View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2695_low_8 (Length: 413)

Name: NF2695_low_8
Description: NF2695
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2695_low_8
NF2695_low_8
[»] chr4 (13 HSPs)
chr4 (17-400)||(20577237-20577620)
chr4 (64-192)||(20570984-20571111)
chr4 (127-212)||(17812259-17812344)
chr4 (64-172)||(13027778-13027886)
chr4 (64-172)||(14357136-14357243)
chr4 (73-164)||(2651808-2651898)
chr4 (295-373)||(14902237-14902315)
chr4 (118-164)||(16324529-16324575)
chr4 (294-389)||(17812130-17812224)
chr4 (295-338)||(18776263-18776306)
chr4 (295-380)||(17526220-17526304)
chr4 (64-183)||(18394532-18394653)
chr4 (73-164)||(14902472-14902561)
[»] chr2 (15 HSPs)
chr2 (119-310)||(19320263-19320453)
chr2 (73-209)||(25918654-25918790)
chr2 (312-389)||(25918914-25918991)
chr2 (63-165)||(24440731-24440832)
chr2 (73-209)||(15668508-15668644)
chr2 (73-172)||(22383481-22383580)
chr2 (312-381)||(19320176-19320245)
chr2 (251-383)||(14792793-14792924)
chr2 (73-164)||(24157841-24157933)
chr2 (72-162)||(21911075-21911164)
chr2 (295-389)||(33705780-33705873)
chr2 (126-212)||(33705962-33706048)
chr2 (282-384)||(19643459-19643560)
chr2 (251-309)||(22683609-22683667)
chr2 (312-384)||(15668351-15668423)
[»] chr5 (14 HSPs)
chr5 (68-371)||(27275977-27276281)
chr5 (73-172)||(17262764-17262863)
chr5 (73-164)||(20969209-20969299)
chr5 (73-172)||(34638460-34638558)
chr5 (295-373)||(13692665-13692743)
chr5 (64-164)||(26119864-26119964)
chr5 (285-373)||(27057549-27057637)
chr5 (73-160)||(20567814-20567901)
chr5 (293-384)||(20575679-20575770)
chr5 (73-164)||(39798921-39799011)
chr5 (75-172)||(27057329-27057425)
chr5 (72-165)||(31589051-31589143)
chr5 (312-358)||(20568059-20568105)
chr5 (293-373)||(20969473-20969553)
[»] scaffold0758 (2 HSPs)
scaffold0758 (19-164)||(4230-4375)
scaffold0758 (292-389)||(4530-4627)
[»] chr3 (30 HSPs)
chr3 (292-400)||(16304970-16305078)
chr3 (272-389)||(2903026-2903142)
chr3 (292-389)||(13699586-13699683)
chr3 (73-172)||(22766576-22766675)
chr3 (282-374)||(3087753-3087845)
chr3 (64-209)||(27851546-27851693)
chr3 (81-175)||(16794325-16794418)
chr3 (62-160)||(19197935-19198033)
chr3 (65-170)||(14007577-14007682)
chr3 (73-214)||(16305165-16305306)
chr3 (73-172)||(315099-315197)
chr3 (73-157)||(14072704-14072788)
chr3 (62-192)||(20418235-20418364)
chr3 (295-389)||(13932187-13932280)
chr3 (295-389)||(13654196-13654290)
chr3 (64-165)||(16882293-16882394)
chr3 (295-373)||(20418464-20418542)
chr3 (73-164)||(8729049-8729141)
chr3 (73-164)||(9080936-9081028)
chr3 (46-157)||(11078636-11078745)
chr3 (80-172)||(17697630-17697722)
chr3 (296-384)||(19696047-19696135)
chr3 (296-384)||(19705661-19705749)
chr3 (68-103)||(13931953-13931988)
chr3 (65-103)||(11513843-11513881)
chr3 (251-309)||(11514021-11514079)
chr3 (119-164)||(13653975-13654020)
chr3 (266-307)||(17762004-17762045)
chr3 (266-307)||(19063324-19063365)
chr3 (295-335)||(27851801-27851841)
[»] chr6 (17 HSPs)
chr6 (73-171)||(24728591-24728688)
chr6 (292-389)||(31127148-31127245)
chr6 (292-384)||(26185964-26186056)
chr6 (64-163)||(30451579-30451678)
chr6 (73-164)||(23006099-23006189)
chr6 (73-164)||(23782177-23782267)
chr6 (64-166)||(24718783-24718885)
chr6 (65-166)||(26185719-26185819)
chr6 (67-164)||(18172076-18172173)
chr6 (126-175)||(23231250-23231299)
chr6 (46-163)||(31127386-31127502)
chr6 (69-172)||(25930485-25930589)
chr6 (119-214)||(18026759-18026854)
chr6 (64-159)||(16462698-16462793)
chr6 (295-337)||(13145415-13145457)
chr6 (312-373)||(23231447-23231508)
chr6 (69-172)||(23297958-23298062)
[»] chr1 (13 HSPs)
chr1 (46-168)||(26703543-26703665)
chr1 (73-214)||(21683118-21683258)
chr1 (63-219)||(26279978-26280134)
chr1 (73-172)||(16869978-16870077)
chr1 (79-164)||(23054388-23054472)
chr1 (292-384)||(21682936-21683028)
chr1 (266-317)||(31359521-31359572)
