View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2693_low_5 (Length: 251)

Name: NF2693_low_5
Description: NF2693
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2693_low_5
NF2693_low_5
[»] chr6 (12 HSPs)
chr6 (45-201)||(3676348-3676505)
chr6 (45-203)||(2438800-2438957)
chr6 (56-168)||(2537063-2537176)
chr6 (16-109)||(3676767-3676860)
chr6 (74-167)||(16316644-16316738)
chr6 (203-251)||(3676227-3676275)
chr6 (45-168)||(10927873-10927996)
chr6 (45-168)||(27901204-27901327)
chr6 (96-168)||(32249936-32250009)
chr6 (133-181)||(17589942-17589990)
chr6 (122-168)||(23915527-23915573)
chr6 (139-203)||(17590000-17590064)
[»] chr5 (4 HSPs)
chr5 (45-203)||(28221980-28222138)
chr5 (56-168)||(28263779-28263892)
chr5 (103-198)||(3160861-3160957)
chr5 (101-168)||(1190405-1190473)
[»] chr4 (14 HSPs)
chr4 (46-186)||(11974663-11974804)
chr4 (45-171)||(3729487-3729614)
chr4 (45-168)||(9162575-9162699)
chr4 (47-168)||(44814515-44814637)
chr4 (47-168)||(54198246-54198366)
chr4 (45-172)||(38001450-38001577)
chr4 (56-173)||(12216960-12217078)
chr4 (45-168)||(5525028-5525150)
chr4 (139-200)||(33728878-33728939)
chr4 (56-168)||(44673229-44673341)
chr4 (45-167)||(10726370-10726493)
chr4 (45-167)||(10940139-10940262)
chr4 (139-198)||(11974809-11974868)
chr4 (171-203)||(9162916-9162948)
[»] chr1 (9 HSPs)
chr1 (45-172)||(14494794-14494920)
chr1 (46-168)||(29699129-29699252)
chr1 (56-168)||(237180-237291)
chr1 (45-165)||(14245889-14246010)
chr1 (45-168)||(9041227-9041351)
chr1 (72-159)||(20133014-20133102)
chr1 (45-153)||(43575154-43575262)
chr1 (101-168)||(50231535-50231603)
chr1 (105-168)||(8528223-8528287)
[»] scaffold0066 (1 HSPs)
scaffold0066 (45-168)||(56469-56593)
[»] chr2 (11 HSPs)
chr2 (45-172)||(7061863-7061990)
chr2 (45-169)||(43528443-43528566)
chr2 (56-168)||(309852-309965)
chr2 (56-199)||(44972992-44973130)
chr2 (62-167)||(13594520-13594626)
chr2 (46-131)||(2222108-2222193)
chr2 (96-172)||(35193434-35193511)
chr2 (45-168)||(44539474-44539598)
chr2 (45-113)||(25047896-25047963)
chr2 (56-121)||(35193373-35193439)
chr2 (45-153)||(27339513-27339622)
[»] scaffold0025 (1 HSPs)
scaffold0025 (46-167)||(3441-3562)
[»] chr8 (3 HSPs)
chr8 (56-172)||(5592652-5592769)
chr8 (45-168)||(24432237-24432361)
chr8 (171-203)||(32889073-32889105)
[»] chr3 (14 HSPs)
chr3 (56-172)||(22833295-22833412)
chr3 (45-168)||(44822225-44822349)
chr3 (121-200)||(22176455-22176534)
chr3 (122-200)||(22101510-22101588)
chr3 (45-166)||(22101935-22102057)
chr3 (45-168)||(28096294-28096418)
chr3 (45-168)||(35369082-35369205)
chr3 (45-172)||(3422576-3422703)
chr3 (45-166)||(22176882-22177004)
chr3 (56-172)||(7116525-7116639)
chr3 (45-167)||(34492078-34492200)
chr3 (45-168)||(35863628-35863750)
chr3 (45-168)||(53359495-53359620)
chr3 (72-167)||(7115944-7116040)
[»] scaffold0123 (1 HSPs)
scaffold0123 (45-168)||(17180-17304)
[»] chr7 (12 HSPs)
chr7 (45-206)||(9329658-9329818)
chr7 (56-168)||(20621211-20621324)
chr7 (45-168)||(35492182-35492305)
chr7 (45-165)||(9306648-9306768)
chr7 (45-165)||(9302210-9302330)
chr7 (45-168)||(41755381-41755505)
chr7 (45-159)||(9307675-9307787)
chr7 (73-168)||(11321252-11321347)
chr7 (45-119)||(47912185-47912259)
chr7 (61-165)||(47221007-47221112)
chr7 (45-122)||(9303237-9303312)
chr7 (47-150)||(39677858-39677963)
[»] scaffold0990 (1 HSPs)
scaffold0990 (56-122)||(1010-1075)


