View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2695_low_4 (Length: 546)

Name: NF2695_low_4
Description: NF2695
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2695_low_4
NF2695_low_4
[»] chr3 (2 HSPs)
chr3 (278-528)||(32772355-32772602)
chr3 (1-247)||(32772804-32773049)
[»] chr4 (5 HSPs)
chr4 (92-230)||(50111384-50111522)
chr4 (127-230)||(50112859-50112962)
chr4 (90-169)||(50111277-50111356)
chr4 (394-475)||(29409372-29409453)
chr4 (125-193)||(23669906-23669974)
[»] scaffold0015 (5 HSPs)
scaffold0015 (89-194)||(207922-208027)
scaffold0015 (90-220)||(208064-208190)
scaffold0015 (90-194)||(208512-208616)
scaffold0015 (97-220)||(208228-208347)
scaffold0015 (93-194)||(208348-208449)
[»] chr8 (11 HSPs)
chr8 (89-194)||(21961710-21961815)
chr8 (90-231)||(22011957-22012094)
chr8 (90-220)||(21961547-21961673)
chr8 (90-194)||(21961121-21961225)
chr8 (97-220)||(21961390-21961509)
chr8 (93-194)||(21961288-21961389)
chr8 (90-186)||(21960793-21960889)
chr8 (90-186)||(21960957-21961053)
chr8 (120-194)||(22013361-22013435)
chr8 (122-193)||(19735339-19735410)
chr8 (90-125)||(22012121-22012156)
[»] chr2 (3 HSPs)
chr2 (90-194)||(21503020-21503124)
chr2 (112-226)||(21502878-21502988)
chr2 (394-442)||(41622444-41622492)
[»] chr1 (4 HSPs)
chr1 (90-194)||(52071044-52071148)
chr1 (141-194)||(2363421-2363474)
chr1 (101-164)||(2363726-2363789)
chr1 (123-169)||(2363888-2363934)
[»] scaffold0314 (2 HSPs)
scaffold0314 (90-194)||(19664-19768)
scaffold0314 (149-231)||(19462-19540)
[»] chr5 (1 HSPs)
chr5 (102-230)||(17424477-17424601)
[»] chr6 (11 HSPs)
chr6 (89-231)||(29907856-29907994)
chr6 (89-194)||(29906110-29906215)
chr6 (89-194)||(30118165-30118270)
chr6 (89-193)||(30120834-30120938)
chr6 (89-192)||(29906613-29906716)
chr6 (89-192)||(30117664-30117767)
chr6 (89-194)||(29907721-29907827)
chr6 (143-231)||(29906410-29906494)
chr6 (143-231)||(30117886-30117970)
chr6 (141-231)||(29906244-29906330)
chr6 (141-231)||(30118050-30118136)
[»] scaffold0168 (1 HSPs)
scaffold0168 (148-189)||(10022-10063)


Alignment Details
Target: chr3 (Bit Score: 225; Significance: 1e-124; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 278 - 528
Target Start/End: Complemental strand, 32772602 - 32772355
Alignment:
Q  278 tttacaaaatcaactttttaaaaaattgaatttaaaactacattactatttacactattatttacaacaatttctttcctcttttacacatcattcctcc 377  Q
    |||| ||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32772602 tttataaaatcaacctttaaaaaaattgaatttaaaactacattactatttacactattatttacaacaatttctttcctcttttacacatcattcctcc 32772503  T
Q  378 tcctcctcctttcggattaattattagatcaagtgacacaagtccattttcactaaccaatttgtccactctactttgaggacttagctttttctctaat 477  Q
    |||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32772502 tcctcct---ttcggattaattattagatcaagtgacacaagtccattttcactaaccaatttgtccactctactttgaggacttagctttttctctaat 32772406  T
Q  478 tatactataacagcctgcaatatgtctgaattggtacaagcagtttcactt 528  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32772405 tatactataacagcctgcaatatgtctgaattggtacaagcagtttcactt 32772355  T