chr1 (283-373)||(18516906-18516996)
chr1 (73-166)||(18129992-18130084)
chr1 (296-389)||(25399625-25399717)
chr1 (128-164)||(16478703-16478739)
chr1 (312-373)||(18129748-18129809)
chr1 (82-183)||(20109903-20110003)
[»] scaffold0043 (3 HSPs)
scaffold0043 (286-389)||(1642-1745)
scaffold0043 (314-389)||(25432-25507)
scaffold0043 (73-169)||(1838-1934)
[»] scaffold0351 (2 HSPs)
scaffold0351 (295-389)||(9029-9123)
scaffold0351 (53-173)||(9252-9368)
[»] scaffold0683 (1 HSPs)
scaffold0683 (292-384)||(619-711)
[»] scaffold0311 (1 HSPs)
scaffold0311 (64-164)||(20074-20173)
[»] chr8 (8 HSPs)
chr8 (46-214)||(19505444-19505611)
chr8 (296-389)||(12541884-12541977)
chr8 (296-389)||(1208461-1208554)
chr8 (64-164)||(18558019-18558119)
chr8 (292-384)||(22710861-22710954)
chr8 (292-370)||(19505260-19505338)
chr8 (72-214)||(12541635-12541777)
chr8 (251-309)||(12541822-12541881)
[»] scaffold0622 (2 HSPs)
scaffold0622 (46-172)||(3400-3525)
scaffold0622 (292-337)||(1678-1723)
[»] scaffold0364 (1 HSPs)
scaffold0364 (64-164)||(10411-10511)
[»] scaffold0002 (3 HSPs)
scaffold0002 (292-389)||(116076-116173)
scaffold0002 (292-389)||(112466-112563)
scaffold0002 (62-173)||(112211-112318)
[»] scaffold0522 (2 HSPs)
scaffold0522 (64-164)||(4272-4371)
scaffold0522 (64-164)||(11555-11654)
[»] scaffold0388 (1 HSPs)
scaffold0388 (74-213)||(5392-5532)
[»] scaffold0092 (2 HSPs)
scaffold0092 (67-309)||(8092-8324)
scaffold0092 (297-389)||(8328-8419)
[»] chr7 (18 HSPs)
chr7 (69-172)||(7487952-7488055)
chr7 (64-152)||(9064242-9064329)
chr7 (295-373)||(9063975-9064053)
chr7 (295-389)||(11572076-11572169)
chr7 (64-185)||(13172386-13172507)
chr7 (65-141)||(16412737-16412814)
chr7 (72-209)||(18361592-18361728)
chr7 (73-152)||(16105061-16105140)
chr7 (73-172)||(18047882-18047980)
chr7 (118-164)||(5035431-5035477)
chr7 (312-373)||(16307521-16307582)
chr7 (305-389)||(1878042-1878125)
chr7 (301-389)||(4549931-4550018)
chr7 (69-164)||(16412000-16412096)
chr7 (67-103)||(25807389-25807425)
chr7 (312-389)||(18361420-18361498)
chr7 (301-389)||(15870900-15870987)
chr7 (297-389)||(23126176-23126267)
[»] scaffold0498 (2 HSPs)
scaffold0498 (65-213)||(3262-3411)
scaffold0498 (295-389)||(3079-3172)
[»] scaffold0040 (1 HSPs)
scaffold0040 (71-208)||(3983-4119)
[»] scaffold0003 (2 HSPs)
scaffold0003 (65-141)||(1449-1526)
scaffold0003 (69-164)||(712-808)
[»] scaffold0067 (1 HSPs)
scaffold0067 (119-175)||(16414-16470)
[»] scaffold0490 (1 HSPs)
scaffold0490 (118-164)||(7383-7429)
[»] scaffold1107 (1 HSPs)
scaffold1107 (119-175)||(2354-2410)


Alignment Details
Target: chr4 (Bit Score: 340; Significance: 0; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 17 - 400
Target Start/End: Original strand, 20577237 - 20577620
Alignment:
Q  17 aataaccagcatggacacagttgtgacattactatgtgcatacaagagagtggagtagtggagtagtggttgtgcaattgtactattttccatttaccgc 116  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  20577237 aataaccagcgtggacacagttgtgacattactatgtgcatacaagagagtggagtagtggagtagtggttgtgcaattgtactatttcccatttaccgc 20577336  T
Q  117 actcttcaatggataagaatccaatgccttctaatttctctgaaatagccattgcttcatacttctacttcttctatagacttgtgtcttcaaataacaa 216  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||  |||||| |||||||  ||||||||||||||||| |||||    
T  20577337 actcttcattggataagaatccaatgccttctaatttctctgaaatagccattgcttcaggcttctatttcttctgcagacttgtgtcttcaaaaaacaa 20577436  T
Q  217 aataaattgattttcaggttcaaactctgaaggtttcagactctggtggcttcatactctgactatcagcttctaatggtcttcagactctgacatgcaa 316  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20577437 aataaattgactttcaggttcaaactctgaaggtttcagactctggtggcttcatactctgactatcagcttctaatggtcttcagactctgacatgcaa 20577536  T
Q  317 cataagcttcctttgtaaattatattgctttcatttattcttttagaaccaatactttgttttaagacctatataatgtagtct 400  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  20577537 cataagcttcctttgtaaattatattgctttcatttattctttcagaaccaatactttgttttaagacctatataatgtagtct 20577620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 64 - 192
