View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2695_low_5 (Length: 512)

Name: NF2695_low_5
Description: NF2695
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2695_low_5
NF2695_low_5
[»] chr8 (9 HSPs)
chr8 (14-493)||(37031637-37032121)
chr8 (343-495)||(37021413-37021565)
chr8 (75-315)||(8781301-8781530)
chr8 (74-127)||(18836182-18836235)
chr8 (78-129)||(8370668-8370719)
chr8 (150-208)||(14984115-14984173)
chr8 (78-129)||(6431723-6431774)
chr8 (78-129)||(26241864-26241915)
chr8 (78-129)||(26652706-26652757)
[»] chr4 (16 HSPs)
chr4 (18-238)||(5524139-5524365)
chr4 (76-324)||(19373983-19374234)
chr4 (77-332)||(9538588-9538845)
chr4 (76-315)||(32637130-32637372)
chr4 (74-332)||(19363039-19363297)
chr4 (271-332)||(5524601-5524663)
chr4 (179-238)||(11421712-11421770)
chr4 (77-129)||(11421821-11421873)
chr4 (78-129)||(4546899-4546950)
chr4 (78-129)||(9488382-9488433)
chr4 (78-129)||(15462337-15462388)
chr4 (78-129)||(34976388-34976439)
chr4 (255-332)||(28392553-28392631)
chr4 (77-130)||(30039918-30039971)
chr4 (80-117)||(35224516-35224553)
chr4 (79-131)||(5667278-5667330)
[»] chr7 (11 HSPs)
chr7 (27-314)||(25844887-25845177)
chr7 (178-332)||(24442894-24443050)
chr7 (178-324)||(15168810-15168959)
chr7 (178-238)||(31189889-31189948)
chr7 (84-171)||(19389336-19389423)
chr7 (178-238)||(18257084-18257143)
chr7 (78-129)||(18258539-18258590)
chr7 (78-129)||(8465835-8465886)
chr7 (78-129)||(10666479-10666530)
chr7 (78-129)||(41680383-41680434)
chr7 (76-108)||(24442789-24442821)
[»] chr6 (11 HSPs)
chr6 (67-235)||(19219251-19219417)
chr6 (178-332)||(10358570-10358727)
chr6 (78-129)||(14075316-14075367)
chr6 (178-260)||(19734762-19734842)
chr6 (178-260)||(19735037-19735117)
chr6 (79-156)||(13194769-13194846)
chr6 (78-129)||(33317701-33317752)
chr6 (178-260)||(21995663-21995743)
chr6 (271-332)||(28173246-28173305)
chr6 (76-141)||(10358485-10358548)
chr6 (96-164)||(4074198-4074265)
[»] chr2 (11 HSPs)
chr2 (178-324)||(29801109-29801257)
chr2 (179-260)||(20686939-20687020)
chr2 (178-238)||(24763189-24763248)
chr2 (178-238)||(15341559-15341618)
chr2 (78-130)||(24228629-24228681)
chr2 (78-129)||(15341458-15341509)
chr2 (74-129)||(19617268-19617323)
chr2 (77-128)||(37444003-37444054)
chr2 (255-324)||(36270877-36270947)
chr2 (77-130)||(24763087-24763140)
chr2 (178-238)||(19617159-19617218)
[»] chr3 (6 HSPs)
chr3 (74-332)||(26816921-26817182)
chr3 (76-315)||(14147666-14147907)
chr3 (178-332)||(15316693-15316848)
chr3 (78-129)||(21399630-21399681)
chr3 (78-129)||(25978142-25978193)
chr3 (79-117)||(23014553-23014591)
[»] chr5 (10 HSPs)
chr5 (78-195)||(28719120-28719237)
chr5 (77-129)||(39428275-39428327)
chr5 (78-129)||(31097652-31097703)
chr5 (80-143)||(31651202-31651265)
chr5 (74-129)||(39536017-39536072)
chr5 (178-235)||(20099820-20099876)
chr5 (89-129)||(9811159-9811199)
chr5 (89-129)||(12703400-12703440)
chr5 (89-129)||(12764416-12764456)
chr5 (81-129)||(25804803-25804851)
[»] chr1 (6 HSPs)
chr1 (78-167)||(35132705-35132794)
chr1 (80-169)||(9916012-9916100)
chr1 (86-165)||(31234170-31234249)
chr1 (271-331)||(16069669-16069729)
chr1 (78-129)||(28134138-28134189)
chr1 (80-129)||(43801782-43801831)
[»] scaffold0023 (1 HSPs)
scaffold0023 (74-129)||(108536-108591)
[»] scaffold0111 (1 HSPs)
scaffold0111 (78-129)||(27375-27426)
[»] scaffold0001 (1 HSPs)
scaffold0001 (78-129)||(138123-138174)


Alignment Details
Target: chr8 (Bit Score: 380; Significance: 0; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 14 - 493
Target Start/End: Original strand, 37031637 - 37032121
Alignment:
Q  14 cataggttaagagaaaactagggtttgatttttgcctttagggtttctcaaaatgtgt--catctgacttcagcacaagggttgtatttatagaactact 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||| |||||||||||||||| |||    
T  37031637 cataggttaagagaaaactagggtttgatttttgcctttagggtttctcaaaatgtgtgtcatctgacttcagcacaagagttgtatttatagaacaact 37031736  T
Q  112 tgtgtgttctgcaagtcaagtaatcactactggacttatgtaagctcattaacccattagtgttcactaactaattagcgttatttgctaaatgcaccca 211  Q
    |||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  37031737 tgtgtgttttgcaagtcaagtaatcactactggacttatgtaagcccattaacccattagtgttcactaactaattatcgttatttgctaaatgcaccca 37031836  T
Q  212 atcttataagtcttacttatatttctcattctgactgttatattgtgt--gaccatatata--ttcttgtaatgttggcaataaa-ttaaattttatatt 306  Q
    |||||    ||||||||||||||||| |||||||||||| ||||||||  |||||||||||  |||||||||||||||||||||| ||||||||||||||    
T  37031837 atctt----gtcttacttatatttctaattctgactgttctattgtgtatgaccatatataggttcttgtaatgttggcaataaaattaaattttatatt 37031932  T
Q  307 taatattatgaatagtgaacggtatccacattcgtaccactattccttctgatcatgacacaattttttacgaacgaaatcaatatcttagaacccaaat 406  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37031933 taatattatgaatagtgaacggtatccacattcgtgccactattccttctgatcatgacacaattttttacgaacgaaatcaatatcttagaacccaaat 37032032  T
Q  407 cacgcataattgctatcgcgccactacttttaacgaaccttcatcaccaatttgtgagtca--atttcaaccaaatttatatgaggttc 493  Q
    || ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||    
T  37032033 catgcataattgctatcgcgccacaacttttaacgaaccttcatcaccaatttgtgagtcaatatttcaaccaaatttatatgaggttc 37032121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 343 - 495
Target Start/End: Original strand, 37021413 - 37021565
Alignment:
Q  343 ccactattccttctgatcatgacacaattttttacgaacgaaatcaatatcttagaacccaaatcacgcataattgctatcgcgccactacttttaacga 442  Q
    |||||||||||||||||| || |||  |||||||||||| |||||||||||| | |||||||||||||||| |||| |||  |||| | | |||||||||    