Alignment Details
Target: chr6 (Bit Score: 138; Significance: 3e-72; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 45 - 201
Target Start/End: Complemental strand, 3676505 - 3676348
Alignment:
Q  45 gtaacatgaaattttgttttgtgataattttttgtgagtttgatctttggataacagaggtaaaagagggttaac-gggacgattagtgatatggattat 143  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||     
T  3676505 gtaacatgaaattttgttttgtgatagttttttgtgagtttgatctttggataacagaggtaaaagagggttaacagggacgattagtgatatggattac 3676406  T
Q  144 taatccacgtgttattgtataattgactatttgtatttaaaattaacggtatttttgg 201  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  3676405 taatccacgtgttattgtataattgactatttgtatttaaaattaagggtatttttgg 3676348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 45 - 203
Target Start/End: Original strand, 2438800 - 2438957
Alignment:
Q  45 gtaacatgaaattttgttttgtgataattttttgtgagtttgatctttggataacagaggtaaaagagggttaacggg-acgattagtgatatggattat 143  Q
    ||||||||||||||||||||||| || |||||||  |||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| ||||     
T  2438800 gtaacatgaaattttgttttgtgttagttttttg--agtttgatctttggataacagaggtaaaagagggttaacggggacgattagtgacatgaattac 2438897  T
Q  144 taatccacgtgttattgtataattgactatttgtatttaaaattaacggtatttttggaa 203  Q
    |||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||    
T  2438898 taatccacgtgttattttataattgactatttgtatttaaaattaagggtatttttggaa 2438957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 56 - 168
Target Start/End: Complemental strand, 2537176 - 2537063
Alignment:
Q  56 ttttgttttgtgataattttttgtgagtttgatctttggataacagaggtaaaagagggttaac-gggacgattagtgatatggattattaatccacgtg 154  Q
    |||||||||||| || ||||||||||||||||||| ||| |||| ||||||||| ||||||||| |||||||||||||| |||||||| ||| |||||||    
T  2537176 ttttgttttgtgctagttttttgtgagtttgatctgtggttaacggaggtaaaatagggttaacggggacgattagtgacatggattagtaacccacgtg 2537077  T
Q  155 ttattgtataattg 168  Q
    ||||| ||||||||    
T  2537076 ttattttataattg 2537063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 16 - 109
Target Start/End: Complemental strand, 3676860 - 3676767
Alignment:
Q  16 atgtacaacgtaaaagcggttgnnnnnnngtaacatgaaattttgttttgtgataattttttgtgagtttgatctttggataacagaggtaaaa 109  Q
    ||||||||||||||||| ||||       |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  3676860 atgtacaacgtaaaagcagttgaaaaaaagtaacatgaaattttgttttgtgatagttttttgtgagtttgatctttggataacagaggtaaaa 3676767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 74 - 167
Target Start/End: Original strand, 16316644 - 16316738
Alignment:
Q  74 ttttgtgagtttgatctttggataacagaggtaaaagagggttaacgg-gacgattagtgatatggattattaatccacgtgttattgtataatt 167  Q
    ||||||||||||||||| ||| ||||| |||||||||||||||||||| |||||||||||| |||||||| |||||||||||||||| |||||||    
T  16316644 ttttgtgagtttgatctatggttaacataggtaaaagagggttaacggagacgattagtgacatggattagtaatccacgtgttattttataatt 16316738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 203 - 251
Target Start/End: Complemental strand, 3676275 - 3676227
Alignment:
Q  203 agaatcacatcttttagaagctaaccttttccatttaggctagtactat 251  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  3676275 agaatcacatcttttagaagctaaccttttccatttaggctagtactat 3676227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 45 - 168
Target Start/End: Complemental strand, 10927996 - 10927873
Alignment:
Q  45 gtaacatgaaattttgttttgtgataattttttgtgagtttgatctttggataacagaggtaaaagagggttaacg-ggacgattagtgatatggattat 143  Q
    |||||||||  |||||||||||| || |||||| | || ||||| | ||| || | |||||||||||||||||||| ||||||||| ||| ||||||||     
T  10927996 gtaacatgagtttttgttttgtgttattttttttttagattgatatgtggtta-cggaggtaaaagagggttaacgaggacgattattgacatggattag 10927898  T
Q  144 taatccacgtgttattgtataattg 168  Q
    |||||||||||||||| ||||||||    
T  10927897 taatccacgtgttattttataattg 10927873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 45 - 168
Target Start/End: Original strand, 27901204 - 27901327
Alignment:
Q  45 gtaacatgaaattttgttttgtgataattttttgtgagtttgatctttggataacagaggtaaaagagggttaac-gggacgattagtgatatggattat 143  Q
    |||||||||  ||||| |||||| || ||||||||| | ||||||| ||| || || |||||||||||||||||| |||||||| ||| | ||||||||     
T  27901204 gtaacatgagtttttgctttgtgctagttttttgtgtgattgatctgtggtta-cataggtaaaagagggttaacggggacgatcagtaacatggattag 27901302  T
Q  144 taatccacgtgttattgtataattg 168  Q
    ||||||| |||||||| ||||||||    
T  27901303 taatccatgtgttattttataattg 27901327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 96 - 168
Target Start/End: Original strand, 32249936 - 32250009
Alignment:
Q  96 taacagaggtaaaagagggttaacgg-gacgattagtgatatggattattaatccacgtgttattgtataattg 168  Q
    |||||||||||||||| ||||||| | |||||||||||| |||||||| ||||| |||||||||| ||||||||    
T  32249936 taacagaggtaaaagatggttaacagagacgattagtgacatggattagtaatctacgtgttattttataattg 32250009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 133 - 181
Target Start/End: Original strand, 17589942 - 17589990
Alignment:
Q  133 atatggattattaatccacgtgttattgtataattgactatttgtattt 181  Q
    |||||||||| |||||||||||||| | |||||||| ||||||||||||    
T  17589942 atatggattactaatccacgtgttaatttataattggctatttgtattt 17589990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 122 - 168
Target Start/End: Original strand, 23915527 - 23915573
Alignment:
Q  122 gacgattagtgatatggattattaatccacgtgttattgtataattg 168  Q
    |||||||||||| || ||||| |||||||||||||||| ||||||||    
T  23915527 gacgattagtgacatagattagtaatccacgtgttattttataattg 23915573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 203
Target Start/End: Original strand, 17590000 - 17590064
Alignment:
Q  139 attattaatccacgtgttattgtataattgactatttgtatttaaaattaacggtatttttggaa 203  Q
    |||| |||||||||||||||| | ||||    |||||||| |||||||||| |||||||||||||    
T  17590000 attactaatccacgtgttattttgtaatgagttatttgtaattaaaattaatggtatttttggaa 17590064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 95; Significance: 1e-46; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 45 - 203
Target Start/End: Complemental strand, 28222138 - 28221980
Alignment:
Q  45 gtaacatgaaattttgttttgtgataattttttgtgagtttgatctttggataacagaggtaaaagagggttaacgggacgattagtgatatggattatt 144  Q
    |||||||||  |||||||||||| || ||||||||||||||||||||||| ||||  |||||||||||||||||| | ||  ||||||| |||||||| |    
T  28222138 gtaacatgagtttttgttttgtgctagttttttgtgagtttgatctttggttaacgaaggtaaaagagggttaacagtacagttagtgacatggattact 28222039  T
Q  145 aatccacgtgttattgtataattgactatttgtatttaaaattaacggtatttttggaa 203  Q
    ||||||| ||||||| ||||||||||||||||||||||||||||| |||||||||||||    
T  28222038 aatccacatgttattttataattgactatttgtatttaaaattaagggtatttttggaa 28221980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 56 - 168
Target Start/End: Original strand, 28263779 - 28263892
Alignment:
Q  56 ttttgttttgtgataattttttgtgagtttgatctttggataacagaggtaaaagagggttaac-gggacgattagtgatatggattattaatccacgtg 154  Q
    |||||||||||| || ||||||||||||||||| | ||| ||||||||||||||||| |||||| |||||||||||||| ||| |||| |||||||||||    
T  28263779 ttttgttttgtgctagttttttgtgagtttgatatgtggttaacagaggtaaaagagagttaacggggacgattagtgacatgaattagtaatccacgtg 28263878  T
Q  155 ttattgtataattg 168  Q
    ||||| ||||||||    
T  28263879 ttattttataattg 28263892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 103 - 198
Target Start/End: Original strand, 3160861 - 3160957
Alignment:
Q  103 ggtaaaagagggttaacgggac-gattagtgatatggattattaatccacgtgttattgtataattgactatttgtatttaaaattaacggtatttt 198  Q
    |||||||||||||||||||  | |||||||||||||||||| |||| ||| ||||||| ||||||||| || ||||||| |||||||| ||||||||    
T  3160861 ggtaaaagagggttaacggagctgattagtgatatggattactaattcacatgttattttataattgattaattgtattcaaaattaagggtatttt 3160957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 101 - 168
Target Start/End: Complemental strand, 1190473 - 1190405
Alignment:
Q  101 gaggtaaaagagggttaac-gggacgattagtgatatggattattaatccacgtgttattgtataattg 168  Q
    ||||||||||||||||||| |||||||||  ||| |||||||| |||| || |||||||| ||||||||    
T  1190473 gaggtaaaagagggttaacggggacgattgttgacatggattagtaattcatgtgttattttataattg 1190405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 78; Significance: 2e-36; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 46 - 186
Target Start/End: Original strand, 11974663 - 11974804
Alignment:
Q  46 taacatgaaattttgttttgtgataattttttgtgagtttgatctttggataacagaggtaaaagagggttaacgg-gacgattagtgatatggattatt 144  Q
    ||||||||  |||||||||||| || ||||||||||||||||||||||| |||| |||||||||||| |||||||| |||||||||||  ||| |||| |    
T  11974663 taacatgagtttttgttttgtgctagttttttgtgagtttgatctttggttaacggaggtaaaagagagttaacggagacgattagtggcatgaattact 11974762  T
Q  145 aatccacgtgttattgtataattgactatttgtatttaaaat 186  Q
    |||||| |||||||| |||||||| |||||||||||||||||    
T  11974763 aatccatgtgttattttataattggctatttgtatttaaaat 11974804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 45 - 171
Target Start/End: Complemental strand, 3729614 - 3729487
Alignment:
Q  45 gtaacatgaaattttgttttgtgataattttttgtgagtttgatctttggataacagaggtaaaagagggttaac-gggacgattagtgatatggattat 143  Q
    |||||||||  |||||||||||| || ||||||||||||||||||| ||| |||| |||||||||||||||||||  ||||||||||||| ||| ||||     
T  3729614 gtaacatgagtttttgttttgtgctagttttttgtgagtttgatctatggttaacggaggtaaaagagggttaacatggacgattagtgacatgtattag 3729515  T
Q  144 taatccacgtgttattgtataattgact 171  Q
    |||||||| ||||||| |||||||||||    
T  3729514 taatccacatgttattttataattgact 3729487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 45 - 168
Target Start/End: Original strand, 9162575 - 9162699
Alignment:
Q  45 gtaacatgaaattttgttttgtgataattttttgtgagtttgatctttggataacagaggtaaaagagggttaacg-ggacgattagtgatatggattat 143  Q
    |||||||||  |||||||||||| || ||||||||||||||||| | ||| |||| || ||||||||||||||||| ||| ||||| ||| |||||||||    
T  9162575 gtaacatgagtttttgttttgtgctagttttttgtgagtttgatttgtggttaacggatgtaaaagagggttaacgtggaagattaatgacatggattat 9162674  T
Q  144 taatccacgtgttattgtataattg 168  Q
    |||||||||||||||| ||||||||    
T  9162675 taatccacgtgttattttataattg 9162699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 47 - 168
Target Start/End: Complemental strand, 44814637 - 44814515
Alignment:
Q  47 aacatgaaattttgttttgtgataattttttgtgagtttgatctttggataacagaggtaaaagagggttaac-gggacgattagtgatatggattatta 145  Q
    |||||||  |||||||||||| || ||||||||||||||||||| ||| |||| ||||||||||||||||||| ||||| |||||||| || ||||| ||    