Target Start/End: Complemental strand, 20571111 - 20570984
Alignment:
Q  64 gagtggagtagtggagtagtggttgtgcaattgtactattttccatttaccgcactcttcaatggataagaatccaatgccttctaatttctctgaaata 163  Q
    ||||| |||||||||||||||||||| |||||||||||| | || ||| | |  ||||||| |||||||| ||| |||||||||||||| ||||||||||    
T  20571111 gagtgaagtagtggagtagtggttgtacaattgtactatgt-cctttttctgtgctcttcagtggataagcatcaaatgccttctaattcctctgaaata 20571013  T
Q  164 gccattgcttcatacttctacttcttcta 192  Q
    | | ||||| || ||||||| | ||||||    
T  20571012 gtcgttgctccagacttctattccttcta 20570984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 127 - 212
Target Start/End: Complemental strand, 17812344 - 17812259
Alignment:
Q  127 ggataagaatccaatgccttctaatttctctgaaatagccattgcttcatacttctacttcttctatagacttgtgtcttcaaata 212  Q
    ||||||| |||||||||||||||||| ||||||||||||| ||||| || ||||||| |||||||  | | |||||||||||||||    
T  17812344 ggataagcatccaatgccttctaattcctctgaaatagccgttgctccaaacttctatttcttctgcaaatttgtgtcttcaaata 17812259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 64 - 172
Target Start/End: Original strand, 13027778 - 13027886
Alignment:
Q  64 gagtggagtagtggag-tagtggttgtgcaattgtactattttccatttacc-gcactcttcaatggataagaatccaatgccttctaatttctctgaaa 161  Q
    |||||||||||||||| |||||| ||| |||||||| ||| |  ||||| || || ||||||| |||||||| |||||||||||||||||| ||||||||    
T  13027778 gagtggagtagtggaggtagtggctgtacaattgtaatatgt--cattttcctgcgctcttcagtggataagcatccaatgccttctaattcctctgaaa 13027875  T
Q  162 tagccattgct 172  Q
    ||||| |||||    
T  13027876 tagccgttgct 13027886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 64 - 172
Target Start/End: Complemental strand, 14357243 - 14357136
Alignment:
Q  64 gagtggagtagtggagtagtggttgtgcaattgtactattttccatttaccgcactcttcaatggataagaatccaatgccttctaatttctctgaaata 163  Q
    ||||| |||||||||||||||||||| ||| ||||| || | || ||| | || ||||| | |||||||  |||||||||||||||||| ||||||||||    
T  14357243 gagtgaagtagtggagtagtggttgtacaaatgtaccatat-ccttttcctgcgctctttagtggataaccatccaatgccttctaattcctctgaaata 14357145  T
Q  164 gccattgct 172  Q
    | |||||||    
T  14357144 gacattgct 14357136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 73 - 164
Target Start/End: Original strand, 2651808 - 2651898
Alignment:
Q  73 agtggagtagtggttgtgcaattgtactattttccatttaccgcactcttcaatggataagaatccaatgccttctaatttctctgaaatag 164  Q
    ||||||||||||||||| |||||||||||| | || ||| |  | ||||||| |||||||| || ||||||||||||||| |||||||||||    
T  2651808 agtggagtagtggttgtacaattgtactatgt-ccttttcctacgctcttcagtggataagcattcaatgccttctaattcctctgaaatag 2651898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 295 - 373
Target Start/End: Complemental strand, 14902315 - 14902237
Alignment:
Q  295 gtcttcagactctgacatgcaacataagcttcctttgtaaattatattgctttcatttattcttttagaaccaatactt 373  Q
    ||||||| |||||| | |||||||||| ||||||||  |||||  |||||| || |||||||||| |||||||||||||    
T  14902315 gtcttcaaactctgtcttgcaacataaccttccttttcaaatttcattgctctcttttattctttcagaaccaatactt 14902237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 118 - 164
Target Start/End: Complemental strand, 16324575 - 16324529
Alignment:
Q  118 ctcttcaatggataagaatccaatgccttctaatttctctgaaatag 164  Q
    |||||||||||||||| || ||||||||||||||| |||||||||||    
T  16324575 ctcttcaatggataagcatacaatgccttctaattcctctgaaatag 16324529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 294 - 389
Target Start/End: Complemental strand, 17812224 - 17812130
Alignment:
Q  294 ggtcttcagactctgacatgcaacataagcttcctttgtaaattatattgctttcatttattcttttagaaccaatactttgttttaagacctata 389  Q
    |||||||||||| |||| ||||||| || ||||  ||||||||||| ||||| ||| ||  ||||  ||||||||||| |||||||||||| ||||    
