    |||||| | ||||||||||||| || |||| |||||||| |||||||||||||  ||    |||||||| || |||| |||||||||||||||||| | |    
T  26077558 taaaacgttaactatatcatcgcgaaaccacaacctactgcgttctccaggcttcttgggagattcttgtcggacgacttctttacccatgtcctctatc 26077459  T
Q  247 aagtcatgtaatgtcacat 265  Q
    ||||||||||| |||||||    
T  26077458 aagtcatgtaaggtcacat 26077440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #37
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 150 - 256
Target Start/End: Complemental strand, 26804124 - 26804018
Alignment:
Q  150 aacatgaactatatcatcgtgacaccataacctactacgttctccaggctctttacttgattcttgccgaacgatttctttacccatgtcctccaccaag 249  Q
    ||||||||||||||| || |||| |||||||||||| |||| | |||| ||||||  ||||||||| || |||| |||||||||||||||||  | ||||    
T  26804124 aacatgaactatatcttcatgacgccataacctacttcgtttttcaggatctttaggtgattcttgtcggacgacttctttacccatgtcctttatcaag 26804025  T
Q  250 tcatgta 256  Q
    |||||||    
T  26804024 tcatgta 26804018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #38
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 173 - 265
Target Start/End: Complemental strand, 28141181 - 28141089
Alignment:
Q  173 accataacctactacgttctccaggctctttacttgattcttgccgaacgatttctttacccatgtcctccaccaagtcatgtaatgtcacat 265  Q
    ||||||| ||||| ||||  |||||||||||   ||||||||| ||||| |||||||||||||| ||||| | ||||||||||||||||||||    
T  28141181 accataatctactccgtttcccaggctcttttggtgattcttgtcgaacaatttctttacccatctcctctatcaagtcatgtaatgtcacat 28141089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #39
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 159 - 262
Target Start/End: Complemental strand, 25581376 - 25581273
Alignment:
Q  159 tatatcatcgtgacaccataacctactacgttctccaggctctttacttgattcttgccgaacgatttctttacccatgtcctccaccaagtcatgtaat 258  Q
    ||||||||||||| |||| |||||||| ||||||||||| |  ||    |||||||| || ||||||||||||||||||||||| | ||||||||||||     
T  25581376 tatatcatcgtgaaaccacaacctactgcgttctccagggttcttgggagattcttgtcggacgatttctttacccatgtcctctatcaagtcatgtaag 25581277  T
Q  259 gtca 262  Q
    ||||    
T  25581276 gtca 25581273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #40
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 173 - 264
Target Start/End: Complemental strand, 29827632 - 29827541
Alignment:
Q  173 accataacctactacgttctccaggctctttacttgattcttgccgaacgatttctttacccatgtcctccaccaagtcatgtaatgtcaca 264  Q
    |||| ||||||||||| | ||||||||||||   ||||||||| || || ||||||||||||||||| || | |||||||||||||||||||    
T  29827632 accacaacctactacgctttccaggctctttcggtgattcttgtcgtacaatttctttacccatgtcttctatcaagtcatgtaatgtcaca 29827541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #41
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 159 - 265
Target Start/End: Complemental strand, 25512545 - 25512439
Alignment:
Q  159 tatatcatcgtgacaccataacctactacgttctccaggctctttacttgattcttgccgaacgatttctttacccatgtcctccaccaagtcatgtaat 258  Q
    |||||||||| || |||| |||||||| |||||||||||||  ||    |||||||| || ||| ||||||||||||||||||| | ||||||||||||     
T  25512545 tatatcatcgcgaaaccacaacctactgcgttctccaggcttgttgggagattcttgtcggacggtttctttacccatgtcctctatcaagtcatgtaag 25512446  T
Q  259 gtcacat 265  Q
    |||||||    
T  25512445 gtcacat 25512439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #42
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 112 - 258
Target Start/End: Complemental strand, 26938727 - 26938581
Alignment:
Q  112 ttgttcataaatatcaatcttacagtgttcttctgtaaaacatgaactatatcatcgtgacaccataacctactacgttctccaggctctttacttgatt 211  Q
    |||||||||  |||||||||||| || || |  | ||| |||||||||||||| | || | |||| || ||| | |||||||||| ||||||   |||||    