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Target: chr3; HSP #2
Raw Score: 175; E-Value: 6e-94
Query Start/End: Original strand, 1 - 247
Target Start/End: Complemental strand, 32773049 - 32772804
Alignment:
Q  1 cacagtgtgtccatggtcgaaagcttaaacatggaaatttggtacaagatgaaataagttgatgatgaggagacacaaattcaggagaatagcttggttt 100  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||    
T  32773049 cacagtgtgtccatggtcgaaagcttaaacatggaaatttgatacaagatgaaataagttgatgatgaggaggcacaaattcaggagaatagtttggttt 32772950  T
Q  101 gtaagctaaatcttactaaatttaatttgattagtctgatagtcaaagtatgatgattatagatcaaatgaacaagtaaattgactaaaataataaacgt 200  Q
    ||||| ||| ||||| ||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||| |||||||| ||||||||| || ||    
T  32772949 gtaagttaagtcttattaaatttaatttgatcagtctgatagtcaaagtatgatgattataaatcaaatgaacaaataaattgattaaaataatgaatgt 32772850  T
Q  201 ttatatcaaattttcatcctgaaagacgaaacgatagtgataaaccc 247  Q
    ||||||| ||||||||||||  ||||| |||||||||| ||||||||    
T  32772849 ttatatcgaattttcatcctagaagacaaaacgatagt-ataaaccc 32772804  T

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Target: chr4 (Bit Score: 119; Significance: 1e-60; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 92 - 230
Target Start/End: Complemental strand, 50111522 - 50111384
Alignment:
Q  92 gcttggtttgtaagctaaatcttactaaatttaatttgattagtctgatagtcaaagtatgatgattatagatcaaatgaacaagtaaattgactaaaat 191  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  50111522 gcttggtttgtaagctaaatcttactaaatttaatttgattagtctgatagttaaagtatgatgattatagatcaaatgaacaagtaaattgactaaaat 50111423  T
Q  192 aataaacgtttatatcaaattttcatcctgaaagacgaa 230  Q
    ||| || ||||||||| | ||||||||||||||||||||    
T  50111422 aatgaatgtttatatcgagttttcatcctgaaagacgaa 50111384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 127 - 230
Target Start/End: Complemental strand, 50112962 - 50112859
Alignment:
Q  127 ttgattagtctgatagtcaaagtatgatgattatagatcaaatgaacaagtaaattgactaaaataataaacgtttatatcaaattttcatcctgaaaga 226  Q
    |||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| || ||||||||| | ||||||||||| ||||    
T  50112962 ttgattagtctgatcgtcaaagtatgatgattatagattaaatgaacaagtaaattgactaaaataatgaatgtttatatcgagttttcatcctggaaga 50112863  T
Q  227 cgaa 230  Q
    ||||    
T  50112862 cgaa 50112859  T

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Target: chr4; HSP #3
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 90 - 169
Target Start/End: Complemental strand, 50111356 - 50111277
Alignment:
Q  90 tagcttggtttgtaagctaaatcttactaaatttaatttgattagtctgatagtcaaagtatgatgattatagatcaaat 169  Q
    |||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||    
T  50111356 tagcttggtttgtaagctaagtcttactaaatttaatttgattagtttgatagtcaaagtataatgattatagatcaaat 50111277  T

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Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 394 - 475
Target Start/End: Original strand, 29409372 - 29409453
Alignment:
Q  394 ttaattattagatcaagtgacacaagtccattttcactaaccaatttgtccactctactttgaggacttagctttttctcta 475  Q
    |||||| || |||||||||||||  |||||||||||| |||||||||||  |||| |||||||  |||| ||||||||||||    
T  29409372 ttaattgttggatcaagtgacacgtgtccattttcacaaaccaatttgttgactccactttgataacttggctttttctcta 29409453  T

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Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 125 - 193
Target Start/End: Original strand, 23669906 - 23669974
Alignment:
Q  125 atttgattagtctgatagtcaaagtatgatgattatagatcaaatgaacaagtaaattgactaaaataa 193  Q
    ||||||||||||| ||||| | ||||||||||||||||| ||||| ||||||||| ||||  |||||||    
T  23669906 atttgattagtctaatagtaatagtatgatgattatagagcaaataaacaagtaacttgaacaaaataa 23669974  T

