View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2694_low_7 (Length: 357)
Name: NF2694_low_7
Description: NF2694
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2694_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 17 - 343
Target Start/End: Original strand, 33319659 - 33320001
Alignment:
| Q |
17 |
ttgtttaattcatgaaaacttttaaaaataattttagagaataggtaaaatatgttttgcttgcaatg----------------aacattataagtacac |
100 |
Q |
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| T |
33319659 |
ttgtttaattcatgaaaacttttaaaaataattttagagaataggtaaaatatgtttggcttgcaatgtagaatcctgcgaatgaacattataagtacac |
33319758 |
T |
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| Q |
101 |
aaatacccctattgtataaaccaaaaaatcaatgtgtgtaacacagtgttctccttctttacacttcagatttcacgtatatacttttgtttaaccattt |
200 |
Q |
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| T |
33319759 |
aaatacccctattgtataaaccaaaaaatcaatgtgtgtaacacagtgttctccttctttacacttcagatttcacgtatatgcttttgtttaaccattt |
33319858 |
T |
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| Q |
201 |
atgttgaatgcttacttttgaaatgtttccctagtaatgatattttcttgtgccatgatgataaattcattaacatgatgttccacacgttattggagat |
300 |
Q |
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| T |
33319859 |
atgttgaatgcttactttcgaaatgtttccctagtaatgatattttcttgtgccatgatgataaattcattaacatgatgttccacacgttattggagat |
33319958 |
T |
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| Q |
301 |
gtataattcttgagtaatctaacatcaaaggttgggtgaaaac |
343 |
Q |
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| T |
33319959 |
ttataattcttgagtaatctaacatcaaaggttgggtgaaaac |
33320001 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 69; Significance: 7e-31; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 221 - 329
Target Start/End: Original strand, 42669790 - 42669898
Alignment:
| Q |
221 |
aaatgtttccctagtaatgatattttcttgtgccatgatgataaattcattaacatgatgttccacacgttattggagatgtataattcttgagtaatct |
320 |
Q |
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| T |
42669790 |
aaatgtttccctaataacgatattttcttgtgccaggatgataaattcattgacatgatgttccagacattattgaagatgcataattcatgagtaatcg |
42669889 |
T |
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| Q |
321 |
aacatcaaa |
329 |
Q |
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| T |
42669890 |
aacatcaaa |
42669898 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 81 - 121
Target Start/End: Original strand, 13892811 - 13892851
Alignment:
| Q |
81 |
aatgaacattataagtacacaaatacccctattgtataaac |
121 |
Q |
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| T |
13892811 |
aatgaacattataattacataaatacccctattgtaaaaac |
13892851 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 81 - 121
Target Start/End: Original strand, 46883599 - 46883639
Alignment:
| Q |
81 |
aatgaacattataagtacacaaatacccctattgtataaac |
121 |
Q |
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| T |
46883599 |
aatgaacattataattacataaatacccctattgtaaaaac |
46883639 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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