View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2695_high_9 (Length: 329)

Name: NF2695_high_9
Description: NF2695
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2695_high_9
NF2695_high_9
[»] chr4 (4 HSPs)
chr4 (199-319)||(6671186-6671306)
chr4 (214-319)||(6667529-6667634)
chr4 (213-301)||(895676-895763)
chr4 (281-314)||(13250400-13250433)
[»] chr7 (4 HSPs)
chr7 (199-319)||(31209870-31209990)
chr7 (212-319)||(31206445-31206554)
chr7 (250-316)||(2609491-2609557)
chr7 (24-113)||(13816274-13816364)
[»] chr2 (4 HSPs)
chr2 (214-319)||(1043561-1043666)
chr2 (24-113)||(10940946-10941036)
chr2 (24-113)||(10946815-10946905)
chr2 (262-316)||(13437548-13437602)
[»] chr8 (1 HSPs)
chr8 (250-319)||(1788745-1788814)
[»] scaffold0007 (1 HSPs)
scaffold0007 (214-299)||(26118-26203)
[»] scaffold0933 (1 HSPs)
scaffold0933 (250-316)||(965-1031)
[»] chr1 (4 HSPs)
chr1 (24-113)||(49390428-49390518)
chr1 (250-318)||(38825322-38825390)
chr1 (250-318)||(38828534-38828600)
chr1 (250-316)||(49873036-49873103)
[»] chr6 (1 HSPs)
chr6 (24-113)||(24044446-24044536)
[»] chr5 (1 HSPs)
chr5 (228-314)||(31307220-31307306)


Alignment Details
Target: chr4 (Bit Score: 109; Significance: 8e-55; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 199 - 319
Target Start/End: Original strand, 6671186 - 6671306
Alignment:
Q  199 taaaatcctcaagattgttgtataatttgtcataagaattatccaaagatcataatcatcatatataaatagaagcatcaataaaatatagctaaaagag 298  Q
    ||||||||||||||||||||||||||| ||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6671186 taaaatcctcaagattgttgtataattagtcgtaagaattatccaaaaatcataatcatcatatataaatagaagcatcaataaaatatagctaaaagag 6671285  T
Q  299 agaacaataaacttatctgtg 319  Q
    |||||||||||||||||||||    
T  6671286 agaacaataaacttatctgtg 6671306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 214 - 319
Target Start/End: Original strand, 6667529 - 6667634
Alignment:
Q  214 tgttgtataatttgtcataagaattatccaaagatcataatcatcatatataaatagaagcatcaataaaatatagctaaaagagagaacaataaactta 313  Q
    |||||||||||| ||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6667529 tgttgtataattagtcataagaattatccaaaaatcataatcatcaaatataaatagaagcatcaataaaatatagctaaaagagagaacaataaactta 6667628  T
Q  314 tctgtg 319  Q
    | ||||    
T  6667629 tatgtg 6667634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 213 - 301
Target Start/End: Complemental strand, 895763 - 895676
Alignment:
Q  213 ttgttgtataatttgtcataagaattatccaaagatcataatcatcatatataaatagaagcatcaataaaatatagctaaaagagaga 301  Q
    ||||||||||||| ||||| ||||||||| | | || ||||||||||||||||| ||||||||||||||||| ||||||||||||||||    
T  895763 ttgttgtataattagtcatgagaattatctacaaataataatcatcatatataattagaagcatcaataaaa-atagctaaaagagaga 895676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 281 - 314
Target Start/End: Original strand, 13250400 - 13250433
Alignment:
Q  281 aaaatatagctaaaagagagaacaataaacttat 314  Q
    ||||||||| ||||||||||||||||||||||||    
T  13250400 aaaatataggtaaaagagagaacaataaacttat 13250433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 89; Significance: 7e-43; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 199 - 319
Target Start/End: Original strand, 31209870 - 31209990
Alignment:
Q  199 taaaatcctcaagattgttgtataatttgtcataagaattatccaaagatcataatcatcatatataaatagaagcatcaataaaatatagctaaaagag 298  Q
    |||||||||||||||||||||| |||| ||||||||| ||||| | | || |||||||||||||||||||||||||||||||||||||||| ||||||||    
T  31209870 taaaatcctcaagattgttgtagaattagtcataagagttatctacaaataataatcatcatatataaatagaagcatcaataaaatatagataaaagag 31209969  T
Q  299 agaacaataaacttatctgtg 319  Q
    |||||||||||||||||||||    
T  31209970 agaacaataaacttatctgtg 31209990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 212 - 319