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Target: scaffold0015 (Bit Score: 102; Significance: 2e-50; HSPs: 5)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 89 - 194
Target Start/End: Complemental strand, 208027 - 207922
Alignment:
Q  89 atagcttggtttgtaagctaaatcttactaaatttaatttgattagtctgatagtcaaagtatgatgattatagatcaaatgaacaagtaaattgactaa 188  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  208027 atagcttggtttgtaagctaagtcttactaaatttaatttgattagtctgatagtcaaagtatgatgattatagatcaaatgaacaagtaaattgactaa 207928  T
Q  189 aataat 194  Q
    ||||||    
T  207927 aataat 207922  T

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Target: scaffold0015; HSP #2
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 90 - 220
Target Start/End: Complemental strand, 208190 - 208064
Alignment:
Q  90 tagcttggtttgtaagctaaatcttactaaatttaatttgattagtctgatagtcaaagtatgatgattatagatcaaatgaacaagtaaattgactaaa 189  Q
    |||||||||||||||||||| ||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| |||||||||| ||    
T  208190 tagcttggtttgtaagctaagtcttactaaatttaatttgattagtatgataatcaaagtatgatgattatagatcaaatgaacaaataaattgactcaa 208091  T
Q  190 ataataaacgtttatatcaaattttcatcct 220  Q
    |||||    ||||||||| | ||||||||||    
T  208090 ataat----gtttatatcgagttttcatcct 208064  T

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Target: scaffold0015; HSP #3
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 90 - 194
Target Start/End: Complemental strand, 208616 - 208512
Alignment:
Q  90 tagcttggtttgtaagctaaatcttactaaatttaatttgattagtctgatagtcaaagtatgatgattatagatcaaatgaacaagtaaattgactaaa 189  Q
    ||||||||||| |||||||| ||||||||||||||||||||||||| | ||||||||||||||||||||||| |||||||||||||||||||||||| ||    
T  208616 tagcttggtttctaagctaagtcttactaaatttaatttgattagtattatagtcaaagtatgatgattatatatcaaatgaacaagtaaattgactgaa 208517  T
Q  190 ataat 194  Q
    |||||    
T  208516 ataat 208512  T

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Target: scaffold0015; HSP #4
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 97 - 220
Target Start/End: Complemental strand, 208347 - 208228
Alignment:
Q  97 gtttgtaagctaaatcttactaaatttaatttgattagtctgatagtcaaagtatgatgattatagatcaaatgaacaagtaaattgactaaaataataa 196  Q
    ||||||||||||| ||||||||||||||||||||||||| ||||||||||| | |||||||||||||||||||||||||||||||||||| |||||||      
T  208347 gtttgtaagctaagtcttactaaatttaatttgattagtatgatagtcaaactgtgatgattatagatcaaatgaacaagtaaattgactcaaataat-- 208250  T
Q  197 acgtttatatcaaattttcatcct 220  Q
      ||||||||| | ||||||||||    
T  208249 --gtttatatcgagttttcatcct 208228  T

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Target: scaffold0015; HSP #5
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 93 - 194
Target Start/End: Complemental strand, 208449 - 208348
Alignment:
Q  93 cttggtttgtaagctaaatcttactaaatttaatttgattagtctgatagtcaaagtatgatgattatagatcaaatgaacaagtaaattgactaaaata 192  Q
    |||||||||||||| || |||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||| |||||    
T  208449 cttggtttgtaagccaagtcttactaaattaaatttgattagtatgatagtcaaagtatgatgattatagatcaaatgaacaagtaaattaactgaaata 208350  T
Q  193 at 194  Q
    ||    
T  208349 at 208348  T

