View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2694_high_7 (Length: 316)
Name: NF2694_high_7
Description: NF2694
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2694_high_7 |
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Alignment Details
Target: chr2 (Bit Score: 273; Significance: 1e-152; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 16 - 311
Target Start/End: Complemental strand, 3338308 - 3338015
Alignment:
| Q |
16 |
caataacaaagttttagatttcttttacttgattaattggaacttgagtaatagacaaagtgaactacattgcctatatatatacttataaatgttctaa |
115 |
Q |
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| T |
3338308 |
caataacaaagttttagatttcttttacttgttta--tggaacttgagtaatagacaaagtgaactacattgcctatatatatacttataaatgttctaa |
3338211 |
T |
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| Q |
116 |
tgtgtattcgatccttcaaagaacattaattggatatatccagattcgttatgttttctattttatttagataaacttttatgaaaatcagatactgact |
215 |
Q |
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| T |
3338210 |
tgtgtattcgatccttcaaagaacattaattagatatatccagattcgttatgttttctattttatttagataaacttttatgaaaatcagatactgact |
3338111 |
T |
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| Q |
216 |
taatttacatttttcctacattgagttcacagtcaaatcttctcctcaccgccaaataggaaaattaattatcattaattcaaatcttcttctcac |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
3338110 |
taatttacatttttcctacattgagttcacagtcaaatcttctcctcaccgccaaataggaaaattaattatcattaattcaaatcttctcctcac |
3338015 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 248 - 294
Target Start/End: Complemental strand, 3338031 - 3337985
Alignment:
| Q |
248 |
tcaaatcttctcctcaccgccaaataggaaaattaattatcattaat |
294 |
Q |
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| T |
3338031 |
tcaaatcttctcctcaccgccaaataggaaaattaattatcattaat |
3337985 |
T |
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