View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2695_low_21 (Length: 227)
Name: NF2695_low_21
Description: NF2695
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2695_low_21 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 175; Significance: 2e-94; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 43998562 - 43998336
Alignment:
| Q |
1 |
tttgagacgtgttgttggtgatccatttaagaagggtgtagagcaaggtcctcaggtatttttatattaagttaactttattactattgtaacgttacct |
100 |
Q |
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| T |
43998562 |
tttgagacgtgttgttggtgatccatttaagaagggtgtagagcaaggtcctcaggtatttttatattaagttaactttattactattgtaacgttactt |
43998463 |
T |
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| Q |
101 |
tataggtctatattccttgtctcannnnnnnnnnnnnnnnctagtgtttattcgactaaccttttcatgggaaaaagctaatgtttgacagaacaacaca |
200 |
Q |
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| T |
43998462 |
tataggtctatattccttgtctcatttttctttttcttttctagtgtttattcgactaaccttttcatgggaaaaagctaatgtttgacagaacaacaca |
43998363 |
T |
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| Q |
201 |
ttcttgatcatactatgatttaacaac |
227 |
Q |
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| T |
43998362 |
ttcttgatcatactatgatttaacaac |
43998336 |
T |
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Target: chr3 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 35210855 - 35210798
Alignment:
| Q |
1 |
tttgagacgtgttgttggtgatccatttaagaagggtgtagagcaaggtcctcaggta |
58 |
Q |
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|||||||||||||||||| |||||||| ||||| |||||||| ||||||||||||||| |
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| T |
35210855 |
tttgagacgtgttgttggcgatccattcaagaaaggtgtagaacaaggtcctcaggta |
35210798 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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