T  26938727 ttgttcatacttatcaatcttaccgtattttcttttaatacatgaactatatctttgtcaaaccacaatctagtgcgttctccagcctctttgactgatt 26938628  T
Q  212 cttgccgaacgatttctttacccatgtcctccaccaagtcatgtaat 258  Q
    |||| | ||| |||||||||||||||||||| | |||||||||||||    
T  26938627 cttgtctaacaatttctttacccatgtcctcaatcaagtcatgtaat 26938581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #43
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 147 - 265
Target Start/End: Original strand, 29673528 - 29673646
Alignment:
Q  147 taaaacatgaactatatcatcgtgacaccataacctactacgttctccaggctctttacttgattcttgccgaacgatttctttacccatgtcctccacc 246  Q
    |||||| |||| |||||| |||  | |||||||||||||||||| |||||| |||| |  || |||||| | ||| |||||||| ||||| ||||| |||    
T  29673528 taaaacttgaattatatcttcggaaaaccataacctactacgttttccaggatcttcaggtgcttcttgtctaacaatttcttttcccatatcctctacc 29673627  T
Q  247 aagtcatgtaatgtcacat 265  Q
    || ||||||||||||||||    
T  29673628 aaatcatgtaatgtcacat 29673646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #44
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 112 - 265
Target Start/End: Complemental strand, 26825533 - 26825376
Alignment:
Q  112 ttgttcataaatatcaatcttaca----gtgttcttctgtaaaacatgaactatatcatcgtgacaccataacctactacgttctccaggctctttactt 207  Q
    |||||||||||||||||||||||     |||||   ||| ||||||||||  ||||||| ||||||||| | ||| || ||||| || |||||||||  |    
T  26825533 ttgttcataaatatcaatcttactcactgtgtttccctgcaaaacatgaataatatcattgtgacaccacagcctgctgcgttcaccgggctctttagat 26825434  T
Q  208 gattcttgccgaacgatttctttacccatgtcctccaccaagtcatgtaatgtcacat 265  Q
    |||| ||| || || | |||||| ||||||||||  | ||||||||||||||||||||    
T  26825433 gattgttgtcggactacttctttgcccatgtcctttatcaagtcatgtaatgtcacat 26825376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #45
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 173 - 264
Target Start/End: Original strand, 29842528 - 29842619
Alignment:
Q  173 accataacctactacgttctccaggctctttacttgattcttgccgaacgatttctttacccatgtcctccaccaagtcatgtaatgtcaca 264  Q
    |||| ||||||||| | | ||||||||||||  |||||||| | || || ||||||||||||||||| || | ||||||||||| |||||||    
T  29842528 accacaacctactatgctttccaggctctttcgttgattctggtcgtacaatttctttacccatgtcttctatcaagtcatgtagtgtcaca 29842619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #46
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 178 - 264
Target Start/End: Original strand, 28096993 - 28097079
Alignment:
Q  178 aacctactacgttctccaggctctttacttgattcttgccgaacgatttctttacccatgtcctccaccaagtcatgtaatgtcaca 264  Q
    ||||| ||||||| |||||| |||||   ||||||||| |  || ||||||||||||||||| || | |||||||||||||||||||    
T  28096993 aacctgctacgttttccaggttcttttggtgattcttgtcttacaatttctttacccatgtcttctatcaagtcatgtaatgtcaca 28097079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #47
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 173 - 263
Target Start/End: Complemental strand, 29469849 - 29469759
Alignment:
Q  173 accataacctactacgttctccaggctctttacttgattcttgccgaacgatttctttacccatgtcctccaccaagtcatgtaatgtcac 263  Q
    ||||||||||||| |||| |||||| |||| |  ||||||||| | ||| |||||||| ||||| ||||| | ||| ||||||||||||||    
T  29469849 accataacctactgcgttttccaggatcttcaggtgattcttgtctaacaatttctttccccatatcctctatcaaatcatgtaatgtcac 29469759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #48
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 193 - 265
Target Start/End: Complemental strand, 28150798 - 28150726
Alignment:
Q  193 ccaggctctttacttgattcttgccgaacgatttctttacccatgtcctccaccaagtcatgtaatgtcacat 265  Q
    |||||||||||   ||||||||| || || ||||||||||||||||| || | ||||||||||||||| ||||    