T  17812224 ggtcttcagactatgacttgcaacaaaa-cttctcttgtaaattatgttgctctcaattgctcttccagaaccaatacattgttttaagacttata 17812130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 295 - 338
Target Start/End: Original strand, 18776263 - 18776306
Alignment:
Q  295 gtcttcagactctgacatgcaacataagcttcctttgtaaatta 338  Q
    |||||||||||||| | |||||||||||||||||||||| ||||    
T  18776263 gtcttcagactctgtcttgcaacataagcttcctttgtagatta 18776306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 295 - 380
Target Start/End: Complemental strand, 17526304 - 17526220
Alignment:
Q  295 gtcttcagactctgacatgcaacataagcttcctttgtaaattatattgctttcatttattcttttagaaccaatactttgtttta 380  Q
    |||||||||||||||| |||||| ||||||||  |||||||  |  ||||| |||||| |||||  |||||||||||| |||||||    
T  17526304 gtcttcagactctgacttgcaac-taagcttctcttgtaaaaaaatttgctctcatttgttcttccagaaccaatactatgtttta 17526220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 64 - 183
Target Start/End: Original strand, 18394532 - 18394653
Alignment:
Q  64 gagtggagtagtggagtagtggttgtgcaattgtactattt-tccatttaccgcact-cttcaatggataagaatccaatgccttctaatttctctgaaa 161  Q
    |||||||||  ||||||||||||||| |||||||||||||| ||| ||  | || || ||||| ||||||||  || |||||||| ||||| ||||||||    
T  18394532 gagtggagtcatggagtagtggttgtacaattgtactatttgtcctttctctgcgctccttcagtggataagcctcaaatgccttataattcctctgaaa 18394631  T
Q  162 tagccattgcttcatacttcta 183  Q
    | | | ||||| || |||||||    
T  18394632 tggtcgttgctccagacttcta 18394653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 73 - 164
Target Start/End: Complemental strand, 14902561 - 14902472
Alignment:
Q  73 agtggagtagtggttgtgcaattgtactattttccatttaccgcactcttcaatggataagaatccaatgccttctaatttctctgaaatag 164  Q
    ||||||||||||||||| |||||||||||| |  ||||| | || ||||| | |||| ||| || || |||||||||||| |||| ||||||    
T  14902561 agtggagtagtggttgtacaattgtactatgt--cattttcagcgctctttagtggagaagcattcactgccttctaattcctctaaaatag 14902472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 76; Significance: 5e-35; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 119 - 310
Target Start/End: Complemental strand, 19320453 - 19320263
Alignment:
Q  119 tcttcaatggataagaatccaatgccttctaatttctctgaaatagccattgcttcatacttctacttcttctatagacttgtgtcttcaaataacaaaa 218  Q
    |||||| || ||||| |||||||||||||||||| ||||||||||||  |||||  |  |||||| | |||||  |  |  ||||||||||||||| |||    
T  19320453 tcttcagtgtataagcatccaatgccttctaattcctctgaaatagctgttgctctagccttctattccttctgcaatcacgtgtcttcaaataaccaaa 19320354  T
Q  219 taaattgattttcaggttcaaactctgaaggtttcagactctggtggcttcatactctgactatcagcttctaatggtcttcagactctgac 310  Q
    |||| ||| || |||||||| |||||||||| |||||||||| |||||||||||| |||||| ||||||||| |||||||||||||||||||    
T  19320353 taaactgaatt-caggttcagactctgaaggcttcagactctagtggcttcataccctgactgtcagcttctgatggtcttcagactctgac 19320263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 73 - 209
Target Start/End: Original strand, 25918654 - 25918790
Alignment:
Q  73 agtggagtagtggttgtgcaattgtactattttccatttaccgcactcttcaatggataagaatccaatgccttctaatttctctgaaatagccattgct 172  Q
    ||||||||||||||||| ||||||||||||| ||| | ||| || ||||| | |||||||| |||||||||||||||||| ||||||  ||| |||||||    
T  25918654 agtggagtagtggttgtacaattgtactattgtccttctactgcgctctttagtggataagcatccaatgccttctaattcctctgatgtagacattgct 25918753  T
Q  173 tcatacttctacttcttctatagacttgtgtcttcaa 209  Q
     || ||||||| | |||||  | ||||||||||||||    
T  25918754 ccagacttctattccttctgcaaacttgtgtcttcaa 25918790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 312 - 389
Target Start/End: Original strand, 25918914 - 25918991
Alignment:
Q  312 tgcaacataagcttcctttgtaaattatattgctttcatttattcttttagaaccaatactttgttttaagacctata 389  Q
    ||||||||||||||||||||||||||  |||||| |||||| ||||| |||||||||||| |||||||||||| ||||    
T  25918914 tgcaacataagcttcctttgtaaattccattgctctcatttgttcttctagaaccaataccttgttttaagacttata 25918991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 63 - 165
