View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2695_low_7 (Length: 446)
Name: NF2695_low_7
Description: NF2695
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2695_low_7 |
 | |
|
| [»] scaffold0554 (1 HSPs) |
| | |
|
| [»] scaffold0059 (2 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 393; Significance: 0; HSPs: 13)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 1 - 433
Target Start/End: Complemental strand, 23017492 - 23017060
Alignment:
| Q |
1 |
acttctcaggacattttcgctggtggaggtgagacatcagcaagcaccatagattgggcaatgatagaaatgataaggaatccaagaataatgaagaaag |
100 |
Q |
| |
|
|||| |||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23017492 |
acttttcaggacattttcggtggtggaggtgagacatcagcaagcaccacagattgggcaatgatagaaatgataaggaatccaagaataatgaagaaag |
23017393 |
T |
|
| Q |
101 |
cacaagatgaagtgagggaggttttaaaaatgaaagaacgggttgatgaaaaatgcatcaatgaactcagttatctgaaatcagttgtcaaagaaaccct |
200 |
Q |
| |
|
||||||||||||||||||| ||| |||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23017392 |
cacaagatgaagtgagggatgttataaaaatgaaaggacgggttgatgaaaaatgcataaatgaactcagttatctgaaatcagttgtcaaagaaaccct |
23017293 |
T |
|
| Q |
201 |
tagattacatccttcagtacctcttttgctaccaagagaatgtggtaaagcatgtgagatacatggttatcacataccagttaagacgaaggtgataatt |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
23017292 |
tagattacatccttcagtacctcttttgctaccaagagaatgtggtaaagcatgtgagatacatggttatcacataccagttaagactaaggtgataatt |
23017193 |
T |
|
| Q |
301 |
aatgcttgggcaatcgcaagagatccaaactactggactgaaccagagaagttttatccagagagattcattgacagcggtattgactataaagggagta |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
23017192 |
aatgcttgggcaatcgcaagagatccaaactactggactgaaccagagaagttttatccagagagattcattgacaacggtattgactataaagggagta |
23017093 |
T |
|
| Q |
401 |
acttcgaatacattccttttggtgctggaagaa |
433 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| |
|
|
| T |
23017092 |
acttcgaatacattccttttggtggtggaagaa |
23017060 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 7 - 433
Target Start/End: Complemental strand, 23146344 - 23145918
Alignment:
| Q |
7 |
caggacattttcgctggtggaggtgagacatcagcaagcaccatagattgggcaatgatagaaatgataaggaatccaagaataatgaagaaagcacaag |
106 |
Q |
| |
|
||||||||||| |||| |||||||||||||||||||||||||||||||||||||||| ||||| || ||| | |||||||||| |||||||||||||||| |
|
|
| T |
23146344 |
caggacatttttgctgctggaggtgagacatcagcaagcaccatagattgggcaatggtagaattggtaaaggatccaagaatcatgaagaaagcacaag |
23146245 |
T |
|
| Q |
107 |
atgaagtgagggaggttttaaaaatgaaagaacgggttgatgaaaaatgcatcaatgaactcagttatctgaaatcagttgtcaaagaaacccttagatt |
206 |
Q |
| |
|
|||| ||||| |||||||| |||||||||| | ||||||||||||| |||||||||||||||| |||| |||||| |||||||||||||||| | || | |
|
|
| T |
23146244 |
atgaggtgagagaggttttcaaaatgaaaggaagggttgatgaaaattgcatcaatgaactcaattatttgaaattagttgtcaaagaaaccttaaggct |
23146145 |
T |
|
| Q |
207 |
acatccttcagtacctcttttgctaccaagagaatgtggtaaagcatgtgagatacatggttatcacataccagttaagacgaaggtgataattaatgct |
306 |
Q |
| |
|
||| ||| ||| |||||||||| |||| ||||||||| || ||| |||||| ||| |||||||||||||||| ||||||| |||||| || | |||||| |
|
|
| T |
23146144 |
acaccctccagcacctcttttgttaccgagagaatgtagtcaagaatgtgatataaatggttatcacataccgattaagactaaggtgttagtcaatgct |
23146045 |
T |
|
| Q |
307 |
tgggcaatcgcaagagatccaaactactggactgaaccagagaagttttatccagagagattcattgacagcggtattgactataaagggagtaacttcg |
406 |
Q |
| |
|
|||||| | |||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||| |||||||||||||||||||||||| | |
|
|
| T |
23146044 |
tgggcagttgcaagagatccaaactactggactgaaccagagaggttttatccagagagattcatcgacagcgatattgactataaagggagtaactttg |