T  37021413 ccactattccttctgatcgtggcacgtttttttacgaaccaaatcaatatctcaaaacccaaatcacgcatgattgatattacgccgcgatttttaacga 37021512  T
Q  443 accttcatcaccaatttgtgagtcaatttcaaccaaatttatatgaggttcat 495  Q
    || ||||||||||| || ||||| |||||||||||||||||||||||||||||    
T  37021513 acattcatcaccaaattatgagttaatttcaaccaaatttatatgaggttcat 37021565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 75 - 315
Target Start/End: Original strand, 8781301 - 8781530
Alignment:
Q  75 ctgacttcagcacaagggttgtatttatagaactacttgtgtgttctgcaagtcaagtaatcactactggacttatgtaagctcattaacccattagtgt 174  Q
    |||||||||||||||||||| |||||||||||||||||||||| | ||||||||||||||||              | |||| ||||| | |||| | ||    
T  8781301 ctgacttcagcacaagggttctatttatagaactacttgtgtgctttgcaagtcaagtaatcc-------------gcaagcccatta-ctcattcgcgt 8781386  T
Q  175 tcactaactaattagcgttatttgctaaatgcacccaatcttataagtcttacttatatttctcattctgactgttata--ttgtgtgaccatatatatt 272  Q
       ||||||||||||||||||||||||||| ||||| |  |||||||||||||||||||||||| || |||  ||||||   ||||||||| ||||  ||    
T  8781387 aacctaactaattagcgttatttgctaaatacaccccaagttataagtcttacttatatttctccttttgaacgttatactgtgtgtgaccctataagtt 8781486  T
Q  273 cttgtaatgttggcaataa-attaaattttatatttaatattat 315  Q
    | |||||  ||| |||||| |||||||||| |||||||||||||    
T  8781487 cctgtaacattgacaataatattaaattttttatttaatattat 8781530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 74 - 127
Target Start/End: Complemental strand, 18836235 - 18836182
Alignment:
Q  74 tctgacttcagcacaagggttgtatttatagaactacttgtgtgttctgcaagt 127  Q
    ||||||||||||||||||||| ||||||||||||| |  |||||||||||||||    
T  18836235 tctgacttcagcacaagggttctatttatagaactccaagtgtgttctgcaagt 18836182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 78 - 129
Target Start/End: Original strand, 8370668 - 8370719
Alignment:
Q  78 acttcagcacaagggttgtatttatagaactacttgtgtgttctgcaagtca 129  Q
    |||||||||| |||||| ||||||||||||| |||||||||| |||||||||    
T  8370668 acttcagcactagggttctatttatagaactccttgtgtgttatgcaagtca 8370719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 150 - 208
Target Start/End: Complemental strand, 14984173 - 14984115
Alignment:
Q  150 tgtaagctcattaacccattagtgttcactaactaattagcgttatttgctaaatgcac 208  Q
    ||||||| ||||||||||||||  ||| ||||||||||||||| |||||||||| ||||    
T  14984173 tgtaagcccattaacccattagctttcgctaactaattagcgtcatttgctaaaagcac 14984115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 78 - 129
Target Start/End: Complemental strand, 6431774 - 6431723
Alignment:
Q  78 acttcagcacaagggttgtatttatagaactacttgtgtgttctgcaagtca 129  Q
    |||||||||| |||||| ||||||||||||| |||||||| ||| |||||||    
T  6431774 acttcagcactagggttctatttatagaactccttgtgtgctcttcaagtca 6431723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 78 - 129
Target Start/End: Complemental strand, 26241915 - 26241864
Alignment:
Q  78 acttcagcacaagggttgtatttatagaactacttgtgtgttctgcaagtca 129  Q
    |||||||||| |||||| ||||||||||||| |||||||| | |||||||||    
T  26241915 acttcagcactagggttctatttatagaactccttgtgtgctatgcaagtca 26241864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 78 - 129
Target Start/End: Original strand, 26652706 - 26652757
Alignment:
Q  78 acttcagcacaagggttgtatttatagaactacttgtgtgttctgcaagtca 129  Q
    |||| ||||| |||||| ||||||||||||| |||||||| |||||||||||    
T  26652706 actttagcactagggttctatttatagaactccttgtgtgctctgcaagtca 26652757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 106; Significance: 8e-53; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 106; E-Value: 8e-53
Query Start/End: Original strand, 18 - 238
Target Start/End: Original strand, 5524139 - 5524365
Alignment:
Q  18 ggttaagagaaaacta--gggtttgatttttgcctttagggtttctcaaaatgtgtca-tctgacttcagcacaagggttgtatttatagaactacttgt 114  Q
    ||||||||||||||||  |||||||||||| ||||||||||||||||||||||||| | |||||||||| |||||  ||| |||||||||||||||||||    
T  5524139 ggttaagagaaaactatagggtttgattttcgcctttagggtttctcaaaatgtgtaactctgacttcaacacaaaagttctatttatagaactacttgt 5524238  T
Q  115 gtgttctgc---aagtcaagtaatcactactggacttatgtaagctcattaacccattagtgttcactaactaattagcgttatttgctaaatgcaccca 211  Q
    | | |||||   |||||||||||||| |||||| ||| ||||| | ||||||||||| ||  ||| |||||||||||||   |||||||||||||| ||     
T  5524239 gcgctctgctgcaagtcaagtaatcattactgggcttttgtaatcccattaacccatcaggtttcgctaactaattagcaacatttgctaaatgcagccc 5524338  T
Q  212 atcttataagtcttacttatatttctc 238  Q
    |||||||||||||||||||||||||||    
T  5524339 atcttataagtcttacttatatttctc 5524365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 76 - 324
Target Start/End: Complemental strand, 19374234 - 19373983
Alignment:
Q  76 tgacttcagcacaagggttgtatttatagaactacttgtgtgttctgcaagtcaagtaatcactactggacttatgtaagctcattaacccatt-agtgt 174  Q
    ||||||||||||||||||| ||||||||||||| || | ||||||||||||||| | |||||||| ||| |||  |||||| ||||||| |||| ||  |    
T  19374234 tgacttcagcacaagggttctatttatagaactcctagcgtgttctgcaagtca-gaaatcactattggtcttccgtaagcccattaacgcatttagcct 19374136  T
Q  175 tca-ctaactaattagcgttatttgctaaatgcacccaatcttataagtcttacttatatttctcattctgactgttatattgtg--tgaccatatatat 271  Q
    ||  |||||||||||| | ||||||||||| ||||||| | |||||||||||| ||||||||||| || |||||||| | |||||  ||||| |||| ||    
T  19374135 tctgctaactaattagtgatatttgctaaacgcaccca-tattataagtcttatttatatttctccttttgactgttcttttgtgtatgaccctatagat 19374037  T
Q  272 tcttgtaatgttggcaataa-attaaattttatatttaatattatgaatagtga 324  Q
    |||||  | |||  |||||| |||||||  ||||||||||||||| ||||||||    
T  19374036 tcttgccacgttaacaataatattaaatcctatatttaatattataaatagtga 19373983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 77 - 332