T  28150798 ccaggctcttttggtgattcttgtcgtacaatttctttacccatgtcttctatcaagtcatgtaatgttacat 28150726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #49
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 208 - 265
Target Start/End: Original strand, 29759026 - 29759083
Alignment:
Q  208 gattcttgccgaacgatttctttacccatgtcctccaccaagtcatgtaatgtcacat 265  Q
    |||||||| | ||| |||||||||||||| ||||| ||||| ||||| ||||||||||    
T  29759026 gattcttgtctaacaatttctttacccatatcctctaccaaatcatgcaatgtcacat 29759083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 94; Significance: 7e-46; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 112 - 265
Target Start/End: Original strand, 28126162 - 28126315
Alignment:
Q  112 ttgttcataaatatcaatcttacagtgttcttctgtaaaacatgaactatatcatcgtgacaccataacctactacgttctccaggctctttacttgatt 211  Q
    ||||||||| ||||||||||||| ||||| ||||||| ||||||||||||||||| |||||||||||||||  | ||||||||||||||||||| |||||    
T  28126162 ttgttcatagatatcaatcttaccgtgtttttctgtagaacatgaactatatcattgtgacaccataacctgttgcgttctccaggctctttacgtgatt 28126261  T
Q  212 cttgccgaacgatttctttacccatgtcctccaccaagtcatgtaatgtcacat 265  Q
    ||| ||| ||||||||||||||| | ||||| | ||||||||||||||||||||    
T  28126262 ctttccggacgatttctttacccgtatcctctatcaagtcatgtaatgtcacat 28126315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 133 - 265
Target Start/End: Original strand, 266848 - 266980
Alignment:
Q  133 acagtgttcttctgtaaaacatgaactatatcatcgtgacaccataacctactacgttctccaggctctttacttgattcttgccgaacgatttctttac 232  Q
    |||||||| || | ||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||  ||||||||| || || | ||||||||    
T  266848 acagtgtttttatttaaaacatgaactatatcatcttgacaccataacctacttcgttctccaggctctttaggtgattcttggcggaccacttctttac 266947  T
Q  233 ccatgtcctccaccaagtcatgtaatgtcacat 265  Q
    |||||||||| | || |||||||||||||||||    
T  266948 ccatgtcctctatcatgtcatgtaatgtcacat 266980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 112 - 269
Target Start/End: Original strand, 28131974 - 28132130
Alignment:
Q  112 ttgttcataaatatcaatcttacagtgttcttctgtaaaacatgaactatatcatcgtgacaccataacctactacgttctccaggctctttacttgatt 211  Q
    ||||||||| ||||||||||||| ||||| ||||||| | ||||||||||||||| |||||||||||||||||| ||||||||||| || ||||  ||||    
T  28131974 ttgttcatagatatcaatcttaccgtgtttttctgtaga-catgaactatatcattgtgacaccataacctactgcgttctccaggttccttacacgatt 28132072  T
Q  212 cttgccgaacgatttctttacccatgtcctccaccaagtcatgtaatgtcacatcaac 269  Q
    |||   | ||||||||||||||  |||| || | ||||||||||||||||||||||||    
T  28132073 ctttatggacgatttctttacctgtgtcttctatcaagtcatgtaatgtcacatcaac 28132130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 147 - 264
Target Start/End: Complemental strand, 26137551 - 26137434
Alignment:
Q  147 taaaacatgaactatatcatcgtgacaccataacctactacgttctccaggctctttacttgattcttgccgaacgatttctttacccatgtcctccacc 246  Q
    |||||||||||||||||| || ||| |||| |||||||| |||| |||||| |||||   ||||||||| || || |||||||||||||| ||||| | |    
T  26137551 taaaacatgaactatatcttcatgaaaccacaacctactgcgttttccaggttctttgggtgattcttgtcggacaatttctttacccatatcctctatc 26137452  T
Q  247 aagtcatgtaatgtcaca 264  Q
    ||||||||||||| ||||    
T  26137451 aagtcatgtaatgccaca 26137434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 147 - 260
Target Start/End: Original strand, 5921988 - 5922101
Alignment:
Q  147 taaaacatgaactatatcatcgtgacaccataacctactacgttctccaggctctttacttgattcttgccgaacgatttctttacccatgtcctccacc 246  Q
    |||||| ||||||||||| ||  | |||||||||||||| || | ||||||||||||   ||||||||| | ||| |||||||| ||||||||||| | |    
T  5921988 taaaacttgaactatatcttcagggcaccataacctactgcgctttccaggctctttcggtgattcttgtctaacaatttcttttcccatgtcctctatc 5922087  T