23145945 |
T |
|
| Q |
407 |
aatacattccttttggtgctggaagaa |
433 |
Q |
| |
|
| ||||||||||||||||||||||||| |
|
|
| T |
23145944 |
agtacattccttttggtgctggaagaa |
23145918 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 6 - 433
Target Start/End: Complemental strand, 23149183 - 23148756
Alignment:
| Q |
6 |
tcaggacattttcgctggtggaggtgagacatcagcaagcaccatagattgggcaatgatagaaatgataaggaatccaagaataatgaagaaagcacaa |
105 |
Q |
| |
|
|||||||||||| | || |||||| ||||||||||||||||||||||||||||||||| |||| ||| ||| | |||||||||||||||||||||||||| |
|
|
| T |
23149183 |
tcaggacatttttggtgctggaggcgagacatcagcaagcaccatagattgggcaatggtagagatggtaaaggatccaagaataatgaagaaagcacaa |
23149084 |
T |
|
| Q |
106 |
gatgaagtgagggaggttttaaaaatgaaagaacgggttgatgaaaaatgcatcaatgaactcagttatctgaaatcagttgtcaaagaaacccttagat |
205 |
Q |
| |
|
||||| ||||| |||||||| |||||||||| | |||||||||||| |||||||||||||||| |||| |||||| |||||||||||||||| | || |
|
|
| T |
23149083 |
gatgaggtgagagaggttttcaaaatgaaaggaaaggttgatgaaaattgcatcaatgaactcaattatttgaaattagttgtcaaagaaaccttaaggc |
23148984 |
T |
|
| Q |
206 |
tacatccttcagtacctcttttgctaccaagagaatgtggtaaagcatgtgagatacatggttatcacataccagttaagacgaaggtgataattaatgc |
305 |
Q |
| |
|
|||| ||| | | |||||||||| |||| ||||||||| || |||| ||||| ||| ||||||||||||| || ||||||| || |||||||| ||||| |
|
|
| T |
23148983 |
tacaccctccggcacctcttttgttaccgagagaatgtagtcaagcgtgtgatataaatggttatcacattccgattaagactaaagtgataatcaatgc |
23148884 |
T |
|
| Q |
306 |
ttgggcaatcgcaagagatccaaactactggactgaaccagagaagttttatccagagagattcattgacagcggtattgactataaagggagtaacttc |
405 |
Q |
| |
|
||||||||| ||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||| |||| ||||||||||||||||||||||||| |
|
|
| T |
23148883 |
ttgggcaattgcaagagattcaaactactggactgaaccagagaggttttatccagagagattcattgaaagcgatattgactataaagggagtaacttc |
23148784 |
T |
|
| Q |
406 |
gaatacattccttttggtgctggaagaa |
433 |
Q |
| |
|
|| ||||||||||||||||| ||||||| |
|
|
| T |
23148783 |
gagtacattccttttggtgccggaagaa |
23148756 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 1 - 433
Target Start/End: Complemental strand, 23039471 - 23039039
Alignment:
| Q |
1 |
acttctcaggacattttcgctggtggaggtgagacatcagcaagcaccatagattgggcaatgatagaaatgataaggaatccaagaataatgaagaaag |
100 |
Q |
| |
|
|||| ||||||| |||| | || |||||||||||||||||||||||||||||| ||||||||| |||||||||||||| ||||||||||||||||||||| |
|
|
| T |
23039471 |
acttttcaggacgtttttggtgctggaggtgagacatcagcaagcaccatagactgggcaatggtagaaatgataagggatccaagaataatgaagaaag |
23039372 |
T |
|
| Q |
101 |
cacaagatgaagtgagggaggttttaaaaatgaaagaacgggttgatgaaaaatgcatcaatgaactcagttatctgaaatcagttgtcaaagaaaccct |
200 |
Q |
| |
|
| |||||||| ||||| |||||||| |||||||||| | ||||||||||||| |||||||||||||||| |||| |||| |||||||||||||||||||| |
|
|
| T |
23039371 |
cgcaagatgaggtgagagaggttttcaaaatgaaaggaagggttgatgaaaattgcatcaatgaactcaattatttgaagtcagttgtcaaagaaaccct |
23039272 |
T |
|
| Q |
201 |
tagattacatccttcagtacctcttttgctaccaagagaatgtggtaaagcatgtgagatacatggttatcacataccagttaagacgaaggtgataatt |
300 |
Q |
| |
|
|| ||||| ||| || |||||||||||| |||||||||||| || || ||||||||||| |||||||||||||||| |||||| ||||||||| | |
|
|
| T |
23039271 |
gaggttacaccctccaacacctcttttgctgccaagagaatgtcgtcaaacatgtgagataaatggttatcacatacctattaagagtaaggtgatagtc |
23039172 |
T |
|
| Q |
301 |
aatgcttgggcaatcgcaagagatccaaactactggactgaaccagagaagttttatccagagagattcattgacagcggtattgactataaagggagta |
400 |
Q |
| |
|
|||||||||||||| |||||||||||||| ||||||||||| || |||| |||||||||||||||||| ||||||||| |||||||||||||| |||| |
|
|
| T |
23039171 |