Target Start/End: Complemental strand, 9538845 - 9538588
Alignment:
Q  77 gacttcagcacaagggttgtatttatagaactacttgtgtgttctgcaagtcaagtaatcactactggacttatgtaagctcattaaccca-ttagtgtt 175  Q
    |||||||||||||||||| ||||||||||||| ||||||||||||| ||||| || | |||||||||| |||  ||||||   |||||||| |||   ||    
T  9538845 gacttcagcacaagggttctatttatagaacttcttgtgtgttctgaaagtc-agcagtcactactgggcttccgtaagcctgttaacccatttaacttt 9538747  T
Q  176 cactaactaattagcgttatttgctaaatgcacccaatcttataagtcttacttatatttctcattctgactgttatat--tgtgtgaccatatatattc 273  Q
      ||||| |||||  ||||||| ||||| |||||| ||  ||||||||||||||||||| ||| || |||  ||| |||  ||||||||| ||||| |||    
T  9538746 tgctaaccaattaatgttattttctaaacgcaccc-ataatataagtcttacttatattcctccttttgatcgttctattgtgtgtgaccctatatgttc 9538648  T
Q  274 ttgtaatgttggcaataa-attaaattttatatttaatattatgaatagtgaacggtatc 332  Q
    || | | ||||||||||| ||||||| || ||||||||||||| || | ||| |||||||    
T  9538647 ttttcaagttggcaataatattaaatcttgtatttaatattataaacaatgagcggtatc 9538588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 76 - 315
Target Start/End: Complemental strand, 32637372 - 32637130
Alignment:
Q  76 tgacttcagcacaagggttgtatttatagaactacttgtgtgttctgcaagtcaagtaatcactactggacttatgtaagctcattaacccatt-agtgt 174  Q
    ||||||||||||||||||| ||||||||||||| ||  | || ||||||||||| | | |||||| |||||||  |||||| ||||| | |||| |   |    
T  32637372 tgacttcagcacaagggttatatttatagaactcctaatatgctctgcaagtca-gaagtcactattggacttccgtaagcccattagcgcattcaacct 32637274  T
Q  175 tca-ctaactaattagcgttatttgctaaatgcacccaatcttataagtcttacttatatttctcattctgactgttatattg--tgtgaccatatatat 271  Q
    ||  ||||||||||||| |||||||||||  |||||| || |||| ||||||||||||||||||| || |||| ||| | |||  ||||||| | ||       
T  32637273 tctgctaactaattagcattatttgctaagcgcaccc-atattattagtcttacttatatttctccttttgaccgttcttttgtttgtgaccctgtagga 32637175  T
Q  272 tcttgtaatgttggcaataa-attaaattttatatttaatattat 315  Q
    |||||| ||||||||||||| ||||||| ||||||||||||||||    
T  32637174 tcttgtcatgttggcaataatattaaatcttatatttaatattat 32637130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 74 - 332
Target Start/End: Complemental strand, 19363297 - 19363039
Alignment:
Q  74 tctgacttcagcacaagggttgtatttatagaactacttgtgtgttctgcaagtcaagtaatcactactggacttatgtaagctcattaacccattagtg 173  Q
    ||||||||||||||||||||| ||||||||||||| |  ||||||||| || ||| || | |||||| ||| ||| ||||||| |||||||   |||       
T  19363297 tctgacttcagcacaagggttttatttatagaactccaagtgtgttctacacgtc-agaattcactattgggcttctgtaagcccattaacttgttaact 19363199  T
Q  174 ttcactaactaattagcgttatttgctaaatgcacccaatcttataagtcttacttatatttctcattctgactgttatattgtg--tgaccatatatat 271  Q
    ||  |||||| ||||| ||||||||||||| |||||| ||  |  |||||||||||||||||||| || ||| |||| | |||||  ||||| |||| ||    
T  19363198 tttgctaactgattagtgttatttgctaaacgcaccc-ataatgcaagtcttacttatatttctc-ttttgattgttcttttgtgtatgaccctatagat 19363101  T
Q  272 tcttgtaatgttggcaataa-attaaattttatatttaatattatgaatagtgaacggtatc 332  Q
    ||| |  | ||||||||||| ||||||| | |||||||| ||||| |||||||| |||||||    
T  19363100 tctagccacgttggcaataatattaaatctaatatttaacattataaatagtgagcggtatc 19363039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 271 - 332
Target Start/End: Original strand, 5524601 - 5524663
Alignment:
Q  271 ttcttgtaatgttggcaataa-attaaattttatatttaatattatgaatagtgaacggtatc 332  Q
    ||||||||||||||||||||| ||||||| || ||||||||||||| |||||||| |||||||    
T  5524601 ttcttgtaatgttggcaataatattaaatcttgtatttaatattataaatagtgagcggtatc 5524663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 179 - 238
Target Start/End: Complemental strand, 11421770 - 11421712
Alignment:
Q  179 taactaattagcgttatttgctaaatgcacccaatcttataagtcttacttatatttctc 238  Q
    ||||||||||||||| ||| ||||| ||||||| || |||||||||||||||||||||||    
T  11421770 taactaattagcgttcttttctaaacgcaccca-tcatataagtcttacttatatttctc 11421712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 77 - 129
Target Start/End: Complemental strand, 11421873 - 11421821
Alignment:
Q  77 gacttcagcacaagggttgtatttatagaactacttgtgtgttctgcaagtca 129  Q
    ||||||||||| |||||| ||||||||||||| || ||||| |||||||||||    
T  11421873 gacttcagcacgagggttctatttatagaactcctagtgtgctctgcaagtca 11421821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 78 - 129
Target Start/End: Complemental strand, 4546950 - 4546899
Alignment:
Q  78 acttcagcacaagggttgtatttatagaactacttgtgtgttctgcaagtca 129  Q
    |||||||||| |||||| ||||||||||||| ||| |||| |||||||||||    
T  4546950 acttcagcactagggttctatttatagaactccttatgtgctctgcaagtca 4546899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 78 - 129
Target Start/End: Complemental strand, 9488433 - 9488382
Alignment:
Q  78 acttcagcacaagggttgtatttatagaactacttgtgtgttctgcaagtca 129  Q
    |||||||||| |||||| |||||||||||||  ||||||| |||||||||||    
T  9488433 acttcagcactagggttatatttatagaactctttgtgtgctctgcaagtca 9488382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 78 - 129
Target Start/End: Complemental strand, 15462388 - 15462337
Alignment:
Q  78 acttcagcacaagggttgtatttatagaactacttgtgtgttctgcaagtca 129  Q
    |||||||||| |||||| ||||||||||||| |||||||| | |||||||||    
T  15462388 acttcagcactagggttctatttatagaactccttgtgtgctatgcaagtca 15462337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 78 - 129
Target Start/End: Complemental strand, 34976439 - 34976388
Alignment:
Q  78 acttcagcacaagggttgtatttatagaactacttgtgtgttctgcaagtca 129  Q
    |||||||||| |||||| ||||||||||||| |||||||| | |||||||||    