T  44814637 aacatgagtttttgttttgtgctagttttttgtgagtttgatctatggttaacggaggtaaaagagggttaacggggacaattagtgacatagattagta 44814538  T
Q  146 atccacgtgttattgtataattg 168  Q
    ||| |||||||||| ||||||||    
T  44814537 atctacgtgttattttataattg 44814515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 47 - 168
Target Start/End: Original strand, 54198246 - 54198366
Alignment:
Q  47 aacatgaaattttgttttgtgataattttttgtgagtttgatctttggataacagaggtaaaagagggttaacgggacgattagtgatatggattattaa 146  Q
    |||||||  |||||||||||| || ||||||||||||||||| | | | || | ||||||||||||||||||||||| ||||||||| |||||||| |||    
T  54198246 aacatgagtttttgttttgtgctagttttttgtgagtttgatatgttgtta-cggaggtaaaagagggttaacgggatgattagtgacatggattagtaa 54198344  T
Q  147 tccacgtgttattgtataattg 168  Q
    ||||||||||||| ||||||||    
T  54198345 tccacgtgttattttataattg 54198366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 45 - 172
Target Start/End: Complemental strand, 38001577 - 38001450
Alignment:
Q  45 gtaacatgaaattttgttttgtgataattttttgtgagtttgatctttggataacagaggtaaaagagggttaacggg-acgattagtgatatggattat 143  Q
    |||| ||||| ||||||| | || || ||||||||||||||||||| ||| || ||||||||||| |||||||||||| | ||||||||| ||||||||     
T  38001577 gtaatatgaatttttgttctatgctagttttttgtgagtttgatctgtggtta-cagaggtaaaatagggttaacggggatgattagtgacatggattag 38001479  T
Q  144 taatccacgtgttattgtataattgacta 172  Q
    ||||||| |||||||| ||||||||||||    
T  38001478 taatccatgtgttattttataattgacta 38001450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 56 - 173
Target Start/End: Complemental strand, 12217078 - 12216960
Alignment:
Q  56 ttttgttttgtgataattttttgtgagtttgatctttggataacagaggtaaaagagggttaac-gggacgattagtgatatggattattaatccacgtg 154  Q
    |||||||||||| |||||||||||||||||||| | ||| ||||| ||||||||||||||||||  | || |||| ||| |||||||| |||||||| ||    
T  12217078 ttttgttttgtgctaattttttgtgagtttgatttgtggttaacataggtaaaagagggttaacaagaacaattactgacatggattagtaatccacatg 12216979  T
Q  155 ttattgtataattgactat 173  Q
    ||||| |||||||| ||||    
T  12216978 ttattttataattggctat 12216960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 45 - 168
Target Start/End: Complemental strand, 5525150 - 5525028
Alignment:
Q  45 gtaacatgaaattttgttttgtgataattttttgtgagtttgatctttggataacagaggtaaaagagggttaac-gggacgattagtgatatggattat 143  Q
    |||||||||  |||||||||||| || ||||||||||||||||| | ||| |||| |||||||||||| |||||| |||||||  ||||| ||||||||     
T  5525150 gtaacatgagtttttgttttgtgctagttttttgtgagtttgatttgtggttaacggaggtaaaagagagttaacggggacga--agtgacatggattag 5525053  T
Q  144 taatccacgtgttattgtataattg 168  Q
    ||||| || ||||||| ||||||||    
T  5525052 taatctacttgttattttataattg 5525028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 139 - 200
Target Start/End: Complemental strand, 33728939 - 33728878
Alignment:
Q  139 attattaatccacgtgttattgtataattgactatttgtatttaaaattaacggtatttttg 200  Q
    |||||||||  |||||||||| ||||||||||||||||||||||||||||| | ||||||||    
T  33728939 attattaatttacgtgttattttataattgactatttgtatttaaaattaaggatatttttg 33728878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 56 - 168
Target Start/End: Original strand, 44673229 - 44673341
Alignment:
Q  56 ttttgttttgtgataattttttgtgagtttgatctttggataacagaggtaaaagagggttaacggg-acgattagtgatatggattattaatccacgtg 154  Q
    ||||||||||||  | ||||||||||||||||||| ||| | || |||||||||||||||||||||| || ||||||||  || |||| |||| ||||||    
T  44673229 ttttgttttgtgccacttttttgtgagtttgatctgtgg-ttacggaggtaaaagagggttaacgggaacaattagtgacgtgaattagtaattcacgtg 44673327  T
Q  155 ttattgtataattg 168  Q
    ||||  ||||||||    
T  44673328 ttatcttataattg 44673341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 45 - 167
Target Start/End: Complemental strand, 10726493 - 10726370
Alignment:
Q  45 gtaacatgaaattttgttttgtgataattttttgtgagtttgatctttggataacagaggtaaaagagggttaa-cgggacgattagtgatatggattat 143  Q
    |||||||||  |||| ||||||| || ||||||||||||||||| | ||| ||||| | | |||||||||||||  |||||||||  ||| || |||||     
T  10726493 gtaacatgagtttttattttgtgctagttttttgtgagtttgatatgtggttaacaaaagcaaaagagggttaatggggacgatttatgacatagattag 10726394  T
Q  144 taatccacgtgttattgtataatt 167  Q
    |||||||| ||||||| |||||||    
T  10726393 taatccacatgttattctataatt 10726370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 45 - 167
Target Start/End: Complemental strand, 10940262 - 10940139
Alignment:
Q  45 gtaacatgaaattttgttttgtgataattttttgtgagtttgatctttggataacagaggtaaaagagggttaa-cgggacgattagtgatatggattat 143  Q
    |||||||||  |||| ||||||| || ||||||||||||||||| | ||| ||||| | | |||||||||||||  |||||||||  ||| || |||||     
T  10940262 gtaacatgagtttttattttgtgctagttttttgtgagtttgatatgtggttaacaaaagcaaaagagggttaatggggacgatttatgacatagattag 10940163  T
Q  144 taatccacgtgttattgtataatt 167  Q
    |||||||| ||||||| |||||||    
T  10940162 taatccacatgttattctataatt 10940139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 139 - 198
Target Start/End: Original strand, 11974809 - 11974868
Alignment:
Q  139 attattaatccacgtgttattgtataattgactatttgtatttaaaattaacggtatttt 198  Q
    |||| |||||||||||||||| | |||||| ||||||||| |||||||||| ||||||||    
T  11974809 attactaatccacgtgttattttgtaattggctatttgtaattaaaattaagggtatttt 11974868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 203
Target Start/End: Original strand, 9162916 - 9162948
Alignment:
Q  171 tatttgtatttaaaattaacggtatttttggaa 203  Q
    ||||||||||||||||||| |||||||||||||    
T  9162916 tatttgtatttaaaattaagggtatttttggaa 9162948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 74; Significance: 5e-34; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 45 - 172
Target Start/End: Complemental strand, 14494920 - 14494794
Alignment:
Q  45 gtaacatgaaattttgttttgtgataattttttgtgagtttgatctttggataacagaggtaaaagagggttaacgg-gacgattagtgatatggattat 143  Q
    |||||||| | |||||||||||| || ||||||||||||||||| |  || |||||||||||||||||||||||||| |||||||||||| ||||||||     
T  14494920 gtaacatggatttttgttttgtgctagttttttgtgagtttgatgt--ggttaacagaggtaaaagagggttaacggagacgattagtgacatggattag 14494823  T
Q  144 taatccacgtgttattgtataattgacta 172  Q
    |||||||||||||||| ||||||||||||    
T  14494822 taatccacgtgttattttataattgacta 14494794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 46 - 168
Target Start/End: Original strand, 29699129 - 29699252
Alignment:
Q  46 taacatgaaattttgttttgtgataattttttgtgagtttgatctttggataacagaggtaaaagagggttaac-gggacgattagtgatatggattatt 144  Q
    ||||||||  |||||||||||| || |||| |||||||||||| | ||| |||| || |||||||| ||||||| |||||||| ||||| |||||||| |    
T  29699129 taacatgagtttttgttttgtgctagttttatgtgagtttgatttgtggttaacggaagtaaaagatggttaacggggacgatcagtgacatggattagt 29699228  T
Q  145 aatccacgtgttattgtataattg 168  Q
    ||||||||||||||| ||||||||    
T  29699229 aatccacgtgttattttataattg 29699252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 56 - 168
Target Start/End: Complemental strand, 237291 - 237180
Alignment:
Q  56 ttttgttttgtgataattttttgtgagtttgatctttggataacagaggtaaaagagggttaacgg-gacgattagtgatatggattattaatccacgtg 154  Q
    |||||||||||| || |||||||||| |||||||| ||| |||| |||||||||||||||||| || |||||||||||| |||||||| |||| ||||||    
T  237291 ttttgttttgtgctagttttttgtga-tttgatctatggttaacggaggtaaaagagggttaaaggagacgattagtgacatggattagtaat-cacgtg 237194  T
Q  155 ttattgtataattg 168  Q
    ||||| ||||||||    
T  237193 ttattttataattg 237180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 45 - 165
Target Start/End: Complemental strand, 14246010 - 14245889
Alignment:
Q  45 gtaacatgaaattttgttttgtgataattttttgtgagtttgatctttggataacagaggtaaaagagggttaac-gggacgattagtgatatggattat 143  Q
    |||||||||  |||||||||||| |||||||||||||||||||| | ||  ||||||| |||||||| ||||||| |||||||||||||| || ||| |     
T  14246010 gtaacatgagtttttgttttgtgctaattttttgtgagtttgatatgtgattaacagatgtaaaagaaggttaactgggacgattagtgacatcgataag 14245911  T
Q  144 taatccacgtgttattgtataa 165  Q
    ||||| | |||||||| |||||    
T  14245910 taatctatgtgttattttataa 14245889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 45 - 168
Target Start/End: Complemental strand, 9041351 - 9041227
Alignment:
Q  45 gtaacatgaaattttgttttgtgataattttttgtgagtttgatctttggataacagaggtaaaagagggttaacgg-gacgattagtgatatggattat 143  Q
    |||||||||  ||||||||| || || ||||||||||||||||||| ||  |||| |||||||||||||||||||||  ||||||| ||| ||||||||     
T  9041351 gtaacatgagtttttgttttatgctagttttttgtgagtttgatctatgattaacggaggtaaaagagggttaacggaaacgattaatgacatggattag 9041252  T
Q  144 taatccacgtgttattgtataattg 168  Q
     ||| ||||| ||||| ||||||||    
T  9041251 caattcacgtattattttataattg 9041227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 72 - 159
Target Start/End: Original strand, 20133014 - 20133102
Alignment:
Q  72 ttttttgtgagtttgatctttggataacagaggtaaaagagggttaacg-ggacgattagtgatatggattattaatccacgtgttatt 159  Q
    |||||||||||| |||| | ||| |||| |||||||||||||||||||| |||||||| |||| |||||||| ||||| ||||||||||    
T  20133014 ttttttgtgagtctgatatgtggttaacggaggtaaaagagggttaacgaggacgattggtgacatggattagtaatctacgtgttatt 20133102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 45 - 153
Target Start/End: Original strand, 43575154 - 43575262
Alignment:
Q  45 gtaacatgaaattttgttttgtgataattttttgtgagtttgatctttggataacagaggtaaaagagggttaa-cgggacgattagtgatatggattat 143  Q
    |||||||||  |||||||||||| || |||||||| |||||||| | ||| | ||| |||||||||||||||||  |||||||||| ||| ||||||||     
T  43575154 gtaacatgagtttttgttttgtgttagttttttgtaagtttgatatgtgg-ttacataggtaaaagagggttaatggggacgattactgacatggattag 43575252  T
Q  144 taatccacgt 153  Q
    ||||||||||    
T  43575253 taatccacgt 43575262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 101 - 168
Target Start/End: Complemental strand, 50231603 - 50231535
Alignment:
Q  101 gaggtaaaagagggttaacggga-cgattagtgatatggattattaatccacgtgttattgtataattg 168  Q
    |||| |||||||||||||||||| |||||| ||| |||||||| |||||||||||||||| ||||||||    
T  50231603 gaggaaaaagagggttaacgggaacgattattgacatggattagtaatccacgtgttattttataattg 50231535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 105 - 168
Target Start/End: Complemental strand, 8528287 - 8528223
Alignment:
Q  105 taaaagagggttaac-gggacgattagtgatatggattattaatccacgtgttattgtataattg 168  Q
    ||||||||||||||| |||||||| | ||| |||||||| |||||||||||||||| ||||||||    
T  8528287 taaaagagggttaacagggacgatcattgacatggattagtaatccacgtgttattttataattg 8528223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0066 (Bit Score: 69; Significance: 5e-31; HSPs: 1)
Name: scaffold0066
Description:

Target: scaffold0066; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 45 - 168
Target Start/End: Complemental strand, 56593 - 56469
Alignment:
Q  45 gtaacatgaaattttgttttgtgataattttttgtgagtttgatctttggataacagaggtaaaagagggttaacgg-gacgattagtgatatggattat 143  Q
    |||||||||  |||||||||||| || ||||||||||||||||| | ||| ||||| |||||||||||||||||||| |||| ||||||| ||||||||     
T  56593 gtaacatgattttttgttttgtgctagttttttgtgagtttgatatgtggttaacaaaggtaaaagagggttaacggagacgtttagtgacatggattaa 56494  T
Q  144 taatccacgtgttattgtataattg 168  Q
    |||||||||||||||| ||||||||    
T  56493 taatccacgtgttattttataattg 56469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 69; Significance: 5e-31; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 45 - 172
Target Start/End: Complemental strand, 7061990 - 7061863
Alignment:
Q  45 gtaacatgaaattttgttttgtgataattttttgtgagtttgatctttggataacagaggtaaaagagggttaacg-ggacgattagtgatatggattat 143  Q
    |||||||||  |||||||||||| || ||||||||||||||||| | |||||||| ||||||||||| |||||||| ||||||||||||||||| ||||     
T  7061990 gtaacatgagtttttgttttgtgctagttttttgtgagtttgatatgtggataacggaggtaaaaga-ggttaacgaggacgattagtgatatgaattag 7061892  T
Q  144 taatccacgtgttattgtataattgacta 172  Q
    ||||||| |||||||| ||||||||||||    
T  7061891 taatccatgtgttattttataattgacta 7061863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 45 - 169
Target Start/End: Complemental strand, 43528566 - 43528443
Alignment:
Q  45 gtaacatgaaattttgttttgtgataattttttgtgagtttgatctttggataacagaggtaaaagagggttaacgg-gacgattagtgatatggattat 143  Q
    |||||||||| |||||||||||| || |||||||  |||||||| | ||| |||| ||||||||||||||||||||| |||||||||||| ||||||||     
T  43528566 gtaacatgaatttttgttttgtgctagttttttg--agtttgatatgtggttaacggaggtaaaagagggttaacggagacgattagtgacatggattag 43528469  T
Q  144 taatccacgtgttattgtataattga 169  Q
    |||| ||| ||||||| |||||||||    
T  43528468 taattcacatgttattttataattga 43528443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 56 - 168
Target Start/End: Complemental strand, 309965 - 309852
Alignment:
Q  56 ttttgttttgtgataattttttgtgagtttgatctttggataacagaggtaaaagagggttaac-gggacgattagtgatatggattattaatccacgtg 154  Q
    |||||||||||| || ||||||||||||||||||| ||  |||| ||||||||||| | ||||| |||||||||||||| |||||||| |||||||| ||    
T  309965 ttttgttttgtgctatttttttgtgagtttgatctatgcttaacggaggtaaaagaagtttaacggggacgattagtgacatggattagtaatccacatg 309866  T
Q  155 ttattgtataattg 168  Q
    ||||| ||||||||    
T  309865 ttattttataattg 309852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 56 - 199
Target Start/End: Original strand, 44972992 - 44973130
Alignment:
Q  56 ttttgttttgtgataattttttgtgagtttgatctttggataacagaggtaaaagagggttaacggg-acgattagtgatatggattattaatccacgtg 154  Q
    ||||||| |||| || |||||||||| |||||||||||| |||  ||||||||| |||||||||||| |  |||||||| |||||||| ||||      |    
T  44972992 ttttgttgtgtgctagttttttgtgaatttgatctttggttaatggaggtaaaaaagggttaacggggaaaattagtgagatggattactaat------g 44973085  T
Q  155 ttattgtataattgactatttgtatttaaaattaacggtattttt 199  Q
    ||||| ||||||||||||||||||||||||||||| |||||||||    
T  44973086 ttattttataattgactatttgtatttaaaattaagggtattttt 44973130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 62 - 167
Target Start/End: Complemental strand, 13594626 - 13594520
Alignment:
Q  62 tttgtgataattttttgtgagtttgatctttggataacagaggtaaaagagggttaacgg-gacgattagtgatatggattattaatccacgtgttattg 160  Q
    |||||| |||||||||||||||||||||| ||  |||| |||||||||||||||||| || |||||||||| | |||||||| |||||||| |||||||     
T  13594626 tttgtgctaattttttgtgagtttgatctatgattaacggaggtaaaagagggttaatggagacgattagttacatggattagtaatccacatgttattt 13594527  T
Q  161 tataatt 167  Q
    |||||||    
T  13594526 tataatt 13594520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 46 - 131
Target Start/End: Complemental strand, 2222193 - 2222108
Alignment:
Q  46 taacatgaaattttgttttgtgataattttttgtgagtttgatctttggataacagaggtaaaagagggttaacgggacgattagt 131  Q
    ||||||||| |||||||||||| || |||||||| |||||||||  ||| |||  |||||||||||||||||||||||||||||||    
T  2222193 taacatgaatttttgttttgtgctagttttttgttagtttgatcggtggttaaaggaggtaaaagagggttaacgggacgattagt 2222108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 96 - 172
Target Start/End: Original strand, 35193434 - 35193511
Alignment:
Q  96 taacagaggtaaaagagggttaacggg-acgattagtgatatggattattaatccacgtgttattgtataattgacta 172  Q
    |||| |||||||||||||||||||||| ||||||||||| |||||||| |||||||| ||||||| ||||||||||||    
T  35193434 taacggaggtaaaagagggttaacggggacgattagtgacatggattagtaatccacatgttattttataattgacta 35193511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 45 - 168
Target Start/End: Original strand, 44539474 - 44539598
Alignment:
Q  45 gtaacatgaaattttgttttgtgataattttttgtgagtttgatctttggataacagaggtaaaagagggttaac-gggacgattagtgatatggattat 143  Q
    |||||||||  |||||||||||| |  ||||||||||||||||| | ||| ||||  |||||||||| ||||||| | ||| |||| ||| ||| ||||     
T  44539474 gtaacatgattttttgttttgtgcttgttttttgtgagtttgatttgtggttaacgaaggtaaaagaaggttaactgtgacaattaatgacatgaattag 44539573  T
Q  144 taatccacgtgttattgtataattg 168  Q
    |||||||||||||||| ||||||||    
T  44539574 taatccacgtgttattttataattg 44539598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 45 - 113
Target Start/End: Original strand, 25047896 - 25047963
Alignment:
Q  45 gtaacatgaaattttgttttgtgataattttttgtgagtttgatctttggataacagaggtaaaagagg 113  Q
    ||||||||| ||||||||| ||| || |||| |||||||||||||| ||| |||| |||||||||||||    
T  25047896 gtaacatgagattttgtttagtgctagtttt-tgtgagtttgatctgtggttaacggaggtaaaagagg 25047963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 56 - 121
Target Start/End: Original strand, 35193373 - 35193439
Alignment:
Q  56 ttttgttttgtgataatttttt-gtgagtttgatctttggataacagaggtaaaagagggttaacgg 121  Q
    |||||||||||| || |||||| ||| || |||||| ||| |||| |||||||||||||||||||||    
T  35193373 ttttgttttgtgctagtttttttgtgggtgtgatctatggttaacggaggtaaaagagggttaacgg 35193439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 45 - 153
Target Start/End: Complemental strand, 27339622 - 27339513
Alignment:
Q  45 gtaacatgaaattttgttttgtgataattttttgtgagtttgatctttggataacagaggtaaaagagggttaacgg-gacgattagtgatatggattat 143  Q
    |||||||||  ||||| |||||| || |||||||||| |||||| | | | |||| || ||||||  |||||||| | |||||||||||| ||| ||||     
T  27339622 gtaacatgagtttttggtttgtgctagttttttgtgaatttgatatgtagttaacggatgtaaaatggggttaacagagacgattagtgacatgaattag 27339523  T
Q  144 taatccacgt 153  Q
    ||||||||||    
T  27339522 taatccacgt 27339513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 46 - 167
Target Start/End: Original strand, 3441 - 3562
Alignment:
Q  46 taacatgaaattttgttttgtgataattttttgtgagtttgatctttggataacagaggtaaaagagggttaacg-ggacgattagtgatatggattatt 144  Q
    ||||||||  |||||||||||| || ||||| ||||||||||| | ||| |||| |||||||||||||||||||  |||||||||||||||||||||| |    
T  3441 taacatgagtttttgttttgtgctagttttt-gtgagtttgatgtgtggttaacggaggtaaaagagggttaacatggacgattagtgatatggattagt 3539  T
Q  145 aatccacgtgttattgtataatt 167  Q
    ||||||||||||||| |||||||    
T  3540 aatccacgtgttattttataatt 3562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 62; Significance: 7e-27; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 56 - 172
Target Start/End: Original strand, 5592652 - 5592769
Alignment:
Q  56 ttttgttttgtgataattttttgtgagtttgatctttggataacagaggtaaaagagggttaacggga-cgattagtgatatggattattaatccacgtg 154  Q
    ||||||||||||  | ||||||||||||||||| | ||| ||||||||||||||| |||| |||| || |||||||||| |||||||| |||||||||||    
T  5592652 ttttgttttgtgccagttttttgtgagtttgatatgtggttaacagaggtaaaagtgggtcaacgagaacgattagtgacatggattagtaatccacgtg 5592751  T
Q  155 ttattgtataattgacta 172  Q
    ||||| ||||||||||||    
T  5592752 ttattttataattgacta 5592769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 45 - 168
Target Start/End: Complemental strand, 24432361 - 24432237
Alignment:
Q  45 gtaacatgaaattttgttttgtgataattttttgtgagtttgatctttggataacagaggtaaaagagggttaac-gggacgattagtgatatggattat 143  Q
    |||||||||  ||||||||| || || ||||||||||||||||| | | | |||| || |||||||||||||||| |||||||||||||| ||| ||||     
T  24432361 gtaacatgagtttttgttttatgctagttttttgtgagtttgatttgtagttaacggaagtaaaagagggttaacggggacgattagtgacatgaattag 24432262  T
Q  144 taatccacgtgttattgtataattg 168  Q
    || ||||| ||||||| ||||||||    
T  24432261 tattccacatgttattttataattg 24432237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 203