aatgcttgggcaattgcaagagatccaaattactggactgagccggagagattttatccagagagattccttgacagcgccattgactataaaggaagta |
23039072 |
T |
|
| Q |
401 |
acttcgaatacattccttttggtgctggaagaa |
433 |
Q |
| |
|
| | || ||||||||||||||||| ||||||| |
|
|
| T |
23039071 |
attatgagtacattccttttggtgccggaagaa |
23039039 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 433
Target Start/End: Complemental strand, 23036600 - 23036168
Alignment:
| Q |
1 |
acttctcaggacattttcgctggtggaggtgagacatcagcaagcaccatagattgggcaatgatagaaatgataaggaatccaagaataatgaagaaag |
100 |
Q |
| |
|
|||| |||||||||||| | || |||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||| |
|
|
| T |
23036600 |
acttttcaggacatttttggtgctggaggtgagacatcagcaagcaccatagattgggcaatggcagaaatggtaaggaatccaagaataatgaagaaag |
23036501 |
T |
|
| Q |
101 |
cacaagatgaagtgagggaggttttaaaaatgaaagaacgggttgatgaaaaatgcatcaatgaactcagttatctgaaatcagttgtcaaagaaaccct |
200 |
Q |
| |
|
|||||| ||| ||||| |||||||| |||||||||| | |||| || || || || ||||| ||||||| |||| |||||||||| |||||||||||||| |
|
|
| T |
23036500 |
cacaagctgaggtgagagaggttttcaaaatgaaaggaagggtcgaagagaattgtatcaacgaactcatttatttgaaatcagtcgtcaaagaaaccct |
23036401 |
T |
|
| Q |
201 |
tagattacatccttcagtacctcttttgctaccaagagaatgtggtaaagcatgtgagatacatggttatcacataccagttaagacgaaggtgataatt |
300 |
Q |
| |
|
|| ||||| ||| || ||||||||||||||||||||| |||| | ||||||||| |||| |||||||||||||||| |||||| ||||| | ||| |
|
|
| T |
23036400 |
gaggttacaccctccaacacctcttttgctaccaagagagtgtgttcaagcatgtgtgataaatggttatcacatacctattaagagtaaggtaacaata |
23036301 |
T |
|
| Q |
301 |
aatgcttgggcaatcgcaagagatccaaactactggactgaaccagagaagttttatccagagagattcattgacagcggtattgactataaagggagta |
400 |
Q |
| |
|
|||||||||||||| |||||||||||||| ||||||||||||||||||| |||||||| ||||||||||| ||||||| ||||||||| |||||||||| |
|
|
| T |
23036300 |
aatgcttgggcaattgcaagagatccaaattactggactgaaccagagagattttatcccgagagattcatcgacagcgctattgactacaaagggagta |
23036201 |
T |
|
| Q |
401 |
acttcgaatacattccttttggtgctggaagaa |
433 |
Q |
| |
|
|||| || ||||||||||||||||| ||||||| |
|
|
| T |
23036200 |
actttgagtacattccttttggtgccggaagaa |
23036168 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 6 - 425
Target Start/End: Complemental strand, 23140471 - 23140052
Alignment:
| Q |
6 |
tcaggacattttcgctggtggaggtgagacatcagcaagcaccatagattgggcaatgatagaaatgataaggaatccaagaataatgaagaaagcacaa |
105 |
Q |
| |
|
|||||||||||| | || |||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||| ||| |
|
|
| T |
23140471 |
tcaggacatttttggtgctggaggtgagacatcagcaagcaccatagattgggcaatggtagaaatgataagggatccaagaataatgaagaaagtgcaa |
23140372 |
T |
|
| Q |
106 |
gatgaagtgagggaggttttaaaaatgaaagaacgggttgatgaaaaatgcatcaatgaactcagttatctgaaatcagttgtcaaagaaacccttagat |
205 |
Q |
| |
|
||||| ||||| |||||||| |||||||||| | ||||||||||||| |||||||| || ||| |||| |||||||| | |||||||||||| | || | |
|
|
| T |
23140371 |
gatgaggtgagagaggttttcaaaatgaaaggaagggttgatgaaaattgcatcaacgagctccattatttgaaatcaatcgtcaaagaaaccttgaggt |
23140272 |
T |
|
| Q |
206 |
tacatccttcagtacctcttttgctaccaagagaatgtggtaaagcatgtgagatacatggttatcacataccagttaagacgaaggtgataattaatgc |
305 |
Q |
| |
|
|||| || | || |||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||| ||||||| |||||| | | ||||| |
|
|
| T |
23140271 |
tacacactccggtgcctcttttgctaccaagagagtgtggtcaagcatgtgagatacatggttatcacataccatttaagactaaggtggtcgtcaatgc |
23140172 |
T |
|
| Q |
306 |
ttgggcaatcgcaagagatccaaactactggactgaaccagagaagttttatccagagagattcattgacagcggtattgactataaagggagtaacttc |
405 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||| | | | ||||||||||||||||||| | || |
|
|
| T |