T  34976439 acttcagcactagggttctatttatagaactccttgtgtgctatgcaagtca 34976388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 255 - 332
Target Start/End: Original strand, 28392553 - 28392631
Alignment:
Q  255 tgtgtgaccatatatattcttgtaatgttggcaataa-attaaattttatatttaatattatgaatagtgaacggtatc 332  Q
    ||||||||| ||||  |||  |||||||||||||||| |||||||   |||||||||||||| || |||||||||||||    
T  28392553 tgtgtgaccctataggttcccgtaatgttggcaataatattaaatcacatatttaatattataaacagtgaacggtatc 28392631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 77 - 130
Target Start/End: Original strand, 30039918 - 30039971
Alignment:
Q  77 gacttcagcacaagggttgtatttatagaactacttgtgtgttctgcaagtcaa 130  Q
    ||||||||||| |||||| |||||||| |||| || ||||| ||||||||||||    
T  30039918 gacttcagcactagggttctatttatataactcctagtgtgctctgcaagtcaa 30039971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 80 - 117
Target Start/End: Complemental strand, 35224553 - 35224516
Alignment:
Q  80 ttcagcacaagggttgtatttatagaactacttgtgtg 117  Q
    ||||||||||||||| |||||||||||| |||||||||    
T  35224553 ttcagcacaagggttctatttatagaaccacttgtgtg 35224516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 79 - 131
Target Start/End: Original strand, 5667278 - 5667330
Alignment:
Q  79 cttcagcacaagggttgtatttatagaactacttgtgtgttctgcaagtcaag 131  Q
    |||||||||||||||| |||||||||||  ||||||||| || ||||| ||||    
T  5667278 cttcagcacaagggttctatttatagaatcacttgtgtggtcagcaagccaag 5667330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 93; Significance: 5e-45; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 27 - 314
Target Start/End: Original strand, 25844887 - 25845177
Alignment:
Q  27 aaaactagggtttgatttttgcctttagggtttctcaaaatgtgtcatct-gacttcagcacaagggttgtatttatagaactacttgtgtgttctgcaa 125  Q
    ||||||| ||||||||||| ||||||||||| ||||||||  ||| |  | ||||||||||||||| |   ||||| | |||||||||||||||||||||    
T  25844887 aaaactaaggtttgattttcgcctttagggtctctcaaaacttgtaacttcgacttcagcacaaggatcc-atttacataactacttgtgtgttctgcaa 25844985  T
Q  126 gtcaagtaatcactactggacttatgtaagctcattaacccattagtgttcactaactaattagcgttatttgctaaatgcacccaatcttataagtctt 225  Q
    ||||||||||||||| ||| ||| | ||||| || |||||||| ||  ||| ||||||||||| ||| ||||||||||||||||| ||||||||||||||    
T  25844986 gtcaagtaatcactaatgggcttctataagcccactaacccatcagccttcgctaactaattaacgtcatttgctaaatgcaccccatcttataagtctt 25845085  T
Q  226 acttatatttctcattctgactgttatat--tgtgtgaccatatatattcttgtaatgttggcaataa-attaaattttatatttaatatta 314  Q
    ||||| ||||||  || |||  ||| |||  ||||||||  ||||  |||||||||  |||||| ||| ||||||| |||||||||||||||    
T  25845086 acttaaatttctgcttttgatcgttctattgtgtgtgacactataggttcttgtaacattggcattaatattaaatcttatatttaatatta 25845177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 178 - 332
Target Start/End: Original strand, 24442894 - 24443050
Alignment:
Q  178 ctaactaattagcgttatttgctaaatgcacccaatcttataagtcttacttatatttctcattctgactgttatattg--tgtgaccatatatattctt 275  Q
    |||||||||||||||||||| ||||| |||||| || |||||||||||||||||||||||| || |||| ||| | |||  ||||||| ||||  |||||    
T  24442894 ctaactaattagcgttattttctaaacgcaccc-atattataagtcttacttatatttctccttttgaccgttcttttgtttgtgaccctataggttctt 24442992  T
Q  276 gtaatgttggcaataa-attaaattttatatttaatattatgaatagtgaacggtatc 332  Q
    || | ||||||||||| ||||||| |||||||||||||||| || ||||| |||||||    
T  24442993 gtcacgttggcaataatattaaatcttatatttaatattataaacagtgagcggtatc 24443050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 178 - 324
Target Start/End: Original strand, 15168810 - 15168959
Alignment:
Q  178 ctaactaattagcgttatttgctaaatgcacccaatcttataagtcttacttatatttctcattctgactgttatat--tgtgtgaccatatatattctt 275  Q
    ||||||||||||  | ||||||||| | ||||| |  |||||||||||||||||||||||| || |||| ||| |||  ||||||||| ||||   ||||    
T  15168810 ctaactaattagtttcatttgctaatttcaccccaagttataagtcttacttatatttctctttttgaccgttctattgtgtgtgaccctataggctctt 15168909  T
Q  276 gtaatgttggcaataa-attaaattttatatttaatattatgaatagtga 324  Q
    |||| ||||||||||| ||||||| |||||||||||||||| || |||||    
T  15168910 gtaacgttggcaataatattaaatcttatatttaatattataaacagtga 15168959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 178 - 238
Target Start/End: Original strand, 31189889 - 31189948
Alignment:
Q  178 ctaactaattagcgttatttgctaaatgcacccaatcttataagtcttacttatatttctc 238  Q
    |||||||||||||||||||||||||| |||||| ||| |||||||||||||| ||||||||    
T  31189889 ctaactaattagcgttatttgctaaacgcaccc-atcatataagtcttacttgtatttctc 31189948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 84 - 171
Target Start/End: Complemental strand, 19389423 - 19389336
Alignment:
Q  84 gcacaagggttgtatttatagaactacttgtgtgttctgcaagtcaagtaatcactactggacttatgtaagctcattaacccattag 171  Q
    ||||||||||| ||||||||||||||||| |||| || |||||||| ||||||| | || | ||| | ||||| ||||||||||||||    
T  19389423 gcacaagggttctatttatagaactacttatgtgctcagcaagtcaggtaatcattcctaggcttctataagcccattaacccattag 19389336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 178 - 238
Target Start/End: Original strand, 18257084 - 18257143
Alignment:
Q  178 ctaactaattagcgttatttgctaaatgcacccaatcttataagtcttacttatatttctc 238  Q
    ||||||||||| |||||||| |||||||||||| ||| ||||||||||| |||||||||||    
T  18257084 ctaactaattaacgttatttactaaatgcaccc-atcatataagtcttagttatatttctc 18257143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 78 - 129
Target Start/End: Original strand, 18258539 - 18258590
Alignment:
Q  78 acttcagcacaagggttgtatttatagaactacttgtgtgttctgcaagtca 129  Q
    |||||||||| |||||| ||||||||||||| |||||||| |||||||||||    
