View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2695_low_14 (Length: 311)
Name: NF2695_low_14
Description: NF2695
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2695_low_14 |
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| [»] scaffold0268 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 294
Target Start/End: Original strand, 41520906 - 41521199
Alignment:
| Q |
1 |
aattcatcagcttcacccctccttaatgattccaatttttcagtgttattttcaaccatttccatggttttgtgtatatattcaggatctccacacttca |
100 |
Q |
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||||||||| |||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41520906 |
aattcatcaacttcacccctgcttaatgattccaatttttcagtgtgattttcaaccatttccatggttttgtgtatatattcaggatctccacacttca |
41521005 |
T |
|
| Q |
101 |
acacggcattggtcatcctcttacaacgctccacaaacatcacatacatagatagaaatgcaggatcacggtgacttgaactattacgattttcagcttt |
200 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||| ||| || ||||||||||||||||||||||||||||||||||||||| || || |
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| T |
41521006 |
acacggcattggccatcctcttacaacgctccacaaacatcacatacgtagttacaaatgcaggatcacggtgacttgaactattacgattttcggcatt |
41521105 |
T |
|
| Q |
201 |
gattccatctttagcacgtttggtccattgttcaatcacaagacattttggcatttcaacaatgttcaaatacactagaacacgtaagatatgt |
294 |
Q |
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|||| |||||||||||||||| |||| |||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41521106 |
tattcaatctttagcacgtttgacccatcgttccatcacaagaccttttggcatttcaacaatgttcaaatacactagaacacgtaagatatgt |
41521199 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 206; Significance: 1e-112; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 1 - 294
Target Start/End: Original strand, 27049432 - 27049725
Alignment:
| Q |
1 |
aattcatcagcttcacccctccttaatgattccaatttttcagtgttattttcaaccatttccatggttttgtgtatatattcaggatctccacacttca |
100 |
Q |
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||||||||| |||||||||| ||||||||||||||||||||||||| | |||||||||||||||||||||| |||||||||||| ||||||||||||||| |
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| T |
27049432 |
aattcatcaacttcacccctgcttaatgattccaatttttcagtgtcactttcaaccatttccatggttttatgtatatattcaagatctccacacttca |
27049531 |
T |
|
| Q |
101 |
acacggcattggtcatcctcttacaacgctccacaaacatcacatacatagatagaaatgcaggatcacggtgacttgaactattacgattttcagcttt |
200 |
Q |
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|||| ||||| |||||||||||||||||||||||||||||||||| ||| || |||||||||||||| |||||||||||||||||| ||||| || || |
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| T |
27049532 |
acaccgcattttccatcctcttacaacgctccacaaacatcacatacgtagttacaaatgcaggatcacagtgacttgaactattacggttttcggcatt |
27049631 |
T |
|
| Q |
201 |
gattccatctttagcacgtttggtccattgttcaatcacaagacattttggcatttcaacaatgttcaaatacactagaacacgtaagatatgt |
294 |
Q |
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|||||||||||||||||||||||||| | |||| |||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
27049632 |
gattccatctttagcacgtttggtccttcgttccatcaaaagacattttggcatttcaacaatgttcaaatacactagaacacataagatatgt |
27049725 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 98; Significance: 3e-48; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 4 - 233
Target Start/End: Original strand, 22276273 - 22276502
Alignment:
| Q |
4 |
tcatcagcttcacccctccttaatgattccaatttttcagtgttattttcaaccatttccatggttttgtgtatatattcaggatctccacacttcaaca |
103 |
Q |
| |
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|||||| |||||||||| | ||||||||||||| ||||||| | |||||||||||||||||||||||||||||| | |||| |||||||| |||| |
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| T |
22276273 |
tcatcaacttcacccctgttgtatgattccaatttctcagtgtgttgttcaaccatttccatggttttgtgtatatagtttggattgccacactttaaca |
22276372 |
T |
|
| Q |
104 |
cggcattggtcatcctcttacaacgctccacaaacatcacatacatagatagaaatgcaggatcacggtgacttgaactattacgattttcagctttgat |
203 |
Q |
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| || || | ||||||||| |||||||||| |||||| |||||| ||| || |||||||||||| |||||| |||||||||||| |||||| || ||||| |
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| T |
22276373 |
ctgcgtttgccatcctcttgcaacgctccagaaacataacatacgtagttacaaatgcaggatcccggtgagttgaactattaccattttcggcattgat |
22276472 |
T |
|
| Q |
204 |
tccatctttagcacgtttggtccattgttc |
233 |
Q |
| |
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| |||||||||||||| |||||||| |||| |
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| T |
22276473 |
tacatctttagcacgtctggtccatcgttc |
22276502 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0268 (Bit Score: 96; Significance: 4e-47; HSPs: 1)
Name: scaffold0268
Description:
Target: scaffold0268; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 26 - 233
Target Start/End: Original strand, 13945 - 14152
Alignment:
| Q |
26 |