23140171 |
atgggcaatcgcgagagatccaaactactggactgaaccagagaaattttatccagagagattcatgggaaacactattgactataaagggagtgatttt |
23140072 |
T |
|
| Q |
406 |
gaatacattccttttggtgc |
425 |
Q |
| |
|
|| ||||||||||||||||| |
|
|
| T |
23140071 |
gagtacattccttttggtgc |
23140052 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 6 - 425
Target Start/End: Complemental strand, 23024697 - 23024278
Alignment:
| Q |
6 |
tcaggacattttcgctggtggaggtgagacatcagcaagcaccatagattgggcaatgatagaaatgataaggaatccaagaataatgaagaaagcacaa |
105 |
Q |
| |
|
|||||||||||| | || |||||||||||||||||||||||||||||||||||||||| ||||||| ||| |||||||||||||||||||||||||||| |
|
|
| T |
23024697 |
tcaggacatttttggtgctggaggtgagacatcagcaagcaccatagattgggcaatggcagaaatggtaaagaatccaagaataatgaagaaagcacaa |
23024598 |
T |
|
| Q |
106 |
gatgaagtgagggaggttttaaaaatgaaagaacgggttgatgaaaaatgcatcaatgaactcagttatctgaaatcagttgtcaaagaaacccttagat |
205 |
Q |
| |
|
| ||| ||| | ||| |||| || ||||||| | ||||||| || || || ||||||||||| | |||| |||||||| |||||||||||||||| || | |
|
|
| T |
23024597 |
gctgaggtgcgagagattttcaatatgaaaggaagggttgaagagaattgtatcaatgaacttaattatttgaaatcaattgtcaaagaaaccctgaggt |
23024498 |
T |
|
| Q |
206 |
tacatccttcagtacctcttttgctaccaagagaatgtggtaaagcatgtgagatacatggttatcacataccagttaagacgaaggtgataattaatgc |
305 |
Q |
| |
|
|||| ||| | | ||| ||||| |||| |||||||||| | || ||||| ||||| | |||||| |||| ||| |||||| ||||||||| | ||||| |
|
|
| T |
23024497 |
tacaccctccggcaccacttttaataccgagagaatgtgctcaatcatgtaagatagacggttatgacattccaactaagactaaggtgatagtcaatgc |
23024398 |
T |
|
| Q |
306 |
ttgggcaatcgcaagagatccaaactactggactgaaccagagaagttttatccagagagattcattgacagcggtattgactataaagggagtaacttc |
405 |
Q |
| |
|
||||||||| |||||||||||||| |||||||| |||||||||| ||||||||||||||||||||| || || | |||||||||||||||||||||||| |
|
|
| T |
23024397 |
ttgggcaattgcaagagatccaaattactggaccgaaccagagaggttttatccagagagattcatcgatagtgatattgactataaagggagtaacttt |
23024298 |
T |
|
| Q |
406 |
gaatacattccttttggtgc |
425 |
Q |
| |
|
|| || |||||||||||||| |
|
|
| T |
23024297 |
gagtatattccttttggtgc |
23024278 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 433
Target Start/End: Complemental strand, 23033129 - 23032712
Alignment:
| Q |
1 |
acttctcaggacattttcgctggtggaggtgagacatcagcaagcaccatagattgggcaatgatagaaatgataaggaatccaagaataatgaagaaag |
100 |
Q |
| |
|
|||| |||||||||||| | || |||||| ||||||||||||||||||||||||||||| |||| |||||||||||| ||| | ||||||||||||||| |
|
|
| T |
23033129 |
acttttcaggacatttttggtgctggaggcgagacatcagcaagcaccatagattgggcgatgacagaaatgataagagatcaacgaataatgaagaaag |
23033030 |
T |
|
| Q |
101 |
cacaagatgaagtgagggaggttttaaaaatgaaagaacgggttgatgaaaaatgcatcaatgaactcagttatctgaaatcagttgtcaaagaaaccct |
200 |
Q |
| |
|
|||||| ||| ||||| |||||||| |||||||||| | |||||||||||| | |||| || |||| |||| |||||||||| |||||||||||||| |
|
|
| T |
23033029 |
cacaagctgaggtgagagaggttttcaaaatgaaaggaaaggttgatgaaaattacatccccgatctcaattatttgaaatcagtcgtcaaagaaaccct |
23032930 |
T |
|
| Q |
201 |
tagattacatccttcagtacctcttttgctaccaagagaatgtggtaaagcatgtgagatacatggttatcacataccagttaagacgaaggtgataatt |
300 |
Q |
| |
|
||| || || ||| |||||||||||||||||||||||||||| ||| |||||||||||||| ||||||||||||||||| |||| | ||||||||| | |
|
|
| T |
23032929 |
taggttccaccctacagtacctcttttgctaccaagagaatgcggtcaagcatgtgagataaatggttatcacataccaattaaaagtaaggtgatagtc |
23032830 |
T |
|
| Q |
301 |
aatgcttgggcaatcgcaagagatccaaactactggactgaaccagagaagttttatccagagagattcattgacagcggtattgactataaagggagta |
400 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||| ||||||||||| ||||||| ||||||||||||||| |||| |
|
|
| T |
23032829 |