T  18258539 acttcagcactagggttctatttatagaactccttgtgtgctctgcaagtca 18258590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 78 - 129
Target Start/End: Complemental strand, 8465886 - 8465835
Alignment:
Q  78 acttcagcacaagggttgtatttatagaactacttgtgtgttctgcaagtca 129  Q
    |||||||||| |||||| ||||||||||||| |||||||| | |||||||||    
T  8465886 acttcagcactagggttctatttatagaactccttgtgtgctatgcaagtca 8465835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 78 - 129
Target Start/End: Original strand, 10666479 - 10666530
Alignment:
Q  78 acttcagcacaagggttgtatttatagaactacttgtgtgttctgcaagtca 129  Q
    |||||||||| |||||| ||||||||||||| || ||||| |||||||||||    
T  10666479 acttcagcactagggttctatttatagaactcctagtgtgctctgcaagtca 10666530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 78 - 129
Target Start/End: Original strand, 41680383 - 41680434
Alignment:
Q  78 acttcagcacaagggttgtatttatagaactacttgtgtgttctgcaagtca 129  Q
    |||||| ||| |||||| ||||||||||||| |||||||| |||||||||||    
T  41680383 acttcaacactagggttctatttatagaactccttgtgtgctctgcaagtca 41680434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 76 - 108
Target Start/End: Original strand, 24442789 - 24442821
Alignment:
Q  76 tgacttcagcacaagggttgtatttatagaact 108  Q
    ||||||||||||||||||| |||||||||||||    
T  24442789 tgacttcagcacaagggttctatttatagaact 24442821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 61; Significance: 6e-26; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 67 - 235
Target Start/End: Complemental strand, 19219417 - 19219251
Alignment:
Q  67 tgtgtcatctgacttcagcacaagggttgtatttatagaactacttgtgtgttctgcaagtcaagtaatcactactggacttatgtaagctcattaac-c 165  Q
    |||||||||||||||||||||||||||| ||||||||||||| |  |||||||||||||||| || | | |||| |||||||  |||||| ||||||| |    
T  19219417 tgtgtcatctgacttcagcacaagggttctatttatagaactccaagtgtgttctgcaagtc-agaatttactattggactttcgtaagcccattaactc 19219319  T
Q  166 cattagt-gttcactaactaattagcgttatttgctaaatgcacccaatcttataagtcttacttatattt 235  Q
      |||||  || ||||||||||||||||||||||||||| |||||||   |||||||||  ||||||||||    
T  19219318 gtttagtcttttactaactaattagcgttatttgctaaacgcaccca---ttataagtccaacttatattt 19219251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 178 - 332
Target Start/End: Original strand, 10358570 - 10358727
Alignment:
Q  178 ctaactaattagcgttatttgctaaatgcacccaatcttataagtcttacttatatttct-cattctgactgttatattgtg--tgaccatatatattct 274  Q
    |||||| ||||| ||||||||||||| ||||||| ||||||||||||||||||||||||| | || |||| ||| |||||||  ||||| ||||  ||||    
T  10358570 ctaactgattagtgttatttgctaaaggcaccca-tcttataagtcttacttatatttcttccttttgaccgttctattgtgcatgaccctataggttct 10358668  T
Q  275 tgtaatgttggcaataa-attaaattttatatttaatattatgaatagtgaacggtatc 332  Q
    ||||  |||| |||||| ||||||| |||||||||||||||| || |||||||||||||    
T  10358669 tgtatcgttgacaataatattaaatattatatttaatattataaacagtgaacggtatc 10358727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 78 - 129
Target Start/End: Complemental strand, 14075367 - 14075316
Alignment:
Q  78 acttcagcacaagggttgtatttatagaactacttgtgtgttctgcaagtca 129  Q
    |||||||||| |||||| ||||||||||||| ||||||||||||||||||||    
T  14075367 acttcagcactagggttctatttatagaactccttgtgtgttctgcaagtca 14075316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 178 - 260
Target Start/End: Original strand, 19734762 - 19734842
Alignment:
Q  178 ctaactaattagcgttatttgctaaatgcacccaatcttataagtcttacttatatttctcattctgactgttatattgtgtg 260  Q
    |||||||||||  ||||||||||||| |||||| ||| ||||| ||||||||||||||||| || |||||||| | |||||||    
T  19734762 ctaactaattaatgttatttgctaaacgcaccc-atcatataactcttacttatatttctc-ttttgactgttcttttgtgtg 19734842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 178 - 260
Target Start/End: Original strand, 19735037 - 19735117
Alignment:
Q  178 ctaactaattagcgttatttgctaaatgcacccaatcttataagtcttacttatatttctcattctgactgttatattgtgtg 260  Q
    |||||||||||  ||||||||||||| |||||| ||| ||||| ||||||||||||||||| || |||||||| | |||||||    
T  19735037 ctaactaattaatgttatttgctaaacgcaccc-atcatataactcttacttatatttctc-ttttgactgttcttttgtgtg 19735117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 79 - 156
Target Start/End: Complemental strand, 13194846 - 13194769
Alignment:
Q  79 cttcagcacaagggttgtatttatagaactacttgtgtgttctgcaagtcaagtaatcactactggacttatgtaagc 156  Q
    ||||||||||| |||| |||||||||||| ||||||||  | ||||||||||| ||||| || | | |||||||||||    
T  13194846 cttcagcacaaaggttctatttatagaaccacttgtgttctttgcaagtcaagcaatcattattaggcttatgtaagc 13194769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 78 - 129
Target Start/End: Complemental strand, 33317752 - 33317701
Alignment:
Q  78 acttcagcacaagggttgtatttatagaactacttgtgtgttctgcaagtca 129  Q
    |||||||||  |||||| ||||||||||||| |||||||| |||||||||||    
T  33317752 acttcagcaatagggttctatttatagaacttcttgtgtgctctgcaagtca 33317701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 178 - 260
Target Start/End: Complemental strand, 21995743 - 21995663
Alignment:
Q  178 ctaactaattagcgttatttgctaaatgcacccaatcttataagtcttacttatatttctcattctgactgttatattgtgtg 260  Q
    |||||||||||| |||| || ||||| ||||||| || ||||||||||| ||||||||||| || |||||||| | |||||||    
T  21995743 ctaactaattagtgttaatttctaaacgcaccca-tcatataagtcttatttatatttctc-ttttgactgttctcttgtgtg 21995663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 271 - 332
Target Start/End: Complemental strand, 28173305 - 28173246
Alignment:
Q  271 ttcttgtaatgttggcaataaattaaattttatatttaatattatgaatagtgaacggtatc 332  Q
