View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2694_low_1 (Length: 566)
Name: NF2694_low_1
Description: NF2694
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2694_low_1 |
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| [»] scaffold0624 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 496; Significance: 0; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 496; E-Value: 0
Query Start/End: Original strand, 11 - 551
Target Start/End: Complemental strand, 22709982 - 22709442
Alignment:
| Q |
11 |
agaatatcatgaaagatggattgtagggtacaaaagaggaaaaattggacgttctaattggaacaactttcacctaaatcattgttatgagaattttgat |
110 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22709982 |
agaatatcattaaagatggattgtagggtacaaaagaggaaaaattggacgttctaattggaacaactttcacctaaatcattgttatgagaattttgat |
22709883 |
T |
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| Q |
111 |
ctataatatatattctttgtatactatttttctttcatatgtgagcattcctccatgtgttcagtttcaagaattgcattcattcccannnnnnncgatg |
210 |
Q |
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| T |
22709882 |
ctataatatatattctttgtatactatttttctttcatatgtgagcattcctccatgtgttcagtttcaagaattgcattcattcccatttttttcgatg |
22709783 |
T |
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| Q |
211 |
acaaaatgtattataagcatatctcacccttttttgagttaggtagaagcgtttggatgtaattgtgttccaatttttagttttgaagaatccttgtttg |
310 |
Q |
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| T |
22709782 |
acaaaatgtattataagcatatctcacccttttttgagttaggtagaagcgtttggatgtaattgtgttccaatttttagttttgaagaatccttgtttg |
22709683 |
T |
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| Q |
311 |
acaacgaaaactgatgttggatgaaaatgcgtttggaatcaatttttaagaatcatgtttgcagagttactttttcaaaatcatgtttgaagaaagctat |
410 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
22709682 |
acaacgaaaactgatgttggatgaaagtgcgtttggaatcaatttttaagaatcatgtttgcagagtcactttttcaaaatcatgtttgaagaaagctat |
22709583 |
T |
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| Q |
411 |
tttggttgaaatcttttaggattagcgtttcaaaagttgtcaacgtgaaactacgaagtagaagatgaaggtgtgttgtgttgttggacaattttcatct |
510 |
Q |
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| T |
22709582 |
tttggttgaaatcttttaggattagcgtttcaaaagtagtcaacgtgaaactacgaagtagaagatgaaggtgtattgtgttgttgggcaattttcatct |
22709483 |
T |
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| Q |
511 |
cactttctcacaacagagggtctttagtcaatgcctatttt |
551 |
Q |
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| T |
22709482 |
cactttctcacaacagagggtctttagtcaatgcctatttt |
22709442 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 143; E-Value: 7e-75
Query Start/End: Original strand, 26 - 195
Target Start/End: Complemental strand, 22719772 - 22719602
Alignment:
| Q |
26 |
atggattgtagggtacaaaagaggaaaaa-ttggacgttctaattggaacaactttcacctaaatcattgttatgagaattttgatctataatatatatt |
124 |
Q |
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| T |
22719772 |
atggattgaagggtacaaaagaggaaaaaattggacgttctaattggaacaactttcacataaatcattgttatgagaattttgatctaaaatatatatt |
22719673 |
T |
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| Q |
125 |
ctttgtatactatttttctttcatatgtgagcattcctccatgtgttcagtttcaagaattgcattcattc |
195 |
Q |
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| T |
22719672 |
ctttgtatactatttttctttcatatgtgagcatccctccatgtgtttagtttcaagaattgcattcattc |
22719602 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 93 - 195
Target Start/End: Original strand, 23869221 - 23869324
Alignment:
| Q |
93 |
tgttatgagaattttgatctataatatatattcttt-gtatactatttttctttcatatgtgagcattcctccatgtgttcagtttcaagaattgcattc |
191 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23869221 |
tgttatgagaattttgatctataatatatattcttttgtatactatttttctttcatatgtgagcattcctccatgtgttcagtttcaagaattgcattc |
23869320 |
T |
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| Q |
192 |
attc |
195 |
Q |
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|||| |
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| T |
23869321 |
attc |
23869324 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 206 - 240
Target Start/End: Complemental strand, 22719464 - 22719430
Alignment:
| Q |
206 |
cgatgacaaaatgtattataagcatatctcaccct |
240 |
Q |
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| T |
22719464 |
cgatgacaaattgtattataagcatatctcaccct |
22719430 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 206 - 240
Target Start/End: Original strand, 23869459 - 23869493
Alignment:
| Q |
206 |
cgatgacaaaatgtattataagcatatctcaccct |
240 |
Q |
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| T |
23869459 |
cgatgacaaactgtattataagcatatctcaccct |
23869493 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0624 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0624
Description:
Target: scaffold0624; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 58 - 97
Target Start/End: Complemental strand, 2230 - 2191
Alignment:
| Q |
58 |
gacgttctaattggaacaactttcacctaaatcattgtta |
97 |
Q |
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| T |
2230 |
gacgttctgattggaacaactttcacataaatcattgtta |
2191 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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