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Target: chr8 (Bit Score: 102; Significance: 2e-50; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 89 - 194
Target Start/End: Original strand, 21961710 - 21961815
Alignment:
Q  89 atagcttggtttgtaagctaaatcttactaaatttaatttgattagtctgatagtcaaagtatgatgattatagatcaaatgaacaagtaaattgactaa 188  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21961710 atagcttggtttgtaagctaagtcttactaaatttaatttgattagtctgatagtcaaagtatgatgattatagatcaaatgaacaagtaaattgactaa 21961809  T
Q  189 aataat 194  Q
    ||||||    
T  21961810 aataat 21961815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 90 - 231
Target Start/End: Original strand, 22011957 - 22012094
Alignment:
Q  90 tagcttggtttgtaagctaaatcttactaaatttaatttgattagtctgatagtcaaagtatgatgattatagatcaaatgaacaagtaaattgactaaa 189  Q
    |||||||||||||||||||| |||| |||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  22011957 tagcttggtttgtaagctaagtcttgctaaatttaatttgattagtatgatagtcaaagtatgatgattacagatcaaatgaacaagtaaattgactaaa 22012056  T
Q  190 ataataaacgtttatatcaaattttcatcctgaaagacgaaa 231  Q
    |||||    ||||||||| | ||||||||||| |||| ||||    
T  22012057 ataat----gtttatatcgagttttcatcctggaagatgaaa 22012094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 90 - 220
Target Start/End: Original strand, 21961547 - 21961673
Alignment:
Q  90 tagcttggtttgtaagctaaatcttactaaatttaatttgattagtctgatagtcaaagtatgatgattatagatcaaatgaacaagtaaattgactaaa 189  Q
    |||||||||||||||||||| ||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| |||||||||| ||    
T  21961547 tagcttggtttgtaagctaagtcttactaaatttaatttgattagtatgataatcaaagtatgatgattatagatcaaatgaacaaataaattgactcaa 21961646  T
Q  190 ataataaacgtttatatcaaattttcatcct 220  Q
    |||||    ||||||||| | ||||||||||    
T  21961647 ataat----gtttatatcgagttttcatcct 21961673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 90 - 194
Target Start/End: Original strand, 21961121 - 21961225
Alignment:
Q  90 tagcttggtttgtaagctaaatcttactaaatttaatttgattagtctgatagtcaaagtatgatgattatagatcaaatgaacaagtaaattgactaaa 189  Q
    ||||||||||| |||||||| ||||||||||||||||||||||||| | ||||||||||||||||||||||| |||||||||||||||||||||||| ||    
T  21961121 tagcttggtttctaagctaagtcttactaaatttaatttgattagtattatagtcaaagtatgatgattatatatcaaatgaacaagtaaattgactgaa 21961220  T
Q  190 ataat 194  Q
    |||||    
T  21961221 ataat 21961225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 97 - 220
Target Start/End: Original strand, 21961390 - 21961509
Alignment:
Q  97 gtttgtaagctaaatcttactaaatttaatttgattagtctgatagtcaaagtatgatgattatagatcaaatgaacaagtaaattgactaaaataataa 196  Q
    ||||||||||||| ||||||||||||||||||||||||| ||||||||||| | |||||||||||||||||||||||||||||||||||| |||||||      
T  21961390 gtttgtaagctaagtcttactaaatttaatttgattagtatgatagtcaaactgtgatgattatagatcaaatgaacaagtaaattgactcaaataat-- 21961487  T
Q  197 acgtttatatcaaattttcatcct 220  Q
      ||||||||| | ||||||||||    
T  21961488 --gtttatatcgagttttcatcct 21961509  T

