View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2694_high_5 (Length: 357)
Name: NF2694_high_5
Description: NF2694
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2694_high_5 |
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Alignment Details
Target: chr2 (Bit Score: 262; Significance: 1e-146; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 18 - 345
Target Start/End: Complemental strand, 13976581 - 13976254
Alignment:
| Q |
18 |
gtttctttgtattctgttgattgacatagcatatcaacannnnnnngtgagtttgagatttgtgctgtttgttctttgtcgtcaccttttgttaaactaa |
117 |
Q |
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| T |
13976581 |
gtttctttgtattctgttgattgacatagcatatcaacatttttttgtgagtttgagatttgtgctgtttgttctttgtcgtcaccttttgttaaactaa |
13976482 |
T |
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| Q |
118 |
ctgcgacggcgcccaccatagccacaagaagtatgcaagatacaccaagaagtgcatactttttcccttggccttggccaccattattgtcatttcctcc |
217 |
Q |
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| T |
13976481 |
ctgcgacggcgcccaccatagccacaagaagtatgcaagatacaccaagaagtgcatactttttcccttggccttggccaccattattgtcatttcctcc |
13976382 |
T |
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| Q |
218 |
catattttatnnnnnnncaattaatttttctataaactatatagtannnnnnnncttatagccctttatttctgggcagtgtttttcaattgcccggtag |
317 |
Q |
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| T |
13976381 |
catattttataaaaaaacaattaatttttctataaactatatagtattttttttcttatagccctttatttctgggcagtgtttttcaattgcccggtag |
13976282 |
T |
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| Q |
318 |
ggagggctatgtttttcttctttatttt |
345 |
Q |
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| T |
13976281 |
ggagggctatgtttttcttctttatttt |
13976254 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 18 - 333
Target Start/End: Complemental strand, 13966413 - 13966096
Alignment:
| Q |
18 |
gtttctttgtattctgttgattgacatagcatatcaacannnnnnngtgagtttgagatttgtgctgtttgttctttgtcgtcaccttttgttaaactaa |
117 |
Q |
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| T |
13966413 |
gtttctttgaattttgttgattgacatagcatatcaacatttttttgcgagttagagatatgtgctttttgttctccatcgccaccctttgttaaactaa |
13966314 |
T |
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| Q |
118 |
ctgcgacggcgcccaccatagccacaagaagtatgcaagatacaccaagaagtgcatactttttcccttggccttggccaccattattgtcatttcctcc |
217 |
Q |
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| T |
13966313 |
ctgcgacgacgcctaccatagccacaagaagtatgcaagatacaccaagaagtgcatgctttttcccttggccttggccaccattattgtcatttcctcc |
13966214 |
T |
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| Q |
218 |
catattttatnnnnnnncaattaatttttctataaactatatagta--nnnnnnnnctta-tagccctttatttctgggcagtgtttttcaattgcccgg |
314 |
Q |
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| T |
13966213 |
catattttat-aaaaaacaattaatttttctataaactatatagtattttttttttcttattagccctttatttctgggcagtgtttttcaattgcccgg |
13966115 |
T |
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| Q |
315 |
tagggagggctatgttttt |
333 |
Q |
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||| ||||||||||||||| |
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| T |
13966114 |
tagagagggctatgttttt |
13966096 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 132 - 204
Target Start/End: Complemental strand, 13958782 - 13958710
Alignment:
| Q |
132 |
accatagccacaagaagtatgcaagatacaccaagaagtgcatactttttcccttggccttggccaccattat |
204 |
Q |
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|||||||| |||||||||||| |||| ||||||| ||||||| || |||| | |||| | || |||||||||| |
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| T |
13958782 |
accatagctacaagaagtatggaagaaacaccaacaagtgcaaaccttttactttggtcatgaccaccattat |
13958710 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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