View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2694_high_14 (Length: 249)
Name: NF2694_high_14
Description: NF2694
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2694_high_14 |
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Alignment Details
Target: chr4 (Bit Score: 127; Significance: 1e-65; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 1 - 183
Target Start/End: Original strand, 53310311 - 53310505
Alignment:
| Q |
1 |
ttacatgtaagtaaagttgtgctttaatttgtatgaataaaagggatattgattctgaaaaatgatattgtataacacacacatcatttttactaacaat |
100 |
Q |
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| T |
53310311 |
ttacatgtaagtaaagttgtgctttaatttgtatgaataaaagggatattgattctgaaaaatgatattgtata--acacacatcatttttactaacaat |
53310408 |
T |
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| Q |
101 |
cagcaaaaatattttgttttttctgaaaaaggacgcttttatg--------------catatagaataaaactaatagatacattgataagcaagag |
183 |
Q |
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| T |
53310409 |
cagcaaaagtattttgttttttctgaaaaaggacacttttatgtatgtgtgtgtgtatatatagaataaaactaatagatacattgataagcaagag |
53310505 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 201 - 239
Target Start/End: Original strand, 53310974 - 53311012
Alignment:
| Q |
201 |
atgaaataactaaggaaaaacatgaaatcaatcattcat |
239 |
Q |
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| T |
53310974 |
atgaaataactaaggaaaaacatgaaatcaatcattcat |
53311012 |
T |
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