Target Start/End: Complemental strand, 32889105 - 32889073
Alignment:
Q  171 tatttgtatttaaaattaacggtatttttggaa 203  Q
    ||||||||||||||||||| |||||||||||||    
T  32889105 tatttgtatttaaaattaagggtatttttggaa 32889073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 62; Significance: 7e-27; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 56 - 172
Target Start/End: Complemental strand, 22833412 - 22833295
Alignment:
Q  56 ttttgttttgtgataattttttgtgagtttgatctttggataacagaggtaaaagagggttaacggga-cgattagtgatatggattattaatccacgtg 154  Q
    ||||||||||||  | ||||||||||||||||| | ||| ||||||||||||||| |||| |||| || |||||||||| |||||||| |||||||||||    
T  22833412 ttttgttttgtgccagttttttgtgagtttgatatgtggttaacagaggtaaaagtgggtcaacgagaacgattagtgacatggattagtaatccacgtg 22833313  T
Q  155 ttattgtataattgacta 172  Q
    ||||| ||||||||||||    
T  22833312 ttattttataattgacta 22833295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 45 - 168
Target Start/End: Complemental strand, 44822349 - 44822225
Alignment:
Q  45 gtaacatgaaattttgttttgtgataattttttgtgagtttgatctttggataacagaggtaaaagagggttaac-gggacgattagtgatatggattat 143  Q
    |||||||||  || ||||||||| || |||||||| |||||||||||||| ||||||| |||||||||||||||| |||||||||||||| ||| ||||     
T  44822349 gtaacatgagtttatgttttgtgctagttttttgtaagtttgatctttggttaacagatgtaaaagagggttaacggggacgattagtgacatgaattag 44822250  T
Q  144 taatccacgtgttattgtataattg 168  Q
    ||||||| ||||| || ||||||||    
T  44822249 taatccatgtgttgttttataattg 44822225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 121 - 200
Target Start/End: Complemental strand, 22176534 - 22176455
Alignment:
Q  121 ggacgattagtgatatggattattaatccacgtgttattgtataattgactatttgtatttaaaattaacggtatttttg 200  Q
    ||||||||||||| |||||||| |||||||||||||||| |||||||| |||||||||||||||||||| ||||||||||    
T  22176534 ggacgattagtgacatggattactaatccacgtgttattttataattggctatttgtatttaaaattaagggtatttttg 22176455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 122 - 200
Target Start/End: Complemental strand, 22101588 - 22101510
Alignment:
Q  122 gacgattagtgatatggattattaatccacgtgttattgtataattgactatttgtatttaaaattaacggtatttttg 200  Q
    |||||||||||| |||||||| |||||||||||||||| |||||||| |||||||||||||||||||| ||||||||||    
T  22101588 gacgattagtgacatggattactaatccacgtgttattttataattggctatttgtatttaaaattaaaggtatttttg 22101510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 45 - 166
Target Start/End: Complemental strand, 22102057 - 22101935
Alignment:
Q  45 gtaacatgaaattttgttttgtgataattttttgtgagtttgatctttggataacagaggtaaaagagggttaa-cgggacgattagtgatatggattat 143  Q
    |||||||||  |||||||| ||| || ||||||||||||||||| | ||| |||| ||||||||||||||||||  |||||||||||||| ||||||||     
T  22102057 gtaacatgactttttgtttagtgctagttttttgtgagtttgatttgtggttaacggaggtaaaagagggttaatggggacgattagtgacatggattag 22101958  T
Q  144 taatccacgtgttattgtataat 166  Q
    ||||||| |||||||| ||||||    
T  22101957 taatccatgtgttattttataat 22101935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 45 - 168
Target Start/End: Complemental strand, 28096418 - 28096294
Alignment:
Q  45 gtaacatgaaattttgttttgtgataattttttgtgagtttgatctttggataacagaggtaaaagagggttaacg-ggacgattagtgatatggattat 143  Q
    |||||||||  |||| ||||||| || ||||||||||||||||||| ||  |||| |||| ||||||||||||||| ||||||||||||| ||||||||     
T  28096418 gtaacatgagtttttcttttgtgctagttttttgtgagtttgatctgtgattaacggagggaaaagagggttaacgaggacgattagtgacatggattag 28096319  T
Q  144 taatccacgtgttattgtataattg 168  Q
    ||||| || ||||||| ||||||||    
T  28096318 taatcaacatgttattttataattg 28096294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 45 - 168
Target Start/End: Complemental strand, 35369205 - 35369082
Alignment:
Q  45 gtaacatgaaattttgttttgtgataattttttgtgagtttgatctttggataacagaggtaaaagagggttaacggg-acgattagtgatatggattat 143  Q
    |||||||||  |||||||||||| || ||||||||||||||||||| ||| || | ||||||||||| |||||| ||| ||||||||||| ||||||||     
T  35369205 gtaacatgagtttttgttttgtgctagttttttgtgagtttgatctgtggtta-cggaggtaaaagatggttaatggggacgattagtgacatggattag 35369107  T
Q  144 taatccacgtgttattgtataattg 168  Q
    ||||||| |||||||| ||||||||    
T  35369106 taatccatgtgttattttataattg 35369082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 45 - 172
Target Start/End: Original strand, 3422576 - 3422703
Alignment:
Q  45 gtaacatgaaattttgttttgtgataattttttgtgagtttgatctttggataacagaggtaaaagagggttaacggg-acgattagtgatatggattat 143  Q
    |||||||||  |||||||||||| || ||||||||||||||||| | | ||| || |||||||||||||| ||||||| |||||||  || ||||||||     
T  3422576 gtaacatgagtttttgttttgtgctagttttttgtgagtttgatatgt-gattacggaggtaaaagagggataacgggtacgattaaagacatggattaa 3422674  T
Q  144 taatccacgtgttattgtataattgacta 172  Q
    |||||||| ||||| | ||||||||||||    
T  3422675 taatccacatgttactttataattgacta 3422703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 45 - 166
Target Start/End: Complemental strand, 22177004 - 22176882
Alignment:
Q  45 gtaacatgaaattttgttttgtgataattttttgtgagtttgatctttggataacagaggtaaaagagggttaacggg-acgattagtgatatggattat 143  Q
    |||||||||  |||||||| ||| |  ||||||||||||||||| | ||  |||| ||||||||| |||||||| ||| ||||||||||| ||||||||     
T  22177004 gtaacatgactttttgtttagtgctggttttttgtgagtttgatttgtgattaacggaggtaaaaaagggttaatggggacgattagtgacatggattag 22176905  T
Q  144 taatccacgtgttattgtataat 166  Q
    ||||||| |||||||| ||||||    
T  22176904 taatccatgtgttattttataat 22176882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 56 - 172
Target Start/End: Original strand, 7116525 - 7116639
Alignment:
Q  56 ttttgttttgtgataattttttgtgagtttgatctttggataacagaggtaaaagagggttaac-gggacgattagtgatatggattattaatccacgtg 154  Q
    |||||||||||| ||||||||||||||||| || | ||  |||| ||||||||   |||||||| ||||| |||||||| ||| || |||||| ||||||    
T  7116525 ttttgttttgtgctaattttttgtgagttttatttgtgattaacggaggtaaa---gggttaaccgggacaattagtgacatgaatcattaattcacgtg 7116621  T
Q  155 ttattgtataattgacta 172  Q
    ||||| ||||||||||||    
T  7116622 ttattttataattgacta 7116639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 45 - 167
Target Start/End: Complemental strand, 34492200 - 34492078
Alignment:
Q  45 gtaacatgaaattttgttttgtgataattttttgtgagtttgatctttggataacagaggtaaaagagggttaacggga-cgattagtgatatggattat 143  Q
    |||||||||  |||||||||||| || ||||||||||||||||||| | | ||  | ||||||||||| |||||||| | | |||||||| ||||||||     
T  34492200 gtaacatgagtttttgttttgtgctagttttttgtgagtttgatctatagttacga-aggtaaaagagagttaacggaaactattagtgacatggattag 34492102  T
Q  144 taatccacgtgttattgtataatt 167  Q
    |||| ||||||||||| |||||||    
T  34492101 taattcacgtgttattttataatt 34492078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 45 - 168
Target Start/End: Original strand, 35863628 - 35863750
Alignment:
Q  45 gtaacatgaaattttgttttgtgataattttttgtgagtttgatctttggataacagaggtaaaagagggttaacggg-acgattagtgatatggattat 143  Q
    |||||||||  |||||||||||| || ||| ||||||||||||| | |||   ||  || || |||| |||||||||| ||||||||||| ||||||||     
T  35863628 gtaacatgagtttttgttttgtgctagtttcttgtgagtttgatatgtggt--acgaagatataagatggttaacggggacgattagtgacatggattag 35863725  T
Q  144 taatccacgtgttattgtataattg 168  Q
    |||||||||||||||| ||||||||    
T  35863726 taatccacgtgttattttataattg 35863750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 45 - 168
Target Start/End: Complemental strand, 53359620 - 53359495
Alignment:
Q  45 gtaacatgaaattttgttttgtgataattttttg-tgagtttgatctttggataacagaggtaaaagagggttaac-gggacgattagtgatatggatta 142  Q
    |||||||||  |||||||||||| || ||||||  |||||||||  | ||| |||| ||||||||||||||||||| |||| ||||||||| ||| ||||    
T  53359620 gtaacatgagtttttgttttgtgctagtttttttctgagtttgacttgtggttaacggaggtaaaagagggttaacggggatgattagtgacatgaatta 53359521  T
Q  143 ttaatccacgtgttattgtataattg 168  Q
     |||| |||||| |||| ||||||||    
T  53359520 ataattcacgtgctattttataattg 53359495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 72 - 167
Target Start/End: Original strand, 7115944 - 7116040
Alignment:
Q  72 ttttttgtgagtttgatctttggataacagaggtaaaagagggttaac-gggacgattagtgatatggattattaatccacgtgttattgtataatt 167  Q
    |||||||||||||| || |  || |||| ||||||||||||| ||||| ||||| |||||| | ||||| || |||| ||||||||||| |||||||    
T  7115944 ttttttgtgagtttaatttggggttaacggaggtaaaagaggattaacggggacaattagtaacatggactagtaatacacgtgttattttataatt 7116040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0123 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: scaffold0123
Description:

Target: scaffold0123; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 45 - 168
Target Start/End: Original strand, 17180 - 17304
Alignment:
Q  45 gtaacatgaaattttgttttgtgataattttttgtgagtttgatctttggataacagaggtaaaagagggttaacgg-gacgattagtgatatggattat 143  Q
    |||||||||| ||||||||||||||| ||||||||| ||||||||| ||| |||| ||  ||||||||||||||||| ||| |||||||| ||||||||     
T  17180 gtaacatgaatttttgttttgtgatagttttttgtgtgtttgatctatggttaacggaactaaaagagggttaacggagacaattagtgacatggattag 17279  T
Q  144 taatccacgtgttattgtataattg 168  Q
    ||||||| || ||||| ||||||||    
T  17280 taatccatgtattattttataattg 17304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 59; Significance: 4e-25; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 45 - 206
Target Start/End: Complemental strand, 9329818 - 9329658
Alignment:
Q  45 gtaacatgaaattttgttttgtgataattttttgtgagtttgatctttggataacagaggtaaaagagggttaacgg-gacgattagtgatatggattat 143  Q
    |||||||||  |||| ||||||| || ||||||| ||||||||| ||||| |||| |||||||||||||  |||| | || ||||| ||| ||||||||     
T  9329818 gtaacatgagtttttattttgtgctagttttttgcgagtttgat-tttggttaac-gaggtaaaagaggtctaacagagatgattaatgacatggattac 9329721  T
Q  144 taatccacgtgttattgtataattgactatttgtatttaaaattaacggtatttttggaagaa 206  Q
    |||||||| ||||||| |||||||| |||||| ||||||||||||| |||||||||| |||||    
T  9329720 taatccacatgttattttataattgtctatttatatttaaaattaagggtatttttgaaagaa 9329658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 56 - 168
Target Start/End: Original strand, 20621211 - 20621324
Alignment:
Q  56 ttttgttttgtgataattttttgtgagtttgatctttggataacagaggtaaaagagggttaac-gggacgattagtgatatggattattaatccacgtg 154  Q
    |||||||||||| || ||||||||||||||||| | ||| |||| |||||||||||  |||||| |||||||||||||| |||||||| ||||| || ||    
T  20621211 ttttgttttgtgctagttttttgtgagtttgatttgtggttaacggaggtaaaagaaagttaacggggacgattagtgacatggattagtaatctacttg 20621310  T
Q  155 ttattgtataattg 168  Q
    ||||| ||||||||    
T  20621311 ttattttataattg 20621324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 45 - 168
Target Start/End: Complemental strand, 35492305 - 35492182
Alignment:
Q  45 gtaacatgaaattttgttttgtgataattttttgtgagtttgatctttggataacagaggtaaaagagggttaacg-ggacgattagtgatatggattat 143  Q
    |||||||||  |||||||||||| || ||||||||||| ||||||| ||| |||| ||||||||| |||||||||| ||| ||||||||| ||| ||||     
T  35492305 gtaacatgagtttttgttttgtgctagttttttgtgagcttgatctatggttaacggaggtaaaa-agggttaacgaggatgattagtgacatgaattag 35492207  T
Q  144 taatccacgtgttattgtataattg 168  Q
    |||||||| ||||||| ||||||||    
T  35492206 taatccacatgttattttataattg 35492182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 45 - 165
Target Start/End: Complemental strand, 9306768 - 9306648
Alignment:
Q  45 gtaacatgaaattttgttttgtgataattttttgtgagtttgatctttggataacagaggtaaaagagggttaac-gggacgattagtgatatggattat 143  Q
    |||||||||  |||||||||||| |||||||||||||||||||| | ||| | || | |||||||||||||||||   |||||||||| | |||||||||    
T  9306768 gtaacatgagtttttgttttgtgctaattttttgtgagtttgatatgtgg-ttacggtggtaaaagagggttaacaatgacgattagttacatggattat 9306670  T
Q  144 taatccacgtgttattgtataa 165  Q
    ||||||||| |||||| |||||    
T  9306669 taatccacgagttattttataa 9306648  T