Target Start/End: Complemental strand, 24440832 - 24440731
Alignment:
Q  63 agagtggagtagtggag-tagtggttgtgcaattgtactattttccatttaccgcactcttcaatggataagaatccaatgccttctaatttctctgaaa 161  Q
    ||||||||||||||||| |||||||||| |||||||||||| | || ||||  || ||||||| |||||||  |||||||||||||||||| ||||||||    
T  24440832 agagtggagtagtggaggtagtggttgtacaattgtactatgt-ccttttat-gcgctcttcagtggataaacatccaatgccttctaattcctctgaaa 24440735  T
Q  162 tagc 165  Q
    ||||    
T  24440734 tagc 24440731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 73 - 209
Target Start/End: Complemental strand, 15668644 - 15668508
Alignment:
Q  73 agtggagtagtggttgtgcaattgtactattttccatttaccgcactcttcaatggataagaatccaatgccttctaatttctctgaaatagccattgct 172  Q
    ||||||||||||| ||| ||||||||||||| |||  || |  |  |||||| |||||||| |||||||||||| |||||  |||||||||||| |||||    
T  15668644 agtggagtagtgggtgtacaattgtactattgtcctatttcttcggtcttcagtggataagcatccaatgccttttaattcatctgaaatagccgttgct 15668545  T
Q  173 tcatacttctacttcttctatagacttgtgtcttcaa 209  Q
    |||  ||| || | |||||  || |||||||||||||    
T  15668544 tcaagcttatattccttctgcagtcttgtgtcttcaa 15668508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 73 - 172
Target Start/End: Original strand, 22383481 - 22383580
Alignment:
Q  73 agtggagtagtggttgtgcaattgtactattttccatttaccgcactcttcaatggataagaatccaatgccttctaatttctctgaaatagccattgct 172  Q
    ||||||||||||||||| ||| | ||||||| ||| |||   || ||||| | |||||||| |||||||||||||||||| |||| |||||||| |||||    
T  22383481 agtggagtagtggttgtacaaatatactattgtcctttttatgcgctctttagtggataagcatccaatgccttctaattcctctaaaatagccgttgct 22383580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 312 - 381
Target Start/End: Complemental strand, 19320245 - 19320176
Alignment:
Q  312 tgcaacataagcttcctttgtaaattatattgctttcatttattcttttagaaccaatactttgttttaa 381  Q
    |||||||||||||| ||||||| ||| | |||||||||||| |||||  ||||| |||||||||||||||    
T  19320245 tgcaacataagctttctttgtagattcttttgctttcatttgttcttccagaactaatactttgttttaa 19320176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 251 - 383
Target Start/End: Complemental strand, 14792924 - 14792793
Alignment:
Q  251 ttcagactctggtggcttcatactctgactatcagcttctaatggtcttcagactctgacatgcaacataagcttcctttgtaaattatattgctttcat 350  Q
    |||||||||||||| ||||  ||||||||| || |||||| |||||||| |||||||||| ||||||| ||| || ||||| ||||| | |||   |||     
T  14792924 ttcagactctggtgacttcggactctgactgtcggcttctgatggtctttagactctgacttgcaaca-aagttttctttgaaaattcttttgtactcaa 14792826  T
Q  351 ttattcttttagaaccaatactttgttttaaga 383  Q
    || | |||| ||||| ||||| |||||||||||    
T  14792825 ttgtcctttcagaactaataccttgttttaaga 14792793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 73 - 164
Target Start/End: Original strand, 24157841 - 24157933
Alignment:
Q  73 agtggagtagtggttgtgcaattgtactattttccatttacc-gcactcttcaatggataagaatccaatgccttctaatttctctgaaatag 164  Q
    |||||||||||||||||||||||||||||| | |  ||| ||  | ||||||| |||||||| |||||||| ||||||||| |||| ||||||    
T  24157841 agtggagtagtggttgtgcaattgtactatatccttttttcctacgctcttcagtggataagcatccaatgtcttctaattcctctaaaatag 24157933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 72 - 162
Target Start/End: Complemental strand, 21911164 - 21911075
Alignment:
Q  72 tagtggagtagtggttgtgcaattgtactattttccatttaccgcactcttcaatggataagaatccaatgccttctaatttctctgaaat 162  Q
    ||||||| | |||||||| |||||||||||| | || ||| | |||||||| | |||||||| ||| ||||||||||||||||||| ||||    
T  21911164 tagtggatttgtggttgtacaattgtactatgt-ccttttcctgcactctttagtggataagcatcaaatgccttctaatttctctaaaat 21911075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 295 - 389
Target Start/End: Complemental strand, 33705873 - 33705780
Alignment:
Q  295 gtcttcagactctgacatgcaacataagcttcctttgtaaattatattgctttcatttattcttttagaaccaatactttgttttaagacctata 389  Q