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Target: chr8; HSP #6
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 93 - 194
Target Start/End: Original strand, 21961288 - 21961389
Alignment:
Q  93 cttggtttgtaagctaaatcttactaaatttaatttgattagtctgatagtcaaagtatgatgattatagatcaaatgaacaagtaaattgactaaaata 192  Q
    |||||||||||||| || |||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||| |||||    
T  21961288 cttggtttgtaagccaagtcttactaaattaaatttgattagtatgatagtcaaagtatgatgattatagatcaaatgaacaagtaaattaactgaaata 21961387  T
Q  193 at 194  Q
    ||    
T  21961388 at 21961389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 90 - 186
Target Start/End: Original strand, 21960793 - 21960889
Alignment:
Q  90 tagcttggtttgtaagctaaatcttactaaatttaatttgattagtctgatagtcaaagtatgatgattatagatcaaatgaacaagtaaattgact 186  Q
    |||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||| | ||||||||    
T  21960793 tagcttggtttgtaagctaagtcttactaaatttaatttgattagtatgatagtcaaagtatgatgattatcgatcaaatgaacaaattaattgact 21960889  T

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Target: chr8; HSP #8
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 90 - 186
Target Start/End: Original strand, 21960957 - 21961053
Alignment:
Q  90 tagcttggtttgtaagctaaatcttactaaatttaatttgattagtctgatagtcaaagtatgatgattatagatcaaatgaacaagtaaattgact 186  Q
    ||||||||||| |||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||| | ||||||||    
T  21960957 tagcttggtttctaagctaagtcttactaaatttaatttgattagtatgatagtcaaagtatgatgattatcgatcaaatgaacaacttaattgact 21961053  T

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Target: chr8; HSP #9
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 120 - 194
Target Start/End: Original strand, 22013361 - 22013435
Alignment:
Q  120 atttaatttgattagtctgatagtcaaagtatgatgattatagatcaaatgaacaagtaaattgactaaaataat 194  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  22013361 atttaatttgattagtatgatagtcaaagtatgatgattatagatcaaatgaacaagtaaatagactaaaataat 22013435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 122 - 193
Target Start/End: Complemental strand, 19735410 - 19735339
Alignment:
Q  122 ttaatttgattagtctgatagtcaaagtatgatgattatagatcaaatgaacaagtaaattgactaaaataa 193  Q
    |||||||||||||| | |||||||||||| |||||||||||||| ||||||||||||| |||||||||||||    
T  19735410 ttaatttgattagtgtaatagtcaaagtaagatgattatagatctaatgaacaagtaatttgactaaaataa 19735339  T

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Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 90 - 125
Target Start/End: Original strand, 22012121 - 22012156
Alignment:
Q  90 tagcttggtttgtaagctaaatcttactaaatttaa 125  Q
    |||||||||||||||||||| |||||||||||||||    
T  22012121 tagcttggtttgtaagctaagtcttactaaatttaa 22012156  T

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Target: chr2 (Bit Score: 97; Significance: 2e-47; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 90 - 194
Target Start/End: Original strand, 21503020 - 21503124
Alignment:
Q  90 tagcttggtttgtaagctaaatcttactaaatttaatttgattagtctgatagtcaaagtatgatgattatagatcaaatgaacaagtaaattgactaaa 189  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  21503020 tagcttggtttgtaagctaagtcttactaaatttaatttgattagtctgatagtcaaagtacgatgattatagatcaaatgaacaagtaaattgactaaa 21503119  T
Q  190 ataat 194  Q
    |||||    
T  21503120 ataat 21503124  T

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Target: chr2; HSP #2
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 112 - 226
Target Start/End: Original strand, 21502878 - 21502988
Alignment:
Q  112 cttactaaatttaatttgattagtctgatagtcaaagtatgatgattatagatcaaatgaacaagtaaattgactaaaataataaacgtttatatcaaat 211  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    ||||||||| | |    
T  21502878 cttactaaatttaatttgattagtctgatagtcaaagtatgatgattatagatcaaatgaacaagtaaattgactaaaataat----gtttatatcgagt 21502973  T
Q  212 tttcatcctgaaaga 226  Q
    |||||| ||||||||    
T  21502974 tttcattctgaaaga 21502988  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 394 - 442
Target Start/End: Complemental strand, 41622492 - 41622444
Alignment:
Q  394 ttaattattagatcaagtgacacaagtccattttcactaaccaatttgt 442  Q
    |||||| || |||||| ||||||| ||||||||||||||||||||||||    
T  41622492 ttaattgttggatcaattgacacatgtccattttcactaaccaatttgt 41622444  T