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Target: chr7; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 45 - 165
Target Start/End: Complemental strand, 9302330 - 9302210
Alignment:
Q  45 gtaacatgaaattttgttttgtgataattttttgtgagtttgatctttggataacagaggtaaaagagggttaacgg-gacgattagtgatatggattat 143  Q
    |||||||||  |||||||||||  |||||||||||||||||||| | ||| || | | |||||||||||||||||   |||||||||| | |||||||||    
T  9302330 gtaacatgagtttttgttttgttctaattttttgtgagtttgatatgtggtta-cggtggtaaaagagggttaacaatgacgattagttacatggattat 9302232  T
Q  144 taatccacgtgttattgtataa 165  Q
    ||||||||| |||||| |||||    
T  9302231 taatccacgagttattttataa 9302210  T

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Target: chr7; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 45 - 168
Target Start/End: Original strand, 41755381 - 41755505
Alignment:
Q  45 gtaacatgaaattttgttttgtgataattttttgtgagtttgatctttggataacagaggtaaaagagggttaac-gggacgattagtgatatggattat 143  Q
    |||||||||  |||| ||||||| || ||||||||||||||||| | ||| |||   |||||||||||||||||| ||||||||| |||| ||| ||||     
T  41755381 gtaacatgagtttttattttgtgctagttttttgtgagtttgatttatggttaatgtaggtaaaagagggttaacggggacgattggtgacatgaattag 41755480  T
Q  144 taatccacgtgttattgtataattg 168  Q
    |||||||| ||||||| || |||||    
T  41755481 taatccacatgttattttacaattg 41755505  T

