View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2695_low_19 (Length: 247)
Name: NF2695_low_19
Description: NF2695
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2695_low_19 |
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Alignment Details
Target: chr1 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 10 - 231
Target Start/End: Original strand, 47884723 - 47884944
Alignment:
| Q |
10 |
gcatagggaggaatgaatgttgctaggcttaatatgtgtcatggtactagagaatggcaccgtgatgttattaggaagattaagaagcttaatgaggaaa |
109 |
Q |
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| T |
47884723 |
gcattgggaggaatgaatgttgctaggcttaatatgtgtcatggtactagagaatggcaccgtgatgttattaggaagattaagaagcttaatgaggaaa |
47884822 |
T |
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| Q |
110 |
agggtttctctgtttctgttatgattgatactgaaggtagtcagattcatgttgttgatcatggagctccttcctcggttaaagttgaggtaatgatctt |
209 |
Q |
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| T |
47884823 |
agggtttctctgtttctgttatgattgatactgaaggtagtcagattcatgttgttgatcatggagcaccttcctcggttaaagttgaggtaatgatctt |
47884922 |
T |
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| Q |
210 |
acttataattaacatatgttag |
231 |
Q |
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| T |
47884923 |
acttataattagcatatgttag |
47884944 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 82 - 176
Target Start/End: Original strand, 47880840 - 47880934
Alignment:
| Q |
82 |
aggaagattaagaagcttaatgaggaaaagggtttctctgtttctgttatgattgatactgaaggtagtcagattcatgttgttgatcatggagc |
176 |
Q |
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||||||||||||||||| ||||||||||| ||||| |||| || || ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47880840 |
aggaagattaagaagctgaatgaggaaaatggtttatctggtttggtcatgattgatactgaaggtagtcagattcatgttgttgatcatggagc |
47880934 |
T |
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