Q  247 aagtcatgtaatgt 260  Q
    |  |||||||||||    
T  5922088 acatcatgtaatgt 5922101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 44
Target Start/End: Original strand, 28126048 - 28126089
Alignment:
Q  3 aatacaaataatatatagagaaatagatatgtaatgaagtgg 44  Q
    ||||||||||||||||||||||||| || |||||| ||||||    
T  28126048 aatacaaataatatatagagaaatatatgtgtaattaagtgg 28126089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 72; Significance: 1e-32; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 122 - 265
Target Start/End: Original strand, 17991688 - 17991831
Alignment:
Q  122 atatcaatcttacagtgttcttctgtaaaacatgaactatatcatcgtgacaccataacctactacgttctccaggctctttacttgattcttgccgaac 221  Q
    |||| |||||||| || || | |||||||||||||||||| ||||  | |||||| || ||||| ||||||||||||||||||  |||||||||||||||    
T  17991688 atatgaatcttactgtattttcctgtaaaacatgaactatgtcattataacaccacaatctactccgttctccaggctctttaggtgattcttgccgaac 17991787  T
Q  222 gatttctttacccatgtcctccaccaagtcatgtaatgtcacat 265  Q
    ||||||||||||||||||||| | ||||||||||| ||| ||||    
T  17991788 gatttctttacccatgtcctctatcaagtcatgtactgtaacat 17991831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 68; Significance: 2e-30; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 112 - 263
Target Start/End: Original strand, 18653960 - 18654111
Alignment:
Q  112 ttgttcataaatatcaatcttacagtgttcttctgtaaaacatgaactatatcatcgtgacaccataacctactacgttctccaggctctttacttgatt 211  Q
    ||||||||| |||||||||||||  |||| | |||||||| ||||||||| |||| | ||||||| ||||||||||| | | |||||| ||||  |||||    
T  18653960 ttgttcatagatatcaatcttactttgttttcctgtaaaatatgaactatgtcattgcgacaccacaacctactacgcttttcaggctgtttaggtgatt 18654059  T
Q  212 cttgccgaacgatttctttacccatgtcctccaccaagtcatgtaatgtcac 263  Q
    ||| ||| |||||||||||||||||| |||| | ||||||||||||||||||    
T  18654060 ctttccggacgatttctttacccatgacctctagcaagtcatgtaatgtcac 18654111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 112 - 263
Target Start/End: Original strand, 18678040 - 18678191
Alignment:
Q  112 ttgttcataaatatcaatcttacagtgttcttctgtaaaacatgaactatatcatcgtgacaccataacctactacgttctccaggctctttacttgatt 211  Q
    ||||||||| |||||||||||||  |||| | |||||||| ||||||||| |||| | ||||||| ||||||||||| | | ||||||||||   |||||    
T  18678040 ttgttcatagatatcaatcttactttgttttcctgtaaaatatgaactatgtcattgcgacaccacaacctactacgcttttcaggctctttgggtgatt 18678139  T
Q  212 cttgccgaacgatttctttacccatgtcctccaccaagtcatgtaatgtcac 263  Q
    ||| ||| |||||||||||||||||| |||| | ||||||||||||||||||    
T  18678140 ctttccggacgatttctttacccatgacctctagcaagtcatgtaatgtcac 18678191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 112 - 267
Target Start/End: Original strand, 18729978 - 18730133
Alignment:
Q  112 ttgttcataaatatcaatcttacagtgttcttctgtaaaacatgaactatatcatcgtgacaccataacctactacgttctccaggctctttacttgatt 211  Q
    ||||||||| |||||||||||||  |||| | |||||||| ||||| ||| |||||| ||||||| |||| |||||| | | ||||||||||   |||||    
T  18729978 ttgttcatagatatcaatcttactttgttttcctgtaaaatatgaattatgtcatcgcgacaccacaaccgactacgcttttcaggctctttgggtgatt 18730077  T
Q  212 cttgccgaacgatttctttacccatgtcctccaccaagtcatgtaatgtcacatca 267  Q
    ||| ||| |||||||||||||||||| |||| | ||||||||||||||||||||||    
T  18730078 ctttccggacgatttctttacccatgacctctagcaagtcatgtaatgtcacatca 18730133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 112 - 263
Target Start/End: Original strand, 18722553 - 18722704
Alignment:
Q  112 ttgttcataaatatcaatcttacagtgttcttctgtaaaacatgaactatatcatcgtgacaccataacctactacgttctccaggctctttacttgatt 211  Q