    ||||||||| | || ||||||||||||||  ||||||||||||||||| ||||| |||||||    
T  28173305 ttcttgtaacggtgacaataaattaaatt--atatttaatattatgaacagtgagcggtatc 28173246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 76 - 141
Target Start/End: Original strand, 10358485 - 10358548
Alignment:
Q  76 tgacttcagcacaagggttgtatttatagaactacttgtgtgttctgcaagtcaagtaatcactac 141  Q
    |||||||| |||||| ||| ||||| |||||||||||||||| | |||||| ||||||||||||||    
T  10358485 tgacttcaacacaagagttctattt-tagaactacttgtgtgct-tgcaagccaagtaatcactac 10358548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 96 - 164
Target Start/End: Complemental strand, 4074265 - 4074198
Alignment:
Q  96 tatttatagaactacttgtgtgttctgcaagtcaagtaatcactactggacttatgtaagctcattaac 164  Q
    |||||||| ||||| ||||||| || | |||| |||||||||||| || |||| |||||||||||||||    
T  4074265 tatttata-aactatttgtgtgctccgtaagttaagtaatcactattgaacttctgtaagctcattaac 4074198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 59; Significance: 9e-25; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 178 - 324
Target Start/End: Complemental strand, 29801257 - 29801109
Alignment:
Q  178 ctaactaattagcgttatttgctaaatgcacccaatcttataagtcttacttatatttctcattctgactgttatat--tgtgtgaccatatatattctt 275  Q
    |||| ||||||| |||||||| |||| ||||||| |||||||||||||||||||||||||| || |||| ||| |||  ||||||| ||||||  |||||    
T  29801257 ctaaataattagtgttatttgttaaacgcaccca-tcttataagtcttacttatatttctccttttgaccgttctattgtgtgtgatcatataggttctt 29801159  T
Q  276 gtaatgttggcaataa-attaaattttatatttaatattatgaatagtga 324  Q
    || | ||||||||||| ||||||| |||||||||||||||| || |||||    
T  29801158 gtcacgttggcaataatattaaatcttatatttaatattataaacagtga 29801109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 179 - 260
Target Start/End: Original strand, 20686939 - 20687020
Alignment:
Q  179 taactaattagcgttatttgctaaatgcacccaatcttataagtcttacttatatttctcattctgactgttatattgtgtg 260  Q
    |||||||| | |||||||||||||| |||||| |  |||||||||||||||||||||||| || |||| ||| |||||||||    
T  20686939 taactaataaacgttatttgctaaacgcaccccaagttataagtcttacttatatttctccttttgaccgttctattgtgtg 20687020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 178 - 238
Target Start/End: Original strand, 24763189 - 24763248
Alignment:
Q  178 ctaactaattagcgttatttgctaaatgcacccaatcttataagtcttacttatatttctc 238  Q
    |||||||||||||||||||| |||||| ||||| ||| |||||||||||||||||||||||    
T  24763189 ctaactaattagcgttatttactaaatacaccc-atcatataagtcttacttatatttctc 24763248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 178 - 238
Target Start/End: Original strand, 15341559 - 15341618
Alignment:
Q  178 ctaactaattagcgttatttgctaaatgcacccaatcttataagtcttacttatatttctc 238  Q
    |||||||||||||||||| |||||||  |||||| |||||||||||||||||||| |||||    
T  15341559 ctaactaattagcgttatctgctaaacacaccca-tcttataagtcttacttatagttctc 15341618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 78 - 130
Target Start/End: Original strand, 24228629 - 24228681
Alignment:
Q  78 acttcagcacaagggttgtatttatagaactacttgtgtgttctgcaagtcaa 130  Q
    |||||||||| |||||| ||||||||||||| |||||||| ||||||||||||    
T  24228629 acttcagcactagggttctatttatagaactccttgtgtgctctgcaagtcaa 24228681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 78 - 129
Target Start/End: Original strand, 15341458 - 15341509
Alignment:
Q  78 acttcagcacaagggttgtatttatagaactacttgtgtgttctgcaagtca 129  Q
    ||||||||| ||||||| ||||||||||| | || |||||||||||||||||    
T  15341458 acttcagcataagggttctatttatagaattcctagtgtgttctgcaagtca 15341509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 74 - 129
Target Start/End: Complemental strand, 19617323 - 19617268
Alignment:
Q  74 tctgacttcagcacaagggttgtatttatagaactacttgtgtgttctgcaagtca 129  Q
    ||||||||||||||||| ||| ||||||||||||| |  ||||||| |||||||||    
T  19617323 tctgacttcagcacaagtgttctatttatagaacttcaagtgtgttatgcaagtca 19617268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 77 - 128
Target Start/End: Complemental strand, 37444054 - 37444003
Alignment:
Q  77 gacttcagcacaagggttgtatttatagaactacttgtgtgttctgcaagtc 128  Q
    ||||||||||||||||||  |||||||||||| || ||||| ||||||||||    
T  37444054 gacttcagcacaagggttcaatttatagaactcctagtgtgctctgcaagtc 37444003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 255 - 324
Target Start/End: Complemental strand, 36270947 - 36270877
Alignment:
Q  255 tgtgtgaccatatatattcttgtaatgttggcaataa-attaaattttatatttaatattatgaatagtga 324  Q
    ||||||||||| ||  |||| ||||||||| |||||| ||||||||  |||||||||||||| ||||||||    
T  36270947 tgtgtgaccatgtaggttctcgtaatgttgacaataatattaaattacatatttaatattataaatagtga 36270877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 77 - 130
Target Start/End: Original strand, 24763087 - 24763140
Alignment:
Q  77 gacttcagcacaagggttgtatttatagaactacttgtgtgttctgcaagtcaa 130  Q
    ||||||||||| |||||| ||||||||||||| || ||||| | ||||||||||    
T  24763087 gacttcagcaccagggttctatttatagaactcctagtgtgctttgcaagtcaa 24763140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 178 - 238
Target Start/End: Complemental strand, 19617218 - 19617159
Alignment:
Q  178 ctaactaattagcgttatttgctaaatgcacccaatcttataagtcttacttatatttctc 238  Q
    |||||||||||||||||||| ||||| | || | ||| |||||||| ||||||||||||||    
T  19617218 ctaactaattagcgttatttactaaacgtacac-atcatataagtcatacttatatttctc 19617159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 53; Significance: 3e-21; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 74 - 332
Target Start/End: Complemental strand, 26817182 - 26816921
Alignment:
Q  74 tctgacttcagcacaagggttgtatttatagaactacttgtgtgttctgcaagtcaagtaatcactactggacttatgtaagctcattaacccatt-agt 172  Q
    |||||||||| |||||||||| |||| |||||||| ||||||||||||| |||||| | || || || |||  ||  |||||| ||||||| |||| ||     
T  26817182 tctgacttcaacacaagggttctattgatagaactccttgtgtgttctgtaagtca-gaaaacattattgggattccgtaagcccattaacacatttagc 26817084  T
Q  173 gttcactaactaattagcgttatttgctaaatgcacccaatcttataagtcttacttata-tttctcattctgactgttatatt--gtgtgaccatatat 269  Q
     ||  |||||| |||| |||||||||||||| ||||||| |||||||||||||||||||| |||||| || |||  ||| ||||  |||||||| ||||     
T  26817083 atttgctaactgattaacgttatttgctaaacgcaccca-tcttataagtcttacttatattttctccttttgaacgttctattgcgtgtgaccctataa 26816985  T
Q  270 attcttgtaatgttggcaataa-attaaattttatatttaatattatgaatagtgaacggtatc 332  Q
     ||||||  | |||| ||| || ||||||| |||||||||||||||| || | ||| |||||||    
T  26816984 gttcttgccacgttgacaacaatattaaatcttatatttaatattataaacaatgagcggtatc 26816921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 76 - 315
Target Start/End: Complemental strand, 14147907 - 14147666
Alignment:
Q  76 tgacttcagcacaagggttgtatttatagaactacttgtgtgttctgcaagtcaagtaatcactactggacttatgtaagctcatt-aacccattagtg- 173  Q
    ||||||||||||||||||||||||||||||| | ||  |||| ||| |||||| || | |||||| ||  |||  |||||| |||| || |  ||||||     
T  14147907 tgacttcagcacaagggttgtatttatagaaatcctattgtgctctacaagtc-agaagtcactattgagcttccgtaagcccattaaatcgtttagtgt 14147809  T
Q  174 ttcactaactaattagcgttatttgctaaatgcacccaatcttataagtcttacttatatttctcattctgactgttatattgtg--tgaccatatatat 271  Q
    ||  ||||||||||| ||| |||||||||||| || | ||| |||| |||||||||||||||||| || |||  ||| | |||||  ||||| ||||| |    
T  14147808 tttgctaactaattaacgtgatttgctaaatgtacgc-atcatatatgtcttacttatatttctc-ttttgatcgttcttttgtgattgaccctatatgt 14147711  T
Q  272 tcttgtaatgttggcaataa-attaaattttatatttaatattat 315  Q
    ||| || | |||| |||||| ||||||||| ||||||||||||||    
T  14147710 tctagtcacgttgacaataatattaaatttaatatttaatattat 14147666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 178 - 332
Target Start/End: Original strand, 15316693 - 15316848
Alignment:
Q  178 ctaactaattagcgttatttgctaaatgcacccaatcttataagtcttact--tatatttctcattctgactgttatat-tgtgtgaccatatatattct 274  Q
    ||||||||||| |||||||| ||||||||||||  |  |||||||| ||||  |||||||||| || |||||||| | | ||||||||| ||||  ||||    
T  15316693 ctaactaattaacgttatttactaaatgcaccc--ttatataagtcatacttatatatttctc-ttttgactgttctttgtgtgtgaccctataggttct 15316789  T
Q  275 tgtaatgttggcaataa-attaaattttatatttaatattatgaatagtgaacggtatc 332  Q
     || | ||||||||||| ||||||| | |||||||||| ||| |||| ||| |||||||    
T  15316790 agtcacgttggcaataatattaaatctaatatttaatactataaataatgagcggtatc 15316848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 78 - 129
Target Start/End: Complemental strand, 21399681 - 21399630
Alignment:
Q  78 acttcagcacaagggttgtatttatagaactacttgtgtgttctgcaagtca 129  Q
    |||||||||| |||||| ||||||||||||| |||||||| | |||||||||    
T  21399681 acttcagcactagggttctatttatagaactccttgtgtgctatgcaagtca 21399630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 78 - 129
Target Start/End: Original strand, 25978142 - 25978193
Alignment:
Q  78 acttcagcacaagggttgtatttatagaactacttgtgtgttctgcaagtca 129  Q
    |||||||||  |||||| ||||||||||||| |||||||| |||||||||||    
T  25978142 acttcagcattagggttctatttatagaactccttgtgtgctctgcaagtca 25978193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 79 - 117
Target Start/End: Original strand, 23014553 - 23014591
Alignment:
Q  79 cttcagcacaagggttgtatttatagaactacttgtgtg 117  Q
    |||||||||||||||| |||||||||||| |||||||||    
T  23014553 cttcagcacaagggttctatttatagaaccacttgtgtg 23014591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 46; Significance: 5e-17; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 78 - 195
Target Start/End: Original strand, 28719120 - 28719237
Alignment:
Q  78 acttcagcacaagggttgtatttatagaactacttgtgtgttctgcaagtcaagtaatcactactggacttatgtaagctcattaacccattagtgttca 177  Q
    |||||| |||||| ||| |||||||||||||||||||||| |||||||  ||||||||||||| ||| |||   ||||| | ||||||||||||  ||      
T  28719120 acttcaacacaagagttctatttatagaactacttgtgtgctctgcaaaccaagtaatcactattgggcttcaataagcccgttaacccattagcattat 28719219  T
Q  178 ctaactaattagcgttat 195  Q
    |||||||||| |||||||    
T  28719220 ctaactaattcgcgttat 28719237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 77 - 129
Target Start/End: Complemental strand, 39428327 - 39428275
Alignment:
Q  77 gacttcagcacaagggttgtatttatagaactacttgtgtgttctgcaagtca 129  Q
    ||||||||||| |||||| ||||||||||||| ||||||||||||||||||||    
T  39428327 gacttcagcaccagggttctatttatagaactccttgtgtgttctgcaagtca 39428275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 78 - 129
Target Start/End: Complemental strand, 31097703 - 31097652
Alignment:
Q  78 acttcagcacaagggttgtatttatagaactacttgtgtgttctgcaagtca 129  Q
    |||||||||| |||||| ||||||||||||| |||||||||| |||||||||    
T  31097703 acttcagcactagggttctatttatagaacttcttgtgtgttatgcaagtca 31097652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 80 - 143
Target Start/End: Original strand, 31651202 - 31651265
Alignment:
Q  80 ttcagcacaagggttgtatttatagaactacttgtgtgttctgcaagtcaagtaatcactactg 143  Q
    |||||||||| |||| |||||||||||| | ||||||| |||| |||||||  |||||||||||    
T  31651202 ttcagcacaatggttctatttatagaacaatttgtgtgctctgtaagtcaaacaatcactactg 31651265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 74 - 129
Target Start/End: Complemental strand, 39536072 - 39536017
Alignment:
Q  74 tctgacttcagcacaagggttgtatttatagaactacttgtgtgttctgcaagtca 129  Q
    ||||||||||||||||||||| ||||||||||||| |  ||||| | |||||||||    
T  39536072 tctgacttcagcacaagggttctatttatagaactccaagtgtgctatgcaagtca 39536017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 178 - 235
Target Start/End: Original strand, 20099820 - 20099876
Alignment:
Q  178 ctaactaattagcgttatttgctaaatgcacccaatcttataagtcttacttatattt 235  Q
    |||||||||||| ||||||||||||||| | || ||  ||||||||||||||||||||    
T  20099820 ctaactaattagtgttatttgctaaatgtatcc-ataatataagtcttacttatattt 20099876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 89 - 129
Target Start/End: Original strand, 9811159 - 9811199
Alignment:
Q  89 agggttgtatttatagaactacttgtgtgttctgcaagtca 129  Q
    |||||| ||||||||||||| |||||||| |||||||||||    
T  9811159 agggttctatttatagaactccttgtgtgctctgcaagtca 9811199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 89 - 129
Target Start/End: Original strand, 12703400 - 12703440
Alignment:
Q  89 agggttgtatttatagaactacttgtgtgttctgcaagtca 129  Q
    |||||| ||||||||||||| |||||||| |||||||||||    
T  12703400 agggttctatttatagaactccttgtgtgctctgcaagtca 12703440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 89 - 129
Target Start/End: Original strand, 12764416 - 12764456
Alignment:
Q  89 agggttgtatttatagaactacttgtgtgttctgcaagtca 129  Q
    |||||| ||||||||||||| |||||||| |||||||||||    
T  12764416 agggttctatttatagaactccttgtgtgctctgcaagtca 12764456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 81 - 129
Target Start/End: Original strand, 25804803 - 25804851
Alignment:
Q  81 tcagcacaagggttgtatttatagaactacttgtgtgttctgcaagtca 129  Q
    ||||||| |||||| ||||||||||||| |||||||| | |||||||||    
T  25804803 tcagcactagggttctatttatagaactccttgtgtgctatgcaagtca 25804851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 78 - 167
Target Start/End: Complemental strand, 35132794 - 35132705
Alignment:
Q  78 acttcagcacaagggttgtatttatagaactacttgtgtgttctgcaagtcaagtaatcactactggacttatgtaagctcattaaccca 167  Q
    |||||| |||||||||| |||||||| ||  | ||| ||  ||||||||||||| |||||||||||| ||||||||||| ||||||||||    
T  35132794 acttcatcacaagggttctatttataaaatcatttgcgttctctgcaagtcaagcaatcactactgggcttatgtaagcccattaaccca 35132705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 80 - 169
Target Start/End: Original strand, 9916012 - 9916100
Alignment:
Q  80 ttcagcacaagggttgtatttatagaactacttgtgtgttctgcaagtcaagtaatcactactggacttatgtaagctcattaacccatt 169  Q
    ||||||||||||||| |||| ||||||| ||||||||| ||||||||||||| | |||||| ||   |||||||||| || |||||||||    
T  9916012 ttcagcacaagggttctatt-atagaaccacttgtgtgctctgcaagtcaagcagtcactattgagattatgtaagcccaataacccatt 9916100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 86 - 165
Target Start/End: Original strand, 31234170 - 31234249
Alignment:
Q  86 acaagggttgtatttatagaactacttgtgtgttctgcaagtcaagtaatcactactggacttatgtaagctcattaacc 165  Q
    ||||||||| ||||||| |||| ||||||||| |||||||||||| || ||| ||||   |||||||||||||| |||||    
T  31234170 acaagggttttatttattgaacaacttgtgtgctctgcaagtcaaatagtcattactaagcttatgtaagctcaataacc 31234249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 271 - 331
Target Start/End: Complemental strand, 16069729 - 16069669
Alignment:
Q  271 ttcttgtaatgttggcaataaattaaattttatatttaatattatgaatagtgaacggtat 331  Q
    ||||| ||||||||  |||| |||||||| ||||||||||||||| |||||||| ||||||    
T  16069729 ttcttctaatgttgataatatattaaattgtatatttaatattataaatagtgagcggtat 16069669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 78 - 129
Target Start/End: Original strand, 28134138 - 28134189
Alignment:
Q  78 acttcagcacaagggttgtatttatagaactacttgtgtgttctgcaagtca 129  Q
    |||||||||| |||||| ||||||||||||| |||||||| | |||||||||    
T  28134138 acttcagcactagggttctatttatagaactccttgtgtgctatgcaagtca 28134189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 80 - 129
Target Start/End: Original strand, 43801782 - 43801831
Alignment:
Q  80 ttcagcacaagggttgtatttatagaactacttgtgtgttctgcaagtca 129  Q
    |||||||| |||||| ||||||||||||| |||||||| | |||||||||    
T  43801782 ttcagcactagggttctatttatagaactccttgtgtgctatgcaagtca 43801831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0023 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold0023
Description:

Target: scaffold0023; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 74 - 129
Target Start/End: Original strand, 108536 - 108591
Alignment:
Q  74 tctgacttcagcacaagggttgtatttatagaactacttgtgtgttctgcaagtca 129  Q
    ||||||||||||||||||||| ||||||||||||| ||| |||||| || ||||||    
T  108536 tctgacttcagcacaagggttctatttatagaactccttatgtgttatgtaagtca 108591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0111 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0111
Description:

Target: scaffold0111; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 78 - 129
Target Start/End: Complemental strand, 27426 - 27375
Alignment:
Q  78 acttcagcacaagggttgtatttatagaactacttgtgtgttctgcaagtca 129  Q
    ||||||||||||||||| ||||||||||| | || ||||| |||||||||||    
T  27426 acttcagcacaagggttctatttatagaaattctagtgtgctctgcaagtca 27375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 78 - 129
Target Start/End: Original strand, 138123 - 138174
Alignment:
Q  78 acttcagcacaagggttgtatttatagaactacttgtgtgttctgcaagtca 129  Q
    |||||||||| |||||| ||||||||||||| |||||||| | |||||||||    
T  138123 acttcagcactagggttctatttatagaactccttgtgtgctatgcaagtca 138174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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