Target Start/End: Original strand, 31206445 - 31206554
Alignment:
Q  212 attgttgtataatttgtcataagaattatccaaagatcataatcatcatatataaatagaagcatcaataaaatatagctaaa--agagagaacaataaa 309  Q
    ||||||||| |||| ||||||||||||||| | | || |||||||||||||||||||||||||||| ||||||||||||||||  |||||||||||||||    
T  31206445 attgttgtagaattagtcataagaattatctacaaataataatcatcatatataaatagaagcatcgataaaatatagctaaaagagagagaacaataaa 31206544  T
Q  310 cttatctgtg 319  Q
    ||||||||||    
T  31206545 cttatctgtg 31206554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 250 - 316
Target Start/End: Original strand, 2609491 - 2609557
Alignment:
Q  250 ataatcatcatatataaatagaagcatcaataaaatatagctaaaagagagaacaataaacttatct 316  Q
    ||||||| ||| |||||||| |||| |||||||||||||| ||||||||||||||||||||||||||    
T  2609491 ataatcaacatttataaatataagcctcaataaaatataggtaaaagagagaacaataaacttatct 2609557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 24 - 113
Target Start/End: Complemental strand, 13816364 - 13816274
Alignment:
Q  24 tgttcttcaaataattaatcatgataaaggacaacaaaagtaatcccaaaacaattgtatattat-ataatagatcaacaataatttatac 113  Q
    ||||||| |||||||||| |||||||  ||||||||||| |||||||||||||||| || ||||| |||||| |||||||| |||||||||    
T  13816364 tgttcttaaaataattaagcatgataggggacaacaaaaataatcccaaaacaattctacattataataataaatcaacaacaatttatac 13816274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 70; Significance: 2e-31; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 214 - 319
Target Start/End: Complemental strand, 1043666 - 1043561
Alignment:
Q  214 tgttgtataatttgtcataagaattatccaaagatcataatcatcatatataaatagaagcatcaataaaatatagctaaaagagagaacaataaactta 313  Q
    ||||||| |||| ||||||||||||||| | | |  ||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||    
T  1043666 tgttgtaaaattagtcataagaattatctacaaaaaataatcatcatatataaatagaagcatcaataaaatatagctataagagaaaacaataaactta 1043567  T
Q  314 tctgtg 319  Q
    ||||||    
T  1043566 tctgtg 1043561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 24 - 113
Target Start/End: Original strand, 10940946 - 10941036
Alignment:
Q  24 tgttcttcaaataattaatcatgataaaggacaacaaaagtaatcccaaaacaattgtatattat-ataatagatcaacaataatttatac 113  Q
    ||||||| |||||||||| |||||||| ||||||||||| |||||||||||||||| || ||||| |||||| ||||||||||||||||||    
T  10940946 tgttcttaaaataattaagcatgataagggacaacaaaaataatcccaaaacaattctacattataataataaatcaacaataatttatac 10941036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 24 - 113
Target Start/End: Original strand, 10946815 - 10946905
Alignment:
Q  24 tgttcttcaaataattaatcatgataaaggacaacaaaagtaatcccaaaacaattgtatattat-ataatagatcaacaataatttatac 113  Q
    ||||||| |||||||||| |||||||| ||||||||||| |||||||||||||||| || ||||| |||||| ||||||||||||||||||    
T  10946815 tgttcttaaaataattaagcatgataagggacaacaaaaataatcccaaaacaattctacattataataataaatcaacaataatttatac 10946905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 262 - 316
Target Start/End: Original strand, 13437548 - 13437602
Alignment:
Q  262 tataaatagaagcatcaataaaatatagctaaaagagagaacaataaacttatct 316  Q
    |||||||| ||| ||||||||||||||   |||||||||| ||||||||||||||    
T  13437548 tataaataaaagaatcaataaaatataaacaaaagagagatcaataaacttatct 13437602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 62; Significance: 9e-27; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 250 - 319
Target Start/End: Original strand, 1788745 - 1788814
Alignment:
Q  250 ataatcatcatatataaatagaagcatcaataaaatatagctaaaagagagaacaataaacttatctgtg 319  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||    
T  1788745 ataatcatcatatataaatagaagcatcaataaaatatatctaaaagggagaacaataaacttatctgtg 1788814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 214 - 299
