View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2695_low_3 (Length: 589)

Name: NF2695_low_3
Description: NF2695
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2695_low_3
NF2695_low_3
[»] chr7 (4 HSPs)
chr7 (29-307)||(39303776-39304054)
chr7 (345-576)||(39304095-39304327)
chr7 (219-303)||(23259704-23259788)
chr7 (234-307)||(23259935-23260008)
[»] chr5 (3 HSPs)
chr5 (215-304)||(12903190-12903279)
chr5 (219-303)||(26591315-26591399)
chr5 (219-303)||(26599436-26599520)
[»] chr3 (5 HSPs)
chr3 (217-303)||(33801029-33801115)
chr3 (219-304)||(39916474-39916559)
chr3 (209-304)||(39624634-39624728)
chr3 (219-304)||(39919009-39919094)
chr3 (219-281)||(26662908-26662970)
[»] chr1 (3 HSPs)
chr1 (219-304)||(10450663-10450748)
chr1 (219-303)||(7147394-7147478)
chr1 (219-303)||(31412166-31412249)
[»] scaffold0856 (1 HSPs)
scaffold0856 (215-303)||(2601-2689)
[»] chr8 (7 HSPs)
chr8 (209-304)||(9944204-9944299)
chr8 (219-303)||(37694997-37695081)
chr8 (219-303)||(37699520-37699604)
chr8 (219-303)||(37683114-37683198)
chr8 (219-304)||(34580865-34580949)
chr8 (219-304)||(39570784-39570868)
chr8 (219-297)||(34578125-34578202)


Alignment Details
Target: chr7 (Bit Score: 259; Significance: 1e-144; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 29 - 307
Target Start/End: Original strand, 39303776 - 39304054
Alignment:
Q  29 tcattatacaaagcctgttgttcatttactcagattatgcaaagccaagtcataagatattagaaatttattttgaaataattacgtctgtgcatatgat 128  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39303776 tcattatacaaagcctgttgttcatttactcagattatgaaaagccaagtcataagatattagaaatttattttgaaataattacgtctgtgcatatgat 39303875  T
Q  129 gcatgcattaattatttgtcaatttttctattaatcgttcactatttatttctatataaatttagaatagctacgaaattaaacatcaacggggtggtgg 228  Q
    |||||||||||||||||||||||||||| |||||||||||||||||| || |||||||||||||||||||||||| ||||||||||||||||||||||||    
T  39303876 gcatgcattaattatttgtcaatttttccattaatcgttcactatttcttgctatataaatttagaatagctacggaattaaacatcaacggggtggtgg 39303975  T
Q  229 cgcagttggctagcgcgtaggtctcatagcttctgagtaatcctgaggtcgagagttcgagcctctctcaccccaaaca 307  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39303976 cgcagttggctagcgcgtaggtctcatagcttctgagtaatcctgaggtcgagagttcgagcctctctcaccccaaaca 39304054  T

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Target: chr7; HSP #2
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 345 - 576
Target Start/End: Original strand, 39304095 - 39304327
Alignment:
Q  345 gactaagatgcagcaatttaaattagctcgnnnnnnn-gttgatgcaaatatgacatgatcattttaattattcnnnnnnntaacaagaccgttttacat 443  Q
    ||||||||||||||||||||||||||||||        |||||||||||||||| |||||||||||||||||||       |||||||||| ||||||||    
T  39304095 gactaagatgcagcaatttaaattagctcgttttttttgttgatgcaaatatgatatgatcattttaattattcaacaaaataacaagaccattttacat 39304194  T
Q  444 ttctttcgtgttatatgcatacattaattttgactctcttgtgtcaccgaaacctgactcacctaaaccttaatcttcaaaagaaaatattaaaagtaaa 543  Q
    |||||||||||||||||||| ||||||||||||||||||| ||||| ||||||||||||||| |||| ||||||||||||||||||||||||||||||||    
T  39304195 ttctttcgtgttatatgcatgcattaattttgactctcttatgtcatcgaaacctgactcacgtaaatcttaatcttcaaaagaaaatattaaaagtaaa 39304294  T
Q  544 tccgttcatttacaattattctttatttggttc 576  Q
     ||||||||||||||||||| ||||||||||||    
T  39304295 cccgttcatttacaattattttttatttggttc 39304327  T

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Target: chr7; HSP #3
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 219 - 303
Target Start/End: Original strand, 23259704 - 23259788
Alignment:
Q  219 ggggtggtggcgcagttggctagcgcgtaggtctcatagcttctgagtaatcctgaggtcgagagttcgagcctctctcacccca 303  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23259704 ggggtggtggcgcagttggctagcgcgtaggtctcatagcttctgagtaatcctgaggtcgagagttcgagcctctctcacccca 23259788  T

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Target: chr7; HSP #4
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 234 - 307
Target Start/End: Original strand, 23259935 - 23260008
Alignment:
Q  234 ttggctagcgcgtaggtctcatagcttctgagtaatcctgaggtcgagagttcgagcctctctcaccccaaaca 307  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||    
T  23259935 ttggctagcgcgtaggtctcatagcttctgagtaatcctgtggtcgagagttcgagcctctctcacccccaaca 23260008  T

