View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2694_low_11 (Length: 313)
Name: NF2694_low_11
Description: NF2694
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2694_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 295; Significance: 1e-166; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 1 - 307
Target Start/End: Complemental strand, 14352761 - 14352455
Alignment:
| Q |
1 |
atcacaagaaacttcgcctcataaacttccaatatcccttctattgtgttctttgtttcaaccctccattcgcttctaatctcgtcatacttagcagact |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14352761 |
atcacaagaaacttcgcctcataaacttccaatatcccttctattgtgttctttgtttcaaccctccattcgcttctaatctcgtcatacttagcagact |
14352662 |
T |
|
| Q |
101 |
caactgtgcgacaatagtgagattttatgttgaaatgggcgacatatttgtctatgtattgaaggaattggtatttggataggtaggttgggcctgaggg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
14352661 |
caactgtgcgacaatagtgagattttatgttgaaatgggcgacatatttgtctatgtattgaaggaattggtatttcgataggtaggttgggcctgaggg |
14352562 |
T |
|
| Q |
201 |
tgggtgaggcatgaggggtaaagagcaaaactcactagccaagtgaaggtttaaacgatcatatgcatttttcctccaaagagaagcacaacaatcatat |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
14352561 |
tgggtgaggcatgaggggtaaagagcaaaactcactagccaagtgaaggtttaaacgatcatatgcatttttcctccaaagagaagcacaacaatcatct |
14352462 |
T |
|
| Q |
301 |
tcttcga |
307 |
Q |
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| ||||| |
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| T |
14352461 |
ttttcga |
14352455 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 157; Significance: 2e-83; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 1 - 296
Target Start/End: Original strand, 43886413 - 43886709
Alignment:
| Q |
1 |
atcacaagaaacttcgcctcataaacttccaatatcccttctattgtgttctttgtttcaaccctccattcgcttctaatctcgtcatacttagcagact |
100 |
Q |
| |
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|||||||||||||| |||||||||| ||||||||| |||||| | || ||||||||||||| |||||||| | ||||| || ||||||||||| ||| |
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| T |
43886413 |
atcacaagaaactttgcctcataaaattccaatattccttctttagtattctttgtttcaatcctccatttgtctctaacttcaccatacttagcatact |
43886512 |
T |
|
| Q |
101 |
caactgtgcgacaatagtgagattttatgttgaaatgggcgacatatttgtctatgtattgaaggaattggtatttggataggtaggttgggcctgaggg |
200 |
Q |
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|||||||||||||||| |||||||||||||| ||||| |||||||||||||||| || |||||||||||| ||||||||||||||||||||||||||| |
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| T |
43886513 |
caactgtgcgacaataatgagattttatgttaaaatgttcgacatatttgtctatataccgaaggaattggtctttggataggtaggttgggcctgaggg |
43886612 |
T |
|
| Q |
201 |
tgggtgaggcatgaggggtaaagagcaaaactcactagccaagtgaaggtttaaacgatcatatgca-tttttcctccaaagagaagcacaacaatc |
296 |
Q |
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||| | || |||||| |||| |||||||||||||||||||||||| ||||| ||||||||||| ||| ||||| |||||||||||| |||||||||| |
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| T |
43886613 |
tggataagacatgagaggtagagagcaaaactcactagccaagtggaggttcaaacgatcataagcatttttttctccaaagagaatcacaacaatc |
43886709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 140; Significance: 2e-73; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 45 - 296
Target Start/End: Complemental strand, 12380148 - 12379897
Alignment:
| Q |
45 |
tgtgttctttgtttcaaccctccattcgcttctaatctcgtcatacttagcagactcaactgtgcgacaatagtgagattttatgttgaaatgggcgaca |
144 |
Q |
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|||||||||||||| ||||||||||| | ||| || || || || | ||| || ||||| ||||||| ||| || ||||||||| ||||| ||||| |
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| T |
12380148 |
tgtgttctttgtttgaaccctccatttgtttccaacttcatcgtattcagcggattcaaccatgcgacagtagcaaggttttatgttaaaatgttcgaca |
12380049 |
T |
|
| Q |
145 |
tatttgtctatgtattgaaggaattggtatttggataggtaggttgggcctgagggtgggtgaggcatgaggggtaaagagcaaaactcactagccaagt |
244 |
Q |
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|||||||||||||||||||||||||||| |||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
12380048 |
tatttgtctatgtattgaaggaattggtctttggataggtatgttggtcctgagggtgggtgaggcatgaggggtaaagagcaaaactcactagccaaat |
12379949 |
T |
|
| Q |
245 |
gaaggtttaaacgatcatatgcatttttcctccaaagagaagcacaacaatc |
296 |
Q |
| |
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|||| |||||||||||||| |||||||| ||||||||||||||||||||||| |
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| T |
12379948 |
gaagatttaaacgatcataagcattttttctccaaagagaagcacaacaatc |
12379897 |
T |
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