atgattccaatttttcagtgttattttcaaccatttccatggttttgtgtatatattcaggatctccacacttcaacacggcattggtcatcctcttaca |
125 |
Q |
| |
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||||||||||| | ||||||| | |||||||||||||||||||||||||||||| | |||| |||||||| ||||| || || | ||||||||| || |
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| T |
13945 |
atgattccaatatctcagtgtgttgttcaaccatttccatggttttgtgtatatagtttggattgccacactttaacactgcgtttgccatcctcttgca |
14044 |
T |
|
| Q |
126 |
acgctccacaaacatcacatacatagatagaaatgcaggatcacggtgacttgaactattacgattttcagctttgattccatctttagcacgtttggtc |
225 |
Q |
| |
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|||||||| |||||| |||||| ||| || |||||||||||| |||||| |||||||||||| |||||| || |||||| |||||||||||||||||||| |
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| T |
14045 |
acgctccagaaacataacatacgtagttacaaatgcaggatcccggtgagttgaactattaccattttcggcattgattacatctttagcacgtttggtc |
14144 |
T |
|
| Q |
226 |
cattgttc |
233 |
Q |
| |
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||| |||| |
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| T |
14145 |
catcgttc |
14152 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 94; Significance: 7e-46; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 4 - 233
Target Start/End: Complemental strand, 7659346 - 7659117
Alignment:
| Q |
4 |
tcatcagcttcacccctccttaatgattccaatttttcagtgttattttcaaccatttccatggttttgtgtatatattcaggatctccacacttcaaca |
103 |
Q |
| |
|
|||||| |||||||| | | |||||||||||| | ||||||| |||||||||||||||| ||||||||||||||| || |||| |||||||| |||| |
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| T |
7659346 |
tcatcaacttcacccatgttgaatgattccaatgtctcagtgtgtttttcaaccatttccacggttttgtgtatataatctggattaccacactttaaca |
7659247 |
T |
|
| Q |
104 |
cggcattggtcatcctcttacaacgctccacaaacatcacatacatagatagaaatgcaggatcacggtgacttgaactattacgattttcagctttgat |
203 |
Q |
| |
|
|||| | | ||||||||||||||||||||||||||| |||||| ||| || ||| ||||||| |||||||||||||||||| ||||| || ||||| |
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|
| T |
7659246 |
cggcggttgccatcctcttacaacgctccacaaacataacatacgtagttacaaaaccaggatcccggtgacttgaactattagaattttgggcattgat |
7659147 |
T |
|
| Q |
204 |
tccatctttagcacgtttggtccattgttc |
233 |
Q |
| |
|
| ||||||||||||||||| ||||| |||| |
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| T |
7659146 |
tacatctttagcacgtttgatccatcgttc |
7659117 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 4 - 233
Target Start/End: Complemental strand, 24028753 - 24028524
Alignment:
| Q |
4 |
tcatcagcttcacccctccttaatgattccaatttttcagtgttattttcaaccatttccatggttttgtgtatatattcaggatctccacacttcaaca |
103 |
Q |
| |
|
|||||| |||||||||| | ||||||||||||| ||||||| | |||||||||||||||||||||||||||||| | |||| |||||||| |||| |
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| T |
24028753 |
tcatcaacttcacccctgttgtatgattccaatttatcagtgtgttgttcaaccatttccatggttttgtgtatatagtttggattgccacactttaaca |
24028654 |
T |
|
| Q |
104 |
cggcattggtcatcctcttacaacgctccacaaacatcacatacatagatagaaatgcaggatcacggtgacttgaactattacgattttcagctttgat |
203 |
Q |
| |
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| ||||| | ||||||||| |||||||| | |||||| |||||| ||| || |||||| ||||| |||||| |||||||||||| |||||| || ||||| |
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| T |
24028653 |
ctgcatttgccatcctcttgcaacgctctagaaacataacatacgtagttacaaatgctggatcccggtgagttgaactattaccattttcggcattgat |
24028554 |
T |
|
| Q |
204 |
tccatctttagcacgtttggtccattgttc |
233 |
Q |
| |
|
| |||||||||||||| |||||||| |||| |
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| T |
24028553 |
tacatctttagcacgtctggtccatcgttc |
24028524 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 25 - 233
Target Start/End: Original strand, 7670121 - 7670329
Alignment:
| Q |
25 |
aatgattccaatttttcagtgttattttcaaccatttccatggttttgtgtatatattcaggatctccacacttcaacacggcattggtcatcctcttac |
124 |
Q |
| |
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|||||||||||| | || |||| |||||||| |||| |||||||||||||||||| || |||| ||||| || |||| || || | | ||||||||| |
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| T |
7670121 |
aatgattccaatgtctcggtgtgtttttcaacaattttcatggttttgtgtatataatctggattgccacattttaacatggtgtttgccctcctcttac |
7670220 |
T |
|
| Q |
125 |
aacgctccacaaacatcacatacatagatagaaatgcaggatcacggtgacttgaactattacgattttcagctttgattccatctttagcacgtttggt |
224 |
Q |
| |
|
|||||||||||||||| |||||| ||| || ||| ||||||| || ||||||||||||||| ||||| || |||||| ||||||||||||||||||| |
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| T |
7670221 |
aacgctccacaaacataacatacgtagttaaaaaaccaggatcccgatgacttgaactattagcattttgggcattgattacatctttagcacgtttggt |
7670320 |
T |
|
| Q |
225 |
ccattgttc |
233 |
Q |
| |
|
|||| |||| |
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|
| T |
7670321 |
ccatcgttc |
7670329 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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