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Target: chr7; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 45 - 159
Target Start/End: Original strand, 9307675 - 9307787
Alignment:
Q  45 gtaacatgaaattttgttttgtgataattttttgtgagtttgatctttggataacagaggtaaaagagggttaac-gggacgattagtgatatggattat 143  Q
    |||||||||  |||||||||||| || |||||||  |||||||| | ||| |||| ||||||||||||||||||| ||||||| |||||| ||||||||     
T  9307675 gtaacatgagtttttgttttgtgctagttttttg--agtttgatttgtggttaacggaggtaaaagagggttaacggggacga-tagtgacatggattag 9307771  T
Q  144 taatccacgtgttatt 159  Q
    |||| |||||| ||||    
T  9307772 taatgcacgtgctatt 9307787  T

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Target: chr7; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 73 - 168
Target Start/End: Original strand, 11321252 - 11321347
Alignment:
Q  73 tttttgtgagtttgatctttggataacagaggtaaaagagggttaacggg-acgattagtgatatggattattaatccacgtgttattgtataattg 168  Q
    |||||||||||||||||| ||| || | |||||||||||||||||| ||| ||||||||||| ||| |||| |||| || |||||||| ||||||||    
T  11321252 tttttgtgagtttgatctgtggtta-cggaggtaaaagagggttaatggggacgattagtgacatgaattagtaattcatgtgttattttataattg 11321347  T

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Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 45 - 119
Target Start/End: Complemental strand, 47912259 - 47912185
Alignment:
Q  45 gtaacatgaaattttgttttgtgataattttttgtgagtttgatctttggataacagaggtaaaagagggttaac 119  Q
    |||| ||||| ||||||||||||||| ||||||||||||||||| | ||| |||| || |||||| |||||||||    
T  47912259 gtaatatgaatttttgttttgtgatagttttttgtgagtttgatttgtggttaacggatgtaaaatagggttaac 47912185  T

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Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 61 - 165
Target Start/End: Complemental strand, 47221112 - 47221007
Alignment:
Q  61 ttttgtgataattttttgtgagtttgatctttggataacagaggtaaaagagggttaac-gggacgattagtgatatggattattaatccacgtgttatt 159  Q
    ||||||| || |||||| |||||||||| |  || |||| ||||||||||||||||| | ||||| |||||||| ||| |||| |||| |||||||||||    
T  47221112 ttttgtgctagttttttatgagtttgatatgaggttaacggaggtaaaagagggttagctgggacaattagtgacatgaattagtaattcacgtgttatt 47221013  T
Q  160 gtataa 165  Q
     |||||    
T  47221012 ttataa 47221007  T

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Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 45 - 122
Target Start/End: Original strand, 9303237 - 9303312
Alignment:
Q  45 gtaacatgaaattttgttttgtgataattttttgtgagtttgatctttggataacagaggtaaaagagggttaacggg 122  Q
    |||||||||  |||||||||||| || |||||||  |||||||| | ||| |||| ||||||||||||||||||||||    
T  9303237 gtaacatgagtttttgttttgtgctagttttttg--agtttgatttgtggttaacggaggtaaaagagggttaacggg 9303312  T

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Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 47 - 150
Target Start/End: Complemental strand, 39677963 - 39677858
Alignment:
Q  47 aacatgaaattttgttttgtgataattttttgtgagtttgatctttggataacagaggt-aaaagagggttaacg-ggacgattagtgatatggattatt 144  Q
    |||||||  ||||||||||||  |  |||||||||||||||||  | | |||||||||| |||| |||||||||| ||| ||| ||||| |||||||| |    
T  39677963 aacatgagtttttgttttgtgcaagatttttgtgagtttgatcagtagttaacagaggtaaaaaaagggttaacgaggatgatcagtgacatggattagt 39677864  T
Q  145 aatcca 150  Q
    ||||||    
T  39677863 aatcca 39677858  T

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Target: scaffold0990 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0990
Description:

Target: scaffold0990; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 56 - 122
Target Start/End: Complemental strand, 1075 - 1010
Alignment:
Q  56 ttttgttttgtgataattttttgtgagtttgatctttggataacagaggtaaaagagggttaacggg 122  Q
    |||||||||||| || ||||||||||||||||| | ||| | || ||||||||||||||| ||||||    
T  1075 ttttgttttgtgctatttttttgtgagtttgatatgtgg-ttacggaggtaaaagagggtcaacggg 1010  T

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