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Target: chr5 (Bit Score: 90; Significance: 3e-43; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 215 - 304
Target Start/End: Original strand, 12903190 - 12903279
Alignment:
Q  215 caacggggtggtggcgcagttggctagcgcgtaggtctcatagcttctgagtaatcctgaggtcgagagttcgagcctctctcaccccaa 304  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12903190 caacggggtggtggcgcagttggctagcgcgtaggtctcatagcttctgagtaatcctgaggtcgagagttcgagcctctctcaccccaa 12903279  T

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Target: chr5; HSP #2
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 219 - 303
Target Start/End: Original strand, 26591315 - 26591399
Alignment:
Q  219 ggggtggtggcgcagttggctagcgcgtaggtctcatagcttctgagtaatcctgaggtcgagagttcgagcctctctcacccca 303  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26591315 ggggtggtggcgcagttggctagcgcgtaggtctcatagcttctgagtaatcctgaggtcgagagttcgagcctctctcacccca 26591399  T

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Target: chr5; HSP #3
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 219 - 303
Target Start/End: Complemental strand, 26599520 - 26599436
Alignment:
Q  219 ggggtggtggcgcagttggctagcgcgtaggtctcatagcttctgagtaatcctgaggtcgagagttcgagcctctctcacccca 303  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26599520 ggggtggtggcgcagttggctagcgcgtaggtctcatagcttctgagtaatcctgaggtcgagagttcgagcctctctcacccca 26599436  T

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Target: chr3 (Bit Score: 87; Significance: 2e-41; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 217 - 303
Target Start/End: Complemental strand, 33801115 - 33801029
Alignment:
Q  217 acggggtggtggcgcagttggctagcgcgtaggtctcatagcttctgagtaatcctgaggtcgagagttcgagcctctctcacccca 303  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33801115 acggggtggtggcgcagttggctagcgcgtaggtctcatagcttctgagtaatcctgaggtcgagagttcgagcctctctcacccca 33801029  T

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Target: chr3; HSP #2
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 219 - 304
Target Start/End: Complemental strand, 39916559 - 39916474
Alignment:
Q  219 ggggtggtggcgcagttggctagcgcgtaggtctcatagcttctgagtaatcctgaggtcgagagttcgagcctctctcaccccaa 304  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39916559 ggggtggtggcgcagttggctagcgcgtaggtctcatagcttctgagtaatcctgaggtcgagagttcgagcctctctcaccccaa 39916474  T

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Target: chr3; HSP #3
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 209 - 304
Target Start/End: Complemental strand, 39624728 - 39624634
Alignment:
Q  209 aaacatcaacggggtggtggcgcagttggctagcgcgtaggtctcatagcttctgagtaatcctgaggtcgagagttcgagcctctctcaccccaa 304  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  39624728 aaacatcaa-ggggtggtggcgcagttggctagcgcgtaggtctcatagctgctgagtaatcctgaggtcgagagttcgagcctctctcaccccaa 39624634  T

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Target: chr3; HSP #4
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 219 - 304
Target Start/End: Complemental strand, 39919094 - 39919009
Alignment:
Q  219 ggggtggtggcgcagttggctagcgcgtaggtctcatagcttctgagtaatcctgaggtcgagagttcgagcctctctcaccccaa 304  Q
    |||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  39919094 ggggtggtggcgcagttggccagtgcgtaggtctcatagcttctgagtaatcctgaggtcgagagtttgagcctctctcaccccaa 39919009  T

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Target: chr3; HSP #5
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 219 - 281
Target Start/End: Original strand, 26662908 - 26662970
Alignment:
Q  219 ggggtggtggcgcagttggctagcgcgtaggtctcatagcttctgagtaatcctgaggtcgag 281  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||    
T  26662908 ggggtggtggcgcagttggctagcgcgtaggtctcatagctactgagtgatcctgaggtcgag 26662970  T

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Target: chr1 (Bit Score: 86; Significance: 8e-41; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 219 - 304
Target Start/End: Original strand, 10450663 - 10450748
Alignment:
Q  219 ggggtggtggcgcagttggctagcgcgtaggtctcatagcttctgagtaatcctgaggtcgagagttcgagcctctctcaccccaa 304  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10450663 ggggtggtggcgcagttggctagcgcgtaggtctcatagcttctgagtaatcctgaggtcgagagttcgagcctctctcaccccaa 10450748  T

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Target: chr1; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 219 - 303
Target Start/End: Complemental strand, 7147478 - 7147394
Alignment:
Q  219 ggggtggtggcgcagttggctagcgcgtaggtctcatagcttctgagtaatcctgaggtcgagagttcgagcctctctcacccca 303  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||    
T  7147478 ggggtggtggcgcagttggctagcgcgtaggtctcatagctactgagtgatcctgaggtcgagagttcgagcctctctcacccca 7147394  T