    |||||||||||| ||  ||||||  ||||||| |||||||||| | ||||| |||||| ||||| ||||||| |||| |||||||||||| ||||    
T  33705873 gtcttcagactcagatttgcaacc-aagcttcttttgtaaatttttttgctctcatttgttcttctagaaccgataccttgttttaagacttata 33705780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 126 - 212
Target Start/End: Complemental strand, 33706048 - 33705962
Alignment:
Q  126 tggataagaatccaatgccttctaatttctctgaaatagccattgcttcatacttctacttcttctatagacttgtgtcttcaaata 212  Q
    |||||||| |||||| ||||||||||||||||||||||| | ||||||||  |||||| |  ||||  | || ||||||||||||||    
T  33706048 tggataagcatccaaagccttctaatttctctgaaatagtcgttgcttcagtcttctattcattctgcacacctgtgtcttcaaata 33705962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 282 - 384
Target Start/End: Complemental strand, 19643560 - 19643459
Alignment:
Q  282 tcagcttctaatggtcttcagactctgacatgcaacataagcttcctttgtaaattatattgctttcatttattcttttagaaccaatactttgttttaa 381  Q
    ||||||||| ||||||||||||||||||| |||||| ||||||||  ||| ||| | | ||||| ||| || |||||  | |||||||  ||||||||||    
T  19643560 tcagcttctgatggtcttcagactctgacttgcaac-taagcttctcttgaaaaatcttttgctctcaattgttcttacaaaaccaattatttgttttaa 19643462  T
Q  382 gac 384  Q
    |||    
T  19643461 gac 19643459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 251 - 309
Target Start/End: Original strand, 22683609 - 22683667
Alignment:
Q  251 ttcagactctggtggcttcatactctgactatcagcttctaatggtcttcagactctga 309  Q
    |||||||||||||| ||||||| |||||   ||| ||||| ||||||||||||||||||    
T  22683609 ttcagactctggtgacttcatattctgatagtcaacttctgatggtcttcagactctga 22683667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 312 - 384
Target Start/End: Complemental strand, 15668423 - 15668351
Alignment:
Q  312 tgcaacataagcttcctttgtaaattatattgctttcatttattcttttagaaccaatactttgttttaagac 384  Q
    |||||||||||||||| |||||||||  |||| | || ||| |||||  ||||||||| |||||||| |||||    
T  15668423 tgcaacataagcttccattgtaaatttcattgttctcctttgttcttccagaaccaattctttgtttaaagac 15668351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 75; Significance: 2e-34; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 68 - 371
Target Start/End: Complemental strand, 27276281 - 27275977
Alignment:
Q  68 ggagtagtggagtagtggttgtgcaattgtactattttccatttaccg--cactcttcaatggataagaatccaatgccttctaatttctctgaaatagc 165  Q
    |||||||||||| ||||||||| ||||||||||||| ||| ||  | |  || |||||| |||||||| || ||||||||||||||| ||||||||||      
T  27276281 ggagtagtggagaagtggttgtacaattgtactattgtcctttctctgtgcattcttcagtggataagcattcaatgccttctaattcctctgaaataat 27276182  T
Q  166 cattgcttcatacttctacttcttctatagacttgtgtcttcaaataacaaaataaattgattttcaggttcaaactctgaaggtttcagactctggtgg 265  Q
      ||| ||||  |||||| | |||||  | || | ||||||||||| || |||| || | | || || || || ||| |||||| |||||||||||||||    
T  27276181 tgttgtttcacgcttctattccttctgcatacatatgtcttcaaatgaccaaattaactaactt-caagtccatactttgaaggcttcagactctggtgg 27276083  T
Q  266 cttcatactctgactatcagcttctaatggtcttcagactctgacatgcaacataagcttcctttgtaaattatattgctttcatttattcttttagaac 365  Q
    ||| | ||||  ||| ||||||||| ||||||||||||||||||| ||||||||||  |||||||  ||||||| |||||  ||||| ||||| ||||||    
T  27276082 ctttagactcaaactgtcagcttctgatggtcttcagactctgacttgcaacataattttcctttaaaaattattttgctcccatttgttcttctagaac 27275983  T
Q  366 caatac 371  Q
    ||||||    
T  27275982 caatac 27275977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 73 - 172
Target Start/End: Complemental strand, 17262863 - 17262764
Alignment:
Q  73 agtggagtagtggttgtgcaattgtactattttccatttacc-gcactcttcaatggataagaatccaatgccttctaatttctctgaaatagccattgc 171  Q
    ||||||||||||||||| ||||||||||||| ||| |||||| || ||||||| |||||||| |||||||||||||| ||| ||||||||||| ||||||    
T  17262863 agtggagtagtggttgtacaattgtactattgtcc-tttacctgcgctcttcagtggataagcatccaatgccttctcattcctctgaaatagtcattgc 17262765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 73 - 164