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Target: chr1 (Bit Score: 97; Significance: 2e-47; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 90 - 194
Target Start/End: Complemental strand, 52071148 - 52071044
Alignment:
Q  90 tagcttggtttgtaagctaaatcttactaaatttaatttgattagtctgatagtcaaagtatgatgattatagatcaaatgaacaagtaaattgactaaa 189  Q
    |||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52071148 tagcttggtttgtaagctaagttttactaaatttaatttgattagtctgatagtcaaagtatgatgattatagatcaaatgaacaagtaaattgactaaa 52071049  T
Q  190 ataat 194  Q
    |||||    
T  52071048 ataat 52071044  T

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Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 141 - 194
Target Start/End: Original strand, 2363421 - 2363474
Alignment:
Q  141 agtcaaagtatgatgattatagatcaaatgaacaagtaaattgactaaaataat 194  Q
    ||||||||||||||||| ||||||||||||||  ||||| ||||||||||||||    
T  2363421 agtcaaagtatgatgataatagatcaaatgaaacagtaacttgactaaaataat 2363474  T

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Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 101 - 164
Target Start/End: Original strand, 2363726 - 2363789
Alignment:
Q  101 gtaagctaaatcttactaaatttaatttgattagtctgatagtcaaagtatgatgattatagat 164  Q
    ||||||||| | | ||||||||||||||||||||| | || |||||||||||||||| ||||||    
T  2363726 gtaagctaagtataactaaatttaatttgattagtataattgtcaaagtatgatgataatagat 2363789  T

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Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 123 - 169
Target Start/End: Original strand, 2363888 - 2363934
Alignment:
Q  123 taatttgattagtctgatagtcaaagtatgatgattatagatcaaat 169  Q
    ||||||||||||| |||| |||||||||||||||| |||||||||||    
T  2363888 taatttgattagtatgattgtcaaagtatgatgataatagatcaaat 2363934  T

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Target: scaffold0314 (Bit Score: 93; Significance: 5e-45; HSPs: 2)
Name: scaffold0314
Description:

Target: scaffold0314; HSP #1
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 90 - 194
Target Start/End: Original strand, 19664 - 19768
Alignment:
Q  90 tagcttggtttgtaagctaaatcttactaaatttaatttgattagtctgatagtcaaagtatgatgattatagatcaaatgaacaagtaaattgactaaa 189  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||    
T  19664 tagcttggtttgtaagctaagtcttactaaatttaatttgattagtctgatagtcaaaatatgatgattatagatcaaatgaacaattaaattgactaaa 19763  T
Q  190 ataat 194  Q
    |||||    
T  19764 ataat 19768  T

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Target: scaffold0314; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 149 - 231
Target Start/End: Original strand, 19462 - 19540
Alignment:
Q  149 tatgatgattatagatcaaatgaacaagtaaattgactaaaataataaacgtttatatcaaattttcatcctgaaagacgaaa 231  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||    ||||||||| | ||||||||||| |||||||||    
T  19462 tatgatgataatagatcaaatgaacaagtaaattgactaaaataat----gtttatatcgagttttcatcctggaagacgaaa 19540  T

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Target: chr5 (Bit Score: 88; Significance: 5e-42; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 102 - 230
Target Start/End: Original strand, 17424477 - 17424601
Alignment:
Q  102 taagctaaatcttactaaatttaatttgattagtctgatagtcaaagtatgatgattatagatcaaatgaacaagtaaattgactaaaataataaacgtt 201  Q
    |||||||| ||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||| ||||||||||||||||||||    |||    
T  17424477 taagctaagtcttactaaatttaatttgattagtctgatagtcaaaatatgataattatagatcaaatgaactagtaaattgactaaaataat----gtt 17424572  T
Q  202 tatatcaaattttcatcctgaaagacgaa 230  Q
    |||||| | ||||||||||||||||||||    
T  17424573 tatatcgagttttcatcctgaaagacgaa 17424601  T