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Target: chr1; HSP #3
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 219 - 303
Target Start/End: Complemental strand, 31412249 - 31412166
Alignment:
Q  219 ggggtggtggcgcagttggctagcgcgtaggtctcatagcttctgagtaatcctgaggtcgagagttcgagcctctctcacccca 303  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||    
T  31412249 ggggtggtggcgcagttggctagcgcgtaggtctcatagcttct-agtaatcctgaggtcgagagtttgagcctctctcacccca 31412166  T

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Target: scaffold0856 (Bit Score: 85; Significance: 3e-40; HSPs: 1)
Name: scaffold0856
Description:

Target: scaffold0856; HSP #1
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 215 - 303
Target Start/End: Complemental strand, 2689 - 2601
Alignment:
Q  215 caacggggtggtggcgcagttggctagcgcgtaggtctcatagcttctgagtaatcctgaggtcgagagttcgagcctctctcacccca 303  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  2689 caacggggtggtggcgcagttggctagcgcgtaggtctcatagcttctgagttatcctgaggtcgagagttcgagcctctctcacccca 2601  T

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Target: chr8 (Bit Score: 84; Significance: 1e-39; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 209 - 304
Target Start/End: Complemental strand, 9944299 - 9944204
Alignment:
Q  209 aaacatcaacggggtggtggcgcagttggctagcgcgtaggtctcatagcttctgagtaatcctgaggtcgagagttcgagcctctctcaccccaa 304  Q
    ||||||||  |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  9944299 aaacatcattggggtggtggcgcagttggctagcgcgtaggtctcatagcttctgagtgatcctgaggtcgagagttcgagcctctctcaccccaa 9944204  T

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Target: chr8; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 219 - 303
Target Start/End: Original strand, 37694997 - 37695081
Alignment:
Q  219 ggggtggtggcgcagttggctagcgcgtaggtctcatagcttctgagtaatcctgaggtcgagagttcgagcctctctcacccca 303  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  37694997 ggggtgatggcgcagttggctagcgcgtaggtctcatagcttctgagtgatcctgaggtcgagagttcgagcctctctcacccca 37695081  T

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Target: chr8; HSP #3
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 219 - 303
Target Start/End: Original strand, 37699520 - 37699604
Alignment:
Q  219 ggggtggtggcgcagttggctagcgcgtaggtctcatagcttctgagtaatcctgaggtcgagagttcgagcctctctcacccca 303  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||| |||||||||||||||||    
T  37699520 ggggtggtggcgcagttggctagcgcgtaggtctcatagctactgagtgatcctgaggtcgagagtttgagcctctctcacccca 37699604  T

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Target: chr8; HSP #4
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 219 - 303
Target Start/End: Original strand, 37683114 - 37683198
Alignment:
Q  219 ggggtggtggcgcagttggctagcgcgtaggtctcatagcttctgagtaatcctgaggtcgagagttcgagcctctctcacccca 303  Q
    |||||||||| |||||||||||||||||||||||||||||| |||||| ||||||||||||||||||| ||||||||||||||||    
T  37683114 ggggtggtggtgcagttggctagcgcgtaggtctcatagctactgagtgatcctgaggtcgagagttcaagcctctctcacccca 37683198  T

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Target: chr8; HSP #5
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 219 - 304
Target Start/End: Complemental strand, 34580949 - 34580865
Alignment:
Q  219 ggggtggtggcgcagttggctagcgcgtaggtctcatagcttctgagtaatcctgaggtcgagagttcgagcctctctcaccccaa 304  Q
    |||||||||||||||||||||||||||||||||||||||| |  |||| |||||||||||||||||||||||||||||||||||||    
T  34580949 ggggtggtggcgcagttggctagcgcgtaggtctcatagc-taagagttatcctgaggtcgagagttcgagcctctctcaccccaa 34580865  T

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Target: chr8; HSP #6
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 219 - 304
Target Start/End: Original strand, 39570784 - 39570868
Alignment:
Q  219 ggggtggtggcgcagttggctagcgcgtaggtctcatagcttctgagtaatcctgaggtcgagagttcgagcctctctcaccccaa 304  Q
    |||||||||||||||||||||||||||||||||||||||| |  |||| |||||||||||||||||||||||||||||||||||||    
T  39570784 ggggtggtggcgcagttggctagcgcgtaggtctcatagc-taagagttatcctgaggtcgagagttcgagcctctctcaccccaa 39570868  T

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Target: chr8; HSP #7
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 219 - 297
Target Start/End: Complemental strand, 34578202 - 34578125
Alignment:
Q  219 ggggtggtggcgcagttggctagcgcgtaggtctcatagcttctgagtaatcctgaggtcgagagttcgagcctctctc 297  Q
    ||||||||||||||||||||||| | |||||||||||||| |  |||| ||||||||||||||||||||||||||||||    
T  34578202 ggggtggtggcgcagttggctagtgtgtaggtctcatagc-taagagttatcctgaggtcgagagttcgagcctctctc 34578125  T

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