aatgcttgggcaattgcaagagatccaaactactggactgaacca---------------gagagattcatcgacagcgctattgactataaaggaagta |
23032745 |
T |
|
| Q |
401 |
acttcgaatacattccttttggtgctggaagaa |
433 |
Q |
| |
|
| || || |||||||| |||||||| ||||||| |
|
|
| T |
23032744 |
attttgagtacattccctttggtgccggaagaa |
23032712 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 248 - 374
Target Start/End: Complemental strand, 22946587 - 22946461
Alignment:
| Q |
248 |
aagcatgtgagatacatggttatcacataccagttaagacgaaggtgataattaatgcttgggcaatcgcaagagatccaaactactggactgaaccaga |
347 |
Q |
| |
|
||||||||||||| ||||||||||||||||| | || | | ||||||||| |||||||||||||| | ||| |||||||| || |||||||| ||||| |
|
|
| T |
22946587 |
aagcatgtgagattgatggttatcacataccaatcaatagtagggtgataatcaatgcttgggcaattggaagggatccaaaatattggactgatccaga |
22946488 |
T |
|
| Q |
348 |
gaagttttatccagagagattcattga |
374 |
Q |
| |
|
||||||||||| || ||||| ||||| |
|
|
| T |
22946487 |
taagttttatcctgaaagatttattga |
22946461 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 248 - 374
Target Start/End: Complemental strand, 22972134 - 22972008
Alignment:
| Q |
248 |
aagcatgtgagatacatggttatcacataccagttaagacgaaggtgataattaatgcttgggcaatcgcaagagatccaaactactggactgaaccaga |
347 |
Q |
| |
|
|||| |||||||| ||||||||||||||||| | || | | ||||||||| |||||||||||||| | ||| |||||||| || |||||||| ||||| |
|
|
| T |
22972134 |
aagcttgtgagattgatggttatcacataccaatcaaaagtagggtgataatcaatgcttgggcaattggaagggatccaaaatattggactgatccaga |
22972035 |
T |
|
| Q |
348 |
gaagttttatccagagagattcattga |
374 |
Q |
| |
|
||||||||||| || ||||| ||||| |
|
|
| T |
22972034 |
taagttttatcctgaaagatttattga |
22972008 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 224 - 433
Target Start/End: Complemental strand, 22832042 - 22831833
Alignment:
| Q |
224 |
ttttgctaccaagagaatgtggtaaagcatgtgagatacatggttatcacataccagttaagacgaaggtgataattaatgcttgggcaatcgcaagaga |
323 |
Q |
| |
|
||||||| |||||||||||||| ||||||||||||||| |||| ||| | ||||| |||| | || |||||| | ||||||||||| || | |||||| |
|
|
| T |
22832042 |
ttttgcttccaagagaatgtggaaaagcatgtgagataaatgggtatgatataccttttaaaagcaaagtgatagtgaatgcttgggctattggaagaga |
22831943 |
T |
|
| Q |
324 |
tccaaactactggactgaaccagagaagttttatccagagagattcattgacagcggtattgactataaagggagtaacttcgaatacattccttttggt |
423 |
Q |
| |
|
|||||| | ||| || ||||| | |||||||| || ||||||||||| || || | |||||||| || | ||| || || | ||||||||||||| |
|
|
| T |
22831942 |
tccaaatcattgggacgacccagaaagattttatcctgaaagattcattgatagttgtgtggactataagggtaataattttgagttcattccttttggt |
22831843 |
T |
|
| Q |
424 |
gctggaagaa |
433 |
Q |
| |
|
||||| |||| |
|
|
| T |
22831842 |
gctggtagaa |
22831833 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 253 - 374
Target Start/End: Complemental strand, 22919252 - 22919131
Alignment:
| Q |
253 |
tgtgagatacatggttatcacataccagttaagacgaaggtgataattaatgcttgggcaatcgcaagagatccaaactactggactgaaccagagaagt |
352 |
Q |
| |
|
||||| ||| |||| ||| | ||||||| |||||| || || ||| ||||||| | ||||| | || |||||||||||||||| |||||| |||| | |
|
|
| T |
22919252 |
tgtgaaataaatggatatgaaataccagctaagactaaagtcatagttaatgcgtctgcaattggaatggatccaaactactggaatgaaccgaagaaat |
22919153 |
T |
|
| Q |
353 |
tttatccagagagattcattga |
374 |
Q |
| |
|
|||||||||| || |||||||| |
|
|
| T |
22919152 |
tttatccagaaaggttcattga |
22919131 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 224 - 329
Target Start/End: Original strand, 22941367 - 22941472
Alignment:
| Q |
224 |
ttttgctaccaagagaatgtggtaaagcatgtgagatacatggttatcacataccagttaagacgaaggtgataattaatgcttgggcaatcgcaagaga |
323 |
Q |
| |
|