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Target: chr6 (Bit Score: 46; Significance: 5e-17; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 89 - 231
Target Start/End: Complemental strand, 29907994 - 29907856
Alignment:
Q  89 atagcttggtttgtaagctaaatcttactaaatttaatttgattagtctgatagtcaaagtatgatgattatagatcaaatgaacaagtaaattgactaa 188  Q
    ||||||||||||||||||||| || ||||| |  ||||| ||||||| |   |||||||||||||||| |||| |   ||||||||||||| ||||||||    
T  29907994 atagcttggtttgtaagctaagtcgtactatagataattagattagtgtataagtcaaagtatgatgaatatataatcaatgaacaagtaacttgactaa 29907895  T
Q  189 aataataaacgtttatatcaaattttcatcctgaaagacgaaa 231  Q
    ||||||    ||||| ||| | ||||||||||| |||||||||    
T  29907894 aataat----gtttaaatcgagttttcatcctggaagacgaaa 29907856  T

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Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 89 - 194
Target Start/End: Complemental strand, 29906215 - 29906110
Alignment:
Q  89 atagcttggtttgtaagctaaatcttactaaatttaatttgattagtctgatagtcaaagtatgatgattatagatcaaatgaacaagtaaattgactaa 188  Q
    ||||||||||||||||| ||| |||||||| |  ||||| || |||| |   |||||||||| ||||| |||| | | ||||||||||||| ||||||||    
T  29906215 atagcttggtttgtaagttaactcttactatagataattagactagtgtataagtcaaagtaggatgaatatataaccaatgaacaagtaacttgactaa 29906116  T
Q  189 aataat 194  Q
    ||||||    
T  29906115 aataat 29906110  T

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Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 89 - 194
Target Start/End: Original strand, 30118165 - 30118270
Alignment:
Q  89 atagcttggtttgtaagctaaatcttactaaatttaatttgattagtctgatagtcaaagtatgatgattatagatcaaatgaacaagtaaattgactaa 188  Q
    ||||||||||||||||| ||| |||||||| |  ||||| || |||| |   |||||||||| ||||| |||| | | ||||||||||||| ||||||||    
T  30118165 atagcttggtttgtaagttaactcttactatagataattagactagtgtataagtcaaagtaggatgaatatataaccaatgaacaagtaacttgactaa 30118264  T
Q  189 aataat 194  Q
    ||||||    
T  30118265 aataat 30118270  T

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Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 89 - 193
Target Start/End: Original strand, 30120834 - 30120938
Alignment:
Q  89 atagcttggtttgtaagctaaatcttactaaatttaatttgattagtctgatagtcaaagtatgatgattatagatcaaatgaacaagtaaattgactaa 188  Q
    ||||||||||||||||||||| || ||||| |  ||||| || |||| |   |||||||||||||||| |||| | | ||||||||||||| |||| |||    
T  30120834 atagcttggtttgtaagctaagtcgtactatagataattagactagtgtataagtcaaagtatgatgaatatataaccaatgaacaagtaacttgagtaa 30120933  T
Q  189 aataa 193  Q
    |||||    
T  30120934 aataa 30120938  T

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Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 89 - 192
Target Start/End: Complemental strand, 29906716 - 29906613
Alignment:
Q  89 atagcttggtttgtaagctaaatcttactaaatttaatttgattagtctgatagtcaaagtatgatgattatagatcaaatgaacaagtaaattgactaa 188  Q
    ||||||||| ||||||||||| |||||||| | |||||| || ||||||   ||||||| || ||||| |||| | |  |||||||||||| ||||||||    
T  29906716 atagcttgggttgtaagctaagtcttactatagttaattagactagtctataagtcaaactaggatgaatatataaccgatgaacaagtaacttgactaa 29906617  T
Q  189 aata 192  Q
    ||||    
T  29906616 aata 29906613  T

