View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2694_low_5 (Length: 396)
Name: NF2694_low_5
Description: NF2694
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2694_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 18 - 322
Target Start/End: Original strand, 5067283 - 5067589
Alignment:
| Q |
18 |
attgtaagaaattaagagatggatttaattgaatcataatctctttttaatcgaatcttgtgttttggatgtataattaaattagttgttttctatttat |
117 |
Q |
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| T |
5067283 |
attgtaagaaattaagagatggatttaattgaatcataatctctttttaattgaatcttgtgttttggatgtataattaaattagttgttttctatttat |
5067382 |
T |
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| Q |
118 |
gtagggatgccacaagatttgtaaatttggcttgtttccgtaatttgttaaag--nnnnnnntgttatttcacgtgaaggaaccccttgggaacaatgta |
215 |
Q |
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| T |
5067383 |
gtagggatgccacaagatttgtaaatttggcttgtttccataatttgttaaagaaaaaaatatgttatttcacgtgaa-gaaccccttgggaacaatgta |
5067481 |
T |
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| Q |
216 |
ttccggtcaatccatttttattgacttca-tttttctcccaaaaccttaataatattttgctaattaaagcttatttctcattggtaagtttgactttct |
314 |
Q |
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| T |
5067482 |
ttccggtcaatccatttttattgacttcactttttctcccaaaaccttaatgatattttgctaattaaagcttatttctcattgataagtttgtctttct |
5067581 |
T |
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| Q |
315 |
tagcatca |
322 |
Q |
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|||||||| |
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| T |
5067582 |
tagcatca |
5067589 |
T |
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