||||||| |||||||||||||| |||||||||| ||| |||| ||| | ||||| |||| | || |||||| | ||||||||||| || | |||||| |
|
|
| T |
22941367 |
ttttgcttccaagagaatgtggacaagcatgtgaaataaatgggtatgatataccttttaaaagcaaagtgatagtgaatgcttgggccattggaagaga |
22941466 |
T |
|
| Q |
324 |
tccaaa |
329 |
Q |
| |
|
|||||| |
|
|
| T |
22941467 |
tccaaa |
22941472 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 1 - 433
Target Start/End: Complemental strand, 21780243 - 21779811
Alignment:
| Q |
1 |
acttctcaggacattttcgctggtggaggtgagacatcagcaagcaccatagattgggcaatgatagaaatgataaggaatccaagaataatgaagaaag |
100 |
Q |
| |
|
|||| ||||||||| || | || |||||||||||||||||||||||||||||||||||||||| |||||||| ||||| ||||||||||||||||||||| |
|
|
| T |
21780243 |
acttttcaggacatgtttggtgctggaggtgagacatcagcaagcaccatagattgggcaatggtagaaatggtaagggatccaagaataatgaagaaag |
21780144 |
T |
|
| Q |
101 |
cacaagatgaagtgagggaggttttaaaaatgaaagaacgggttgatgaaaaatgcatcaatgaactcagttatctgaaatcagttgtcaaagaaaccct |
200 |
Q |
| |
|
|||||||||||||||| || ||||| |||||||||| | ||||||||||||| |||||||||||||||| |||| ||||||||||||||||||||||| | |
|
|
| T |
21780143 |
cacaagatgaagtgagagaagttttcaaaatgaaaggaagggttgatgaaaattgcatcaatgaactcaattatttgaaatcagttgtcaaagaaacctt |
21780044 |
T |
|
| Q |
201 |
tagattacatccttcagtacctcttttgctaccaagagaatgtggtaaagcatgtgagatacatggttatcacataccagttaagacgaaggtgataatt |
300 |
Q |
| |
|
|| |||| ||| ||| |||||||||| |||| ||||||||| || |||||||||| ||| ||||||| ||||| || ||||||| ||||||||||| |
|
|
| T |
21780043 |
aaggctacaccctccagcacctcttttgttaccgagagaatgtagtcaagcatgtgatataaatggttaccacattccgattaagactaaggtgataatc |
21779944 |
T |
|
| Q |
301 |
aatgcttgggcaatcgcaagagatccaaactactggactgaaccagagaagttttatccagagagattcattgacagcggtattgactataaagggagta |
400 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||| || |||| |||||||| ||||||||||| |
|
|
| T |
21779943 |
aatgcttgggcaattgcaagagatccaaactactggactgaaccagagatgttttatccagagagattcatcgatagcgatattgactttaaagggagta |
21779844 |
T |
|
| Q |
401 |
acttcgaatacattccttttggtgctggaagaa |
433 |
Q |
| |
|
| || || |||||||| |||||||| ||||||| |
|
|
| T |
21779843 |
attttgagtacattccatttggtgccggaagaa |
21779811 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0554 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: scaffold0554
Description:
Target: scaffold0554; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 8 - 433
Target Start/End: Original strand, 6331 - 6756
Alignment:
| Q |
8 |
aggacattttcgctggtggaggtgagacatcagcaagcaccatagattgggcaatgatagaaatgataaggaatccaagaataatgaagaaagcacaaga |
107 |
Q |
| |
|
|||||||||| | || ||||||||| |||||||||| ||||||||||||||||||| ||||||||||||| | ||||||||||||| ||||||||||| |
|
|
| T |
6331 |
aggacatttttggtgctggaggtgatacatcagcaaccaccatagattgggcaatggcagaaatgataagggagccaagaataatgatgaaagcacaagc |
6430 |
T |
|
| Q |
108 |
tgaagtgagggaggttttaaaaatgaaagaacgggttgatgaaaaatgcatcaatgaactcagttatctgaaatcagttgtcaaagaaacccttagatta |
207 |
Q |
| |
|
||| ||| | || ||||| | | |||| | | |||||||||||| | ||| | |||||| |||| |||||||||| ||||||||||||||||| ||| |
|
|
| T |
6431 |
tgaggtgcgagaagtttttacattgaatggaaaggttgatgaaaattacattagcaaactcaattatttgaaatcagtcgtcaaagaaacccttaggtta |
6530 |
T |
|
| Q |
208 |
catccttcagtacctcttttgctaccaagagaatgtggtaaagcatgtgagatacatggttatcacataccagttaagacgaaggtgataattaatgctt |
307 |
Q |
| |
|
|| ||| ||| ||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||| ||| || ||||||||||| ||||||| |
|
|
| T |
6531 |
caccctccagcacctcttttgctaccaagagaatgtggtaaagcatgtgagataaatggttataacataccgtttaggagtaaggtgataatcaatgctt |
6630 |
T |
|
| Q |
308 |