    ||||||||| |||||||||||||  |||| | | |||||| ||||||||| |||||  ||||||| |||| |||||||| | |||||||||||  |||||    
T  18722553 ttgttcatagatatcaatcttactttgttttccagtaaaatatgaactatgtcatcacgacaccacaaccgactacgtttttcaggctctttaggtgatt 18722652  T
Q  212 cttgccgaacgatttctttacccatgtcctccaccaagtcatgtaatgtcac 263  Q
    |||  |||| |||||||||||||||| |||| | ||||||||||||||||||    
T  18722653 ctttacgaatgatttctttacccatgacctctagcaagtcatgtaatgtcac 18722704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 112 - 263
Target Start/End: Original strand, 18697883 - 18698034
Alignment:
Q  112 ttgttcataaatatcaatcttacagtgttcttctgtaaaacatgaactatatcatcgtgacaccataacctactacgttctccaggctctttacttgatt 211  Q
    ||||||||| |||||||||||||  |||| | |||||||| ||||| ||| |||||| ||||||| || | |||||| | | ||||||||||   |||||    
T  18697883 ttgttcatagatatcaatcttactttgttttcctgtaaaatatgaattatgtcatcgcgacaccacaatcgactacgcttttcaggctctttgggtgatt 18697982  T
Q  212 cttgccgaacgatttctttacccatgtcctccaccaagtcatgtaatgtcac 263  Q
    ||| ||| |||||||||||||||||| |||| | ||||||||||||||||||    
T  18697983 ctttccggacgatttctttacccatggcctctagcaagtcatgtaatgtcac 18698034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 112 - 263
Target Start/End: Original strand, 18688097 - 18688248
Alignment:
Q  112 ttgttcataaatatcaatcttacagtgttcttctgtaaaacatgaactatatcatcgtgacaccataacctactacgttctccaggctctttacttgatt 211  Q
    ||||||||| |||||||||||||  |||| | ||||||||  |||| ||| ||| |  ||||||| |||| |||||| | | |||||||||||  |||||    
T  18688097 ttgttcatagatatcaatcttactttgttttcctgtaaaatttgaattatgtcaccacgacaccacaaccgactacgcttttcaggctctttaggtgatt 18688196  T
Q  212 cttgccgaacgatttctttacccatgtcctccaccaagtcatgtaatgtcac 263  Q
    ||| ||| || ||||||||||||||| |||| | ||||||||||||||||||    
T  18688197 ctttccggacaatttctttacccatgacctctagcaagtcatgtaatgtcac 18688248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 147 - 257
Target Start/End: Original strand, 2052 - 2162
Alignment:
Q  147 taaaacatgaactatatcatcgtgacaccataacctactacgttctccaggctctttacttgattcttgccgaacgatttctttacccatgtcctccacc 246  Q
    ||||||| ||||||||||||| ||||| ||||||||||| | |||||||||||||||| |||||||||| || |||| |||||||||||||||||| | |    
T  2052 taaaacacgaactatatcatcctgacagcataacctacttctttctccaggctctttaattgattcttgtcggacgacttctttacccatgtcctctatc 2151  T
Q  247 aagtcatgtaa 257  Q
    |||||||||||    
T  2152 aagtcatgtaa 2162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1870 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: scaffold1870
Description:

Target: scaffold1870; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 147 - 265
Target Start/End: Complemental strand, 450 - 332
Alignment:
Q  147 taaaacatgaactatatcatcgtgacaccataacctactacgttctccaggctctttacttgattcttgccgaacgatttctttacccatgtcctccacc 246  Q
    |||||||| |||||||||||| ||||||||||||||||| | |||||| |||||||||   |||||||| || |||| |||||||||||||||||| |      
T  450 taaaacattaactatatcatcttgacaccataacctacttctttctcctggctctttaggcgattcttgtcgtacgacttctttacccatgtcctctata 351  T
Q  247 aagtcatgtaatgtcacat 265  Q
    |||||||||||||||||||    
T  350 aagtcatgtaatgtcacat 332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0419 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: scaffold0419
Description:

Target: scaffold0419; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 147 - 265
Target Start/End: Complemental strand, 9168 - 9050
Alignment:
Q  147 taaaacatgaactatatcatcgtgacaccataacctactacgttctccaggctctttacttgattcttgccgaacgatttctttacccatgtcctccacc 246  Q
    |||||||| |||||||||||| ||||||||||||||||| | |||||| |||||||||   |||||||| || |||| |||||||||||||||||| |      
T  9168 taaaacattaactatatcatcttgacaccataacctacttctttctcctggctctttaggcgattcttgtcgtacgacttctttacccatgtcctctata 9069  T
