View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2694_low_2 (Length: 532)
Name: NF2694_low_2
Description: NF2694
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2694_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 248; Significance: 1e-137; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 262 - 529
Target Start/End: Original strand, 24543623 - 24543890
Alignment:
| Q |
262 |
tcttaacattattttctccaacaggcattgatgaaacaagtacatgttatacttgtgtgttgtgtgggaaagatttagaagataaagaggcagaggaaga |
361 |
Q |
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| T |
24543623 |
tcttaacattattttctccaacaggcattgatgaaacaagtacatgttatacttgtgtgttgtgtgggaaagatttagaagaggaagaggaagaggaaga |
24543722 |
T |
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| Q |
362 |
ttcaattcaagatggagaagatgagctacaacattatttattctcttcccaaggaagagaagatttgagtagtactgttttatctgaagttgctattctt |
461 |
Q |
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| T |
24543723 |
ttcaattcaagatggagaagatgagctacaacattatttattctcttcccaaggaagagaagatttgagtagtactgttttatctgaagttgctattctt |
24543822 |
T |
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| Q |
462 |
ccatgcagtcatatattccacgagacatgtttatctgctttgcccctaactactatctctgctcctcc |
529 |
Q |
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| T |
24543823 |
ccatgcagtcatatattccacgagacatgtttatctgctttgcccctaactactatcactgatcctcc |
24543890 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 188; E-Value: 1e-101
Query Start/End: Original strand, 18 - 214
Target Start/End: Original strand, 24543342 - 24543540
Alignment:
| Q |
18 |
gaaaggagaaagagaaccctacactttcacagaaaccacaagtttacaagaaaccagtaaatgaaaaacccaaacaccatattcgatgggaaggtacatt |
117 |
Q |
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| T |
24543342 |
gaaaggagaaagagaaccctacactttcacagaaaccacaagtttacaagaaaccagtaaatgaaaaacccaaacaccatattcgatgggaaggtacatt |
24543441 |
T |
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| Q |
118 |
gta--ctcatgtattgattttttatgcatctaactccttttaagtgaataactcactttaattatagttcaaagtaaatattatcaaccattgattaac |
214 |
Q |
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| T |
24543442 |
gtactctcatgtattgattttttatgcatctaactccttttaagtgaataactcactttaattatagttcaaagtaaatattatcaaccattgattaac |
24543540 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 194 - 248
Target Start/End: Original strand, 24543541 - 24543595
Alignment:
| Q |
194 |
tattatcaaccattgattaacaaatcaaagttagacattagaggtgcatcataac |
248 |
Q |
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| T |
24543541 |
tattatcaaccattgattaacaaatcaaagttagacattagaggtgcatcataac |
24543595 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 197 - 249
Target Start/End: Complemental strand, 39421626 - 39421574
Alignment:
| Q |
197 |
tatcaaccattgattaacaaatcaaagttagacattagaggtgcatcataaca |
249 |
Q |
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| T |
39421626 |
tatcaaccattgattaacaaatcaaaggtagatattagaagtacaccataaca |
39421574 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 200 - 228
Target Start/End: Complemental strand, 3859436 - 3859408
Alignment:
| Q |
200 |
caaccattgattaacaaatcaaagttaga |
228 |
Q |
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| T |
3859436 |
caaccattgattaacaaatcaaagttaga |
3859408 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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