gggcaatcgcaagagatccaaactactggactgaaccagagaagttttatccagagagattcattgacagcggtattgactataaagggagtaacttcga |
407 |
Q |
| |
|
||||||| |||||||||||||||| ||||||||||||||||| |||||||||||||||||||| ||||||| |||||||||||||||| |||| || || |
|
|
| T |
6631 |
gggcaattgcaagagatccaaacttctggactgaaccagagaggttttatccagagagattcactgacagcactattgactataaagggggtaattttga |
6730 |
T |
|
| Q |
408 |
atacattccttttggtgctggaagaa |
433 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
6731 |
gtacattccttttggtgctggaagaa |
6756 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 99; Significance: 1e-48; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 91 - 433
Target Start/End: Complemental strand, 12610245 - 12609903
Alignment:
| Q |
91 |
atgaagaaagcacaagatgaagtgagggaggttttaaaaatgaaagaacgggttgatgaaaaatgcatcaatgaactcagttatctgaaatcagttgtca |
190 |
Q |
| |
|
|||||||||||||||||||| || || || | || || ||||||| | ||||| ||||| || || |||||||||| |||| | || |||||||| | |
|
|
| T |
12610245 |
atgaagaaagcacaagatgaggtaagagatatattcaacatgaaaggaaatgttgaagaaaattgtataaatgaactcacttatttaaagtcagttgtga |
12610146 |
T |
|
| Q |
191 |
aagaaacccttagattacatccttcagtacctcttttgctaccaagagaatgtggtaaagcatgtgagatacatggttatcacataccagttaagacgaa |
290 |
Q |
| |
|
|||| ||| | || ||||||||| ||| |||||||| || |||||||||||||| ||||||||||||| |||| |||| |||||| | || | || |
|
|
| T |
12610145 |
aagagaccttaaggttacatcctccaggtcctcttttacttccaagagaatgtggacaagcatgtgagattgatgggtatcgtataccaatcaaaagcaa |
12610046 |
T |
|
| Q |
291 |
ggtgataattaatgcttgggcaatcgcaagagatccaaactactggactgaaccagagaagttttatccagagagattcattgacagcggtattgactat |
390 |
Q |
| |
|
||||||| | ||||| ||||| || | |||||||||||| ||||||||||||||||||||||||||||| ||||||||||| | ||| ||||||||| |
|
|
| T |
12610045 |
ggtgatagtcaatgcatgggcgattggaagagatccaaagtactggactgaaccagagaagttttatccggagagattcatcggtagctctattgactac |
12609946 |
T |
|
| Q |
391 |
aaagggagtaacttcgaatacattccttttggtgctggaagaa |
433 |
Q |
| |
|
||||||| ||| || || |||||||| |||||||||||||||| |
|
|
| T |
12609945 |
aaagggaataattttgagtacattccctttggtgctggaagaa |
12609903 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 160 - 433
Target Start/End: Original strand, 15885691 - 15885964
Alignment:
| Q |
160 |
aatgaactcagttatctgaaatcagttgtcaaagaaacccttagattacatccttcagtacctcttttgctaccaagagaatgtggtaaagcatgtgaga |
259 |
Q |
| |
|
||||| |||| |||| |||| |||||||| ||||| ||| | || ||||| ||| ||| |||||||| || ||||||||||||| |||||||||||| |
|
|
| T |
15885691 |
aatgagctcacttatttgaagtcagttgtgaaagagaccttaaggttacaccctccagctcctcttttacttccaagagaatgtgaacaagcatgtgaga |
15885790 |
T |
|
| Q |
260 |
tacatggttatcacataccagttaagacgaaggtgataattaatgcttgggcaatcgcaagagatccaaactactggactgaaccagagaagttttatcc |
359 |
Q |
| |
|
| |||||||||| |||||| || | ||||||||| | ||||| ||||| || | |||||||||||| || |||||||||||||||| ||||||||| |
|
|
| T |
15885791 |
ttgatggttatcatataccaaccaaaagcaaggtgatagtcaatgcatgggcgattggaagagatccaaagtattggactgaaccagagaggttttatcc |
15885890 |
T |
|
| Q |
360 |
agagagattcattgacagcggtattgactataaagggagtaacttcgaatacattccttttggtgctggaagaa |
433 |
Q |
| |
|
|||||||||||||| ||| ||||||||||||||||| ||| || || ||||||||||||||| ||||||||| |
|
|
| T |
15885891 |
agagagattcattggtagctctattgactataaagggaataattttgagtacattccttttggttctggaagaa |
15885964 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 235 - 433
Target Start/End: Complemental strand, 12637197 - 12636999
Alignment:
| Q |
235 |
agagaatgtggtaaagcatgtgagatacatggttatcacataccagttaagacgaaggtgataattaatgcttgggcaatcgcaagagatccaaactact |
334 |
Q |
| |
|
||||||||||| |||||||||| || | || ||||| ||||||| || | ||||||||| | ||||| ||| |||| | ||||||||||| |||| |
