View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2694_low_12 (Length: 309)
Name: NF2694_low_12
Description: NF2694
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2694_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 19 - 290
Target Start/End: Complemental strand, 32839088 - 32838807
Alignment:
| Q |
19 |
atgaagcattagctaacgaaaatacatatggtttggcttgtctatgtcttccccaccaaacaatggattcaacgtatacagaatatatctgtccagagac |
118 |
Q |
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| T |
32839088 |
atgaagcattagctaacgaaaatacatatggtttggcttgtctatgtcttccccaccaaacaatggattcaacgtatacagaatatatctgtccagagac |
32838989 |
T |
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| Q |
119 |
atattggcccctccaacattgaattcaatttcaatgtagactgcaacctttccacgttctactacaatattcccacacctgcctctgtcaaatactctat |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| |
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| T |
32838988 |
atattggcccctccaacattgaattcaatttcaatgtagactgcaacctttccacgttctcctacattattcccacacctgcctctgtcaaatactctat |
32838889 |
T |
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| Q |
219 |
cttca---nnnnnnnnnnnnaaggaaatactctatcttcataaagttca-------attaagatttttaaatcctatacata |
290 |
Q |
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||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
32838888 |
cttcatttttattttttttgaaggaaatactctatcttcataaagttcaatatttcattaagatttttaaatcctatacata |
32838807 |
T |
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