View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2694_low_4 (Length: 432)
Name: NF2694_low_4
Description: NF2694
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2694_low_4 |
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Alignment Details
Target: chr6 (Bit Score: 267; Significance: 1e-149; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 1 - 299
Target Start/End: Complemental strand, 22219328 - 22219030
Alignment:
| Q |
1 |
cactcgggttaattatgtaagctagatgagtagtttcgtgagattggattagttaaacttttgtagtgaatgatccttatgtgatgaatgcatgggccga |
100 |
Q |
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| T |
22219328 |
cacttgggttaattatgtaagctagatgagtagttttatgagattggattagttaaacttttgtagtgaatgatccttatgtgatgaatgcatgggccaa |
22219229 |
T |
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| Q |
101 |
aacataccaagataacaagcatgtgaagtttcttgctaatcgttcagccatgtacactctttctttctaaaaggtttgctctcttgtttgaaaacctcaa |
200 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
22219228 |
aacataccgagataacaagcatgtgaagtttcttgctaatcgttcagccatgtacactctttctttctaaaaggttagctctcttgtttgaaaacctcaa |
22219129 |
T |
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| Q |
201 |
gtgtgaagattggtaatattgaaaatggaacagaatccttaaggtcctctaatgaatgtgtttaattttgctatgatatgtctatcattacctattagt |
299 |
Q |
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| T |
22219128 |
gtgtgaagattcgtaatattgaaaatggaacagaatccttaaggtcctctaatgaatatgtttaattttgctatgatatgtctatcattacctattagt |
22219030 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 9 - 91
Target Start/End: Complemental strand, 33103386 - 33103307
Alignment:
| Q |
9 |
ttaattatgtaagctagatgagtagtttcgtgagattggattagttaaacttttgtagtgaatgatccttatgtgatgaatgc |
91 |
Q |
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| T |
33103386 |
ttaattatgtaagctagatgactaattt---gagattagattaattaaacttttgtagtgaatgatccttatgtgatgaatgc |
33103307 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 59 - 150
Target Start/End: Complemental strand, 33125895 - 33125804
Alignment:
| Q |
59 |
ttttgtagtgaatgatccttatgtgatgaatgcatgggccgaaacataccaagataacaagcatgtgaagtttcttgctaatcgttcagcca |
150 |
Q |
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||||||||| |||||||| | |||| ||||| |||||||| | |||| || ||| ||||||||||| ||||| |||||| || |||| |||| |
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| T |
33125895 |
ttttgtagtcaatgatccatttgtgctgaattcatgggccaagacattcccagagaacaagcatgtcaagttccttgctgatggttctgcca |
33125804 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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