|
|
| T |
12637197 |
agagaatgtggacaagcatgtgaaattgaagggtatcatataccagccaaaagtaaggtgatagtaaatgcatggacaattggtagagatccaaagtact |
12637098 |
T |
|
| Q |
335 |
ggactgaaccagagaagttttatccagagagattcattgacagcggtattgactataaagggagtaacttcgaatacattccttttggtgctggaagaa |
433 |
Q |
| |
|
||||||||||||||| |||| |||||||||||||||||| ||| ||||||||| ||||| | ||| || || ||||||||||||||||| ||||||| |
|
|
| T |
12637097 |
ggactgaaccagagaggtttcatccagagagattcattggtagctctattgactacaaaggaaataattttgagtacattccttttggtgcaggaagaa |
12636999 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 24 - 116
Target Start/End: Complemental strand, 12637405 - 12637313
Alignment:
| Q |
24 |
tggaggtgagacatcagcaagcaccatagattgggcaatgatagaaatgataaggaatccaagaataatgaagaaagcacaagatgaagtgag |
116 |
Q |
| |
|
||||||||| |||||| | | ||||||| |||||||||| ||| | ||||| |||||||| | ||||||||||||||| |||||||||| |
|
|
| T |
12637405 |
tggaggtgaaacatcatccactaccatagtttgggcaatggcagagttagtaagggatccaagagtgatgaagaaagcacaatatgaagtgag |
12637313 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0059 (Bit Score: 86; Significance: 6e-41; HSPs: 2)
Name: scaffold0059
Description:
Target: scaffold0059; HSP #1
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 221 - 430
Target Start/End: Complemental strand, 62363 - 62154
Alignment:
| Q |
221 |
ctcttttgctaccaagagaatgtggtaaagcatgtgagatacatggttatcacataccagttaagacgaaggtgataattaatgcttgggcaatcgcaag |
320 |
Q |
| |
|
||||||| || |||||||||||| | ||||||||||||| |||| ||||| |||||| | || || ||| ||||| ||||||| |||||||||| ||| |
|
|
| T |
62363 |
ctcttttacttccaagagaatgtagagaagcatgtgagattgatgggtatcatataccaatgaaaacaaagctgatagttaatgcatgggcaatcggaag |
62264 |
T |
|
| Q |
321 |
agatccaaactactggactgaaccagagaagttttatccagagagattcattgacagcggtattgactataaagggagtaacttcgaatacattcctttt |
420 |
Q |
| |
|
|||||||| |||||||| |||||||||| ||||||||||||||||||||||| || ||||||||| || |||| ||| ||||| |||||||||||| |
|
|
| T |
62263 |
agatccaaggtactggacggaaccagagaggttttatccagagagattcattggtagttctattgactacaacgggaataatttcgagtacattcctttt |
62164 |
T |
|
| Q |
421 |
ggtgctggaa |
430 |
Q |
| |
|
|||||||||| |
|
|
| T |
62163 |
ggtgctggaa |
62154 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0059; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 80 - 116
Target Start/End: Complemental strand, 62504 - 62468
Alignment:
| Q |
80 |
atccaagaataatgaagaaagcacaagatgaagtgag |
116 |
Q |
| |
|
|||||||| | |||||||||||||||||||||||||| |
|
|
| T |
62504 |
atccaagagtgatgaagaaagcacaagatgaagtgag |
62468 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 224 - 433
Target Start/End: Original strand, 5594023 - 5594232
Alignment:
| Q |
224 |
ttttgctaccaagagaatgtggtaaagcatgtgagatacatggttatcacataccagttaagacgaaggtgataattaatgcttgggcaatcgcaagaga |
323 |
Q |
| |
|
||||||| |||||||||||||| ||||||||||||||| |||| ||| | ||||| |||| | || |||||| | ||||||||||| || | |||||| |
|
|
| T |
5594023 |
ttttgcttccaagagaatgtggaaaagcatgtgagataaatgggtatgatataccttttaaaagcaaagtgatagtgaatgcttgggctattggaagaga |
5594122 |
T |
|
| Q |
324 |
tccaaactactggactgaaccagagaagttttatccagagagattcattgacagcggtattgactataaagggagtaacttcgaatacattccttttggt |
423 |
Q |
| |
|
|||||| | ||| || ||||| | |||||||| || ||||||||||| || || | |||||||| || | ||| || || | ||||||||||||| |
|
|
| T |
5594123 |
tccaaatcattgggacgacccagaaagattttatcctgaaagattcattgatagttgtgtggactataagggtaataattttgagttcattccttttggt |
5594222 |
T |
|
| Q |
424 |
gctggaagaa |
433 |
Q |
| |
|
||||| |||| |
|
|
| T |
5594223 |
gctggtagaa |
5594232 |
T |
|
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