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Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 89 - 192
Target Start/End: Original strand, 30117664 - 30117767
Alignment:
Q  89 atagcttggtttgtaagctaaatcttactaaatttaatttgattagtctgatagtcaaagtatgatgattatagatcaaatgaacaagtaaattgactaa 188  Q
    ||||||||| ||||||||||| |||||||| | |||||| || ||||||   ||||||| || ||||| |||| | |  |||||||||||| ||||||||    
T  30117664 atagcttgggttgtaagctaagtcttactatagttaattagactagtctataagtcaaactaggatgaatatataaccgatgaacaagtaacttgactaa 30117763  T
Q  189 aata 192  Q
    ||||    
T  30117764 aata 30117767  T

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Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 89 - 194
Target Start/End: Complemental strand, 29907827 - 29907721
Alignment:
Q  89 atagcttggtttgtaagctaaatcttactaaatttaatttgattagtctg-atagtcaaagtatgatgattatagatcaaatgaacaagtaaattgacta 187  Q
    |||||||||| |||||| ||| |||||||| | |||||| || |||| |  | |||||||||| ||||| |||| | | ||||||||||||| |||||||    
T  29907827 atagcttggtgtgtaagttaagtcttactatagttaattagagtagtgtataaagtcaaagtaggatgaatatataaccaatgaacaagtaatttgacta 29907728  T
Q  188 aaataat 194  Q
    |||||||    
T  29907727 aaataat 29907721  T

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Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 143 - 231
Target Start/End: Complemental strand, 29906494 - 29906410
Alignment:
Q  143 tcaaagtatgatgattatagatcaaatgaacaagtaaattgactaaaataataaacgtttatatcaaattttcatcctgaaagacgaaa 231  Q
    |||||||||||||| |||| | |  |||||||||||| ||||||||||||||    ||||| ||| | ||||||||||| |||||||||    
T  29906494 tcaaagtatgatgaatatataacctatgaacaagtaacttgactaaaataat----gtttaaatcgatttttcatcctggaagacgaaa 29906410  T

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Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 143 - 231
Target Start/End: Original strand, 30117886 - 30117970
Alignment:
Q  143 tcaaagtatgatgattatagatcaaatgaacaagtaaattgactaaaataataaacgtttatatcaaattttcatcctgaaagacgaaa 231  Q
    |||||||||||||| |||| | |  |||||||||||| ||||||||||||||    ||||| ||| | ||||||||||| |||||||||    
T  30117886 tcaaagtatgatgaatatataacctatgaacaagtaacttgactaaaataat----gtttaaatcgatttttcatcctggaagacgaaa 30117970  T

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Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 141 - 231
Target Start/End: Complemental strand, 29906330 - 29906244
Alignment:
Q  141 agtcaaagtatgatgattatagatcaaatgaacaagtaaattgactaaaataataaacgtttatatcaaattttcatcctgaaagacgaaa 231  Q
    |||||||||| ||||| |||| | | ||| ||||||||| |||||||||||| |    ||||| ||||||||||||||||  |||||||||    
T  29906330 agtcaaagtaggatgaatatataaccaattaacaagtaacttgactaaaatatt----gtttaaatcaaattttcatcctagaagacgaaa 29906244  T

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Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 141 - 231
Target Start/End: Original strand, 30118050 - 30118136
Alignment:
Q  141 agtcaaagtatgatgattatagatcaaatgaacaagtaaattgactaaaataataaacgtttatatcaaattttcatcctgaaagacgaaa 231  Q
    |||||||||| ||||| |||| | | ||| ||||||||| |||||||||||| |    ||||| ||||||||||||||||  |||||||||    
T  30118050 agtcaaagtaggatgaatatataaccaattaacaagtaacttgactaaaatatt----gtttaaatcaaattttcatcctagaagacgaaa 30118136  T

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Target: scaffold0168 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0168
Description:

Target: scaffold0168; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 148 - 189
Target Start/End: Complemental strand, 10063 - 10022
Alignment:
Q  148 gtatgatgattatagatcaaatgaacaagtaaattgactaaa 189  Q
    |||||||||||||||||| |||||||| |||| |||||||||    
T  10063 gtatgatgattatagatctaatgaacatgtaatttgactaaa 10022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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