View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2694_high_6 (Length: 353)
Name: NF2694_high_6
Description: NF2694
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2694_high_6 |
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Alignment Details
Target: chr1 (Bit Score: 303; Significance: 1e-170; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 14 - 337
Target Start/End: Complemental strand, 48107745 - 48107426
Alignment:
| Q |
14 |
agagggttggacagtatttggaaatggaacaattgaggaacgtatatcaaatgatggaaatagattcattgttgccagcaaaagaacacaatcattagat |
113 |
Q |
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| T |
48107745 |
agagggttggacagtatttggaaatggaacaattgaggaacgtatatcaaatgatggaaatagattcattgttgccagcaaaagaacacaatcattagat |
48107646 |
T |
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| Q |
114 |
agtttttcacaaacggttcagctagagaaaggattgatatacactttttcaggtaactaacttatgtttctctctcagtcactaacattcatcaaatgaa |
213 |
Q |
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| T |
48107645 |
agtttttcacaaacggttcagctagagaaaggattgatatatactttttcaggtaactaacttatgtt----tctcagtcactaacattcatcaaatgaa |
48107550 |
T |
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| Q |
214 |
tgtaaattatcatattgatcgttaattcatttgttttataaaacatattttgattgattttatttccacattcagcttggcttcagctgagtgaaggaag |
313 |
Q |
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| T |
48107549 |
tgtaaattatcatattgatcgttaattcatttgttttataaaacatattttgattgattttatttccacattcagcttggcttcagctgagtgaaggaag |
48107450 |
T |
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| Q |
314 |
tgacacaatttctgtggtatttaa |
337 |
Q |
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| T |
48107449 |
tgacacaatttctgtggtatttaa |
48107426 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 21 - 170
Target Start/End: Complemental strand, 48101322 - 48101173
Alignment:
| Q |
21 |
tggacagtatttggaaatggaacaattgaggaacgtatatcaaatgatggaaatagattcattgttgccagcaaaagaacacaatcattagatagttttt |
120 |
Q |
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| T |
48101322 |
tggaaagtgtttggaaatggaacaatcgaggaacgagtatcaaacaacggaaatagattcattgttgccagcaacagaacacaaccattggatagttttt |
48101223 |
T |
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| Q |
121 |
cacaaacggttcagctagagaaaggattgatatacactttttcaggtaac |
170 |
Q |
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| T |
48101222 |
cacagaaggtccaactgaagaaaggaatgatatatactttttctggtaac |
48101173 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 16 - 171
Target Start/End: Complemental strand, 48064074 - 48063919
Alignment:
| Q |
16 |
agggttggacagtatttggaaatggaacaattgaggaacgtatatcaaatgatggaaatagattcattgttgccagcaaaagaacacaatcattagatag |
115 |
Q |
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||||||||| ||| ||||||||||||||||| |||||||| ||||||||||||| |||||||||||||||||| ||||| |||| |||| |||| ||| | |
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| T |
48064074 |
agggttggagagtgtttggaaatggaacaatcgaggaacgaatatcaaatgatgaaaatagattcattgttgctagcaacagaagacaaacattggatgg |
48063975 |
T |
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| Q |
116 |
tttttcacaaacggttcagctagagaaaggattgatatacactttttcaggtaact |
171 |
Q |
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| T |
48063974 |
tttctcacagaaggtccaactgaagaaaggaatgatatacatgttttctggtaact |
48063919 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 37 - 170
Target Start/End: Complemental strand, 48068709 - 48068576
Alignment:
| Q |
37 |
atggaacaattgaggaacgtatatcaaatgatggaaatagattcattgttgccagcaaaagaacacaatcattagatagtttttcacaaacggttcagct |
136 |
Q |
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|||||||||| ||||||| | ||||||||||||||||| ||| ||||||| |||||| ||||||||| ||||||||||||| ||||||| || || || |
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| T |
48068709 |
atggaacaatcaaggaacgaacatcaaatgatggaaatacatttattgttgtcagcaacagaacacaaccattagatagtttatcacaaaaagtccaact |
48068610 |
T |
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| Q |
137 |
agagaaaggattgatatacactttttcaggtaac |
170 |
Q |
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||||||| | ||||||| | |||||| |||||| |
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| T |
48068609 |
ggagaaagaaatgatatatattttttctggtaac |
48068576 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 283 - 337
Target Start/End: Complemental strand, 48068498 - 48068444
Alignment:
| Q |
283 |
attcagcttggcttcagctgagtgaaggaagtgacacaatttctgtggtatttaa |
337 |
Q |
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| T |
48068498 |
attcagcttggttccagctgagtgaaggaagtgacacaatttctgtggtatttaa |
48068444 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 276 - 316
Target Start/End: Complemental strand, 48101084 - 48101044
Alignment:
| Q |
276 |
tttccacattcagcttggcttcagctgagtgaaggaagtga |
316 |
Q |
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| T |
48101084 |
tttccacattcagcttggtttcagttgagtgaaggaagtga |
48101044 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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