Q  247 aagtcatgtaatgtcacat 265  Q
    |||||||||||||||||||    
T  9068 aagtcatgtaatgtcacat 9050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 50; Significance: 1e-19; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 147 - 240
Target Start/End: Original strand, 29272351 - 29272444
Alignment:
Q  147 taaaacatgaactatatcatcgtgacaccataacctactacgttctccaggctctttacttgattcttgccgaacgatttctttacccatgtcc 240  Q
    ||||||| |||||| |||||| || || ||||||||||| | |||||||||||||||| |||||||||| || |||| ||||||||||||||||    
T  29272351 taaaacacgaactagatcatcctggcagcataacctacttctttctccaggctctttaattgattcttgtcggacgacttctttacccatgtcc 29272444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 147 - 264
Target Start/End: Original strand, 16371647 - 16371764
Alignment:
Q  147 taaaacatgaactatatcatcgtgacaccataacctactacgttctccaggctctttacttgattcttgccgaacgatttctttacccatgtcctccacc 246  Q
    |||||| ||||||| ||||| |  | ||||||||||||||||||| || ||||| ||   ||||||||| || || ||||||||||||||||| || |||    
T  16371647 taaaacttgaactacatcattgacaaaccataacctactacgttcgcctggctcctttggtgattcttgtcggacaatttctttacccatgtcttctacc 16371746  T
Q  247 aagtcatgtaatgtcaca 264  Q
    | || |||||||||||||    
T  16371747 aggttatgtaatgtcaca 16371764  T

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Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 173 - 265
Target Start/End: Complemental strand, 12590378 - 12590286
Alignment:
Q  173 accataacctactacgttctccaggctctttacttgattcttgccgaacgatttctttacccatgtcctccaccaagtcatgtaatgtcacat 265  Q
    |||||||||||||||||| |||||| | ||    ||||||||| | ||| |||||||| ||||| ||||| ||||| ||||||||||||||||    
T  12590378 accataacctactacgttttccaggattttccggtgattcttgtctaactatttctttccccatatcctctaccaaatcatgtaatgtcacat 12590286  T

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Target: scaffold0277 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: scaffold0277
Description:

Target: scaffold0277; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 147 - 262
Target Start/End: Original strand, 3216 - 3331
Alignment:
Q  147 taaaacatgaactatatcatcgtgacaccataacctactacgttctccaggctctttacttgattcttgccgaacgatttctttacccatgtcctccacc 246  Q
    |||||||| |||||||||||| | ||||||||| ||||| | |||||||||||||||    |||||||| || |||| |||||||||||||||||  | |    
T  3216 taaaacattaactatatcatcttcacaccataatctacttctttctccaggctctttgggcgattcttgtcggacgacttctttacccatgtcctttatc 3315  T
Q  247 aagtcatgtaatgtca 262  Q
    |||||||||| |||||    
T  3316 aagtcatgtagtgtca 3331  T

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Target: scaffold0277; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 147 - 262
Target Start/End: Original strand, 12179 - 12294
Alignment:
Q  147 taaaacatgaactatatcatcgtgacaccataacctactacgttctccaggctctttacttgattcttgccgaacgatttctttacccatgtcctccacc 246  Q
    |||||||| |||||||||||| | ||||||||| ||||| | |||||||||||||||    |||||||| || |||| |||||||||||||||||  | |    
T  12179 taaaacattaactatatcatcttcacaccataatctacttctttctccaggctctttgggcgattcttgtcggacgacttctttacccatgtcctttatc 12278  T
Q  247 aagtcatgtaatgtca 262  Q
    |||||||||| |||||    
T  12279 aagtcatgtagtgtca 12294  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 207 - 265
Target Start/End: Complemental strand, 615399 - 615341
Alignment:
Q  207 tgattcttgccgaacgatttctttacccatgtcctccaccaagtcatgtaatgtcacat 265  Q
    ||||||||| | ||| |||||||| ||||| ||||| ||||| ||||||||||||||||    
T  615399 tgattcttgtctaacaatttctttccccatatcctctaccaaatcatgtaatgtcacat 615341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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