Target Start/End: Original strand, 26118 - 26203
Alignment:
Q  214 tgttgtataatttgtcataagaattatccaaagatcataatcatcatatataaatagaagcatcaataaaatatagctaaaagaga 299  Q
    ||||||||||||  |||||||||| ||| | | || ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26118 tgttgtataattaatcataagaatcatctacaaataataatcatcatatataaatagaagcatcaataaaatatagctaaaagaga 26203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0933 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: scaffold0933
Description:

Target: scaffold0933; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 250 - 316
Target Start/End: Complemental strand, 1031 - 965
Alignment:
Q  250 ataatcatcatatataaatagaagcatcaataaaatatagctaaaagagagaacaataaacttatct 316  Q
    ||||||| |||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||    
T  1031 ataatcaacatatataaatataagcatcaataaaatataggtaaaagagagaacaataaacttatct 965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 55; Significance: 1e-22; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 24 - 113
Target Start/End: Original strand, 49390428 - 49390518
Alignment:
Q  24 tgttcttcaaataattaatcatgataaaggacaacaaaagtaatcccaaaacaattgtatattat-ataatagatcaacaataatttatac 113  Q
    ||||||| |||||||||| |||||||| ||||||||||| |||||||||||||||| || ||||| |||||| ||||||||||||||||||    
T  49390428 tgttcttaaaataattaagcatgataagggacaacaaaaataatcccaaaacaattctacattataataataaatcaacaataatttatac 49390518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 250 - 318
Target Start/End: Original strand, 38825322 - 38825390
Alignment:
Q  250 ataatcatcatatataaatagaagcatcaataaaatatagctaaaagagagaacaataaacttatctgt 318  Q
    ||||||| |||||||||||| |||||||||||||| |||| ||||||||||||||||||| ||||||||    
T  38825322 ataatcaacatatataaatataagcatcaataaaacataggtaaaagagagaacaataaatttatctgt 38825390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 250 - 318
Target Start/End: Original strand, 38828534 - 38828600
Alignment:
Q  250 ataatcatcatatataaatagaagcatcaataaaatatagctaaaagagagaacaataaacttatctgt 318  Q
    ||||||| | |||||||||| ||||||||||||||||||| ||||  ||||||||||||||||||||||    
T  38828534 ataatcaacttatataaatataagcatcaataaaatataggtaaa--agagaacaataaacttatctgt 38828600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 250 - 316
Target Start/End: Original strand, 49873036 - 49873103
Alignment:
Q  250 ataatcatcatatataaatagaagcatcaataaaatatagct-aaaagagagaacaataaacttatct 316  Q
    |||||||  ||||||||||| ||| ||||||||||||||  | |||||||||| ||||||||||||||    
T  49873036 ataatcaaaatatataaataaaagaatcaataaaatataaatgaaaagagagatcaataaacttatct 49873103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 47; Significance: 8e-18; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 24 - 113
Target Start/End: Original strand, 24044446 - 24044536
Alignment:
Q  24 tgttcttcaaataattaatcatgataaaggacaacaaaagtaatcccaaaacaattgtatattat-ataatagatcaacaataatttatac 113  Q
    ||||||| |||||||||| |||||||  ||||||||||| ||||||||||||| || || ||||| |||||| ||||||||||||||||||    
T  24044446 tgttcttaaaataattaagcatgataggggacaacaaaaataatcccaaaacacttctacattataataataaatcaacaataatttatac 24044536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 8e-18; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 228 - 314
Target Start/End: Original strand, 31307220 - 31307306
Alignment:
Q  228 tcataagaattatccaaagatcataatcatcatatataaatagaagcatcaataaaatatagctaaaagagagaacaataaacttat 314  Q
    ||||||||||||||   | || ||||||| |||||||||||| |||||| |||||||||||| ||||||| ||||||||||||||||    
T  31307220 tcataagaattatctccaaataataatcaacatatataaatataagcataaataaaatataggtaaaagaaagaacaataaacttat 31307306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University