Target Start/End: Original strand, 20969209 - 20969299
Alignment:
Q  73 agtggagtagtggttgtgcaattgtactattttccatttaccgcactcttcaatggataagaatccaatgccttctaatttctctgaaatag 164  Q
    ||||||||||||||||| ||||||||||| | ||| ||| | |||||||| | |||||||| ||||||||| |||||||| |||| ||||||    
T  20969209 agtggagtagtggttgtacaattgtacta-tgtccctttcctgcactcttaagtggataagcatccaatgctttctaattcctcttaaatag 20969299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 73 - 172
Target Start/End: Original strand, 34638460 - 34638558
Alignment:
Q  73 agtggagtagtggttgtgcaattgtactattttccatttaccgcactcttcaatggataagaatccaatgccttctaatttctctgaaatagccattgct 172  Q
    ||||||||||||||||| |||||| |||||| ||| ||| | || ||||||| |||||||  ||||||||||||| |||| ||||||| ||||| |||||    
T  34638460 agtggagtagtggttgtacaattgcactattgtcctttt-ctgcgctcttcagtggataaacatccaatgccttcaaattcctctgaattagccgttgct 34638558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 295 - 373
Target Start/End: Original strand, 13692665 - 13692743
Alignment:
Q  295 gtcttcagactctgacatgcaacataagcttcctttgtaaattatattgctttcatttattcttttagaaccaatactt 373  Q
    |||||||||||||| | ||||||||||| ||||||||||||||  |||||| || | | |||||| |||||||||||||    
T  13692665 gtcttcagactctgtcttgcaacataagtttcctttgtaaatttcattgctctcttatgttctttcagaaccaatactt 13692743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 64 - 164
Target Start/End: Complemental strand, 26119964 - 26119864
Alignment:
Q  64 gagtggagtagtggag-tagtggttgtgcaattgtactattttccatttaccgcactcttcaatggataagaatccaatgccttctaatttctctgaaat 162  Q
    |||||||||||||||| |||||||||| |||||||||||| | |  |||   || ||||||| |||||||| |||||||||||||||||| |||| ||||    
T  26119964 gagtggagtagtggaggtagtggttgtacaattgtactatgt-ctttttcttgcgctcttcagtggataagcatccaatgccttctaattcctctaaaat 26119866  T
Q  163 ag 164  Q
    ||    
T  26119865 ag 26119864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 285 - 373
Target Start/End: Original strand, 27057549 - 27057637
Alignment:
Q  285 gcttctaatggtcttcagactctgacatgcaacataagcttcctttgtaaattatattgctttcatttattcttttagaaccaatactt 373  Q
    |||||| ||||||||||||||||| | ||||||||||||||||||||  ||||  |||||| || ||| ||| || | |||||||||||    
T  27057549 gcttctgatggtcttcagactctgtcttgcaacataagcttcctttgctaatttcattgctctcttttgttccttcaaaaccaatactt 27057637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 73 - 160
Target Start/End: Original strand, 20567814 - 20567901
Alignment:
Q  73 agtggagtagtggttgtgcaattgtactattttccatttaccgcactcttcaatggataagaatccaatgccttctaatttctctgaa 160  Q
    ||||||||||||||||| ||||||||||||| ||| |||   || ||| ||| | |||||| ||||||||||||| |||| |||||||    
T  20567814 agtggagtagtggttgtacaattgtactattgtccttttctagcgctcatcagtcgataagcatccaatgccttcaaattcctctgaa 20567901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 293 - 384
Target Start/End: Original strand, 20575679 - 20575770
Alignment:
Q  293 tggtcttcagactctgacatgcaacataagcttcctttgtaaattatattgctttcatttattcttttagaaccaatactttgttttaagac 384  Q
    ||||||||| |||| ||| ||||||||||| ||| |||||||||| ||||| | || ||| |||||| | ||||||||||||| || |||||    
T  20575679 tggtcttcaaactcagacttgcaacataagattcatttgtaaattctattgttctcttttgttctttcaaaaccaatactttgattcaagac 20575770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 73 - 164
Target Start/End: Complemental strand, 39799011 - 39798921
Alignment:
Q  73 agtggagtagtggttgtgcaattgtactattttccatttaccgcactcttcaatggataagaatccaatgccttctaatttctctgaaatag 164  Q
    ||||||||||||||||| |||||| ||||| | || ||| | || ||||| | || ||||| ||||||||| ||||||||||||||||||||    
T  39799011 agtggagtagtggttgtacaattgcactatgtccctttt-ctgcgctcttaagtgaataagcatccaatgctttctaatttctctgaaatag 39798921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 75 - 172
Target Start/End: Original strand, 27057329 - 27057425
Alignment:
Q  75 tggagtagtggttgtgcaattgtactattttccatttaccgcactcttcaatggataagaatccaatgccttctaatttctctgaaatagccattgct 172  Q
    ||||||||||||||| |||||||| ||| | || |||   || ||||||| ||||||   |||||||||||||||||| ||||||||||| |||||||    
T  27057329 tggagtagtggttgtacaattgtattatgt-cctttttttgcgctcttcagtggatagtcatccaatgccttctaattcctctgaaatagtcattgct 27057425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 72 - 165
Target Start/End: Complemental strand, 31589143 - 31589051
Alignment:
Q  72 tagtggagtagtggttgtgcaattgtactattttccatttaccgcactcttcaatggataagaatccaatgccttctaatttctctgaaatagc 165  Q
    |||||||||||||||||| |||||||||||| | || ||| | ||  |||||| |||||| | |||||||||||| ||||| ||||||| ||||    
T  31589143 tagtggagtagtggttgtacaattgtactatgt-ccttttcctgcgttcttcagtggatacgcatccaatgccttttaattcctctgaattagc 31589051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 312 - 358
Target Start/End: Original strand, 20568059 - 20568105
Alignment:
Q  312 tgcaacataagcttcctttgtaaattatattgctttcatttattctt 358  Q
    ||||||| ||||||||||||||||||| |||||| |||||| |||||    
T  20568059 tgcaacacaagcttcctttgtaaattacattgctctcatttgttctt 20568105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 293 - 373
Target Start/End: Original strand, 20969473 - 20969553
Alignment:
Q  293 tggtcttcagactctgacatgcaacataagcttcctttgtaaattatattgctttcatttattcttttagaaccaatactt 373  Q
    ||||||| ||||| || | | ||||| ||| ||||||||||||||  |||||| |||||| |||||| |||| ||||||||    
T  20969473 tggtcttaagactatgtcttacaacacaagtttcctttgtaaattccattgctctcatttgttctttcagaaacaatactt 20969553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0758 (Bit Score: 62; Significance: 1e-26; HSPs: 2)
Name: scaffold0758
Description:

Target: scaffold0758; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 19 - 164
Target Start/End: Original strand, 4230 - 4375
Alignment:
Q  19 taaccagcatggacacagttgtgacattactatgtgcatacaagagagtggagtagtggagtagtggttgtgcaattgtactattttccatttaccgcac 118  Q
    |||||||||| ||||||  | | ||| |||||| |||| | |||||||||||||||||||||||||||||| ||||||||||||| ||  ||| | ||      
T  4230 taaccagcatagacacaactataacagtactatatgcagataagagagtggagtagtggagtagtggttgtacaattgtactattgtcattttcctgcgt 4329  T
Q  119 tcttcaatggataagaatccaatgccttctaatttctctgaaatag 164  Q
    |||||| |||||||| ||| |||||||||||||| |||||||||||    
T  4330 tcttcagtggataagcatcaaatgccttctaattcctctgaaatag 4375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0758; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 292 - 389
Target Start/End: Original strand, 4530 - 4627
Alignment:
Q  292 atggtcttcagactctgacatgcaacataagcttcctttgtaaattatattgctttcatttattcttttagaaccaatactttgttttaagacctata 389  Q
    |||||||||||| || ||| ||||||||||||||||||||||| ||  |||||| |||||| || ||| ||||||||||| |||||||||||| ||||    
T  4530 atggtcttcagattcagacttgcaacataagcttcctttgtaatttccattgctctcatttgttttttcagaaccaataccttgttttaagacttata 4627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 61; Significance: 5e-26; HSPs: 30)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 292 - 400
Target Start/End: Complemental strand, 16305078 - 16304970
Alignment:
Q  292 atggtcttcagactctgacatgcaacataagcttcctttgtaaattatattgctttcatttattcttttagaaccaatactttgttttaagacctatata 391  Q
    |||||||||| |||| ||| ||||||| ||||||||||||||||||| |||||| |||||| |||||  |||||||||||||||||||||||| |||| |    
T  16305078 atggtcttcatactcagacttgcaacacaagcttcctttgtaaattacattgctctcatttgttcttccagaaccaatactttgttttaagacttataaa 16304979  T
Q  392 atgtagtct 400  Q
    || ||||||    
T  16304978 atttagtct 16304970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 272 - 389
Target Start/End: Complemental strand, 2903142 - 2903026
Alignment:
Q  272 actctgactatcagcttctaatggtcttcagactctgacatgcaacataagcttcctttgtaaattatattgctttcatttattcttttagaaccaatac 371  Q
    |||||||| |||||||||| ||||||||||||||||| | |||||| ||||||||  ||||||||| | ||||| ||||||||||||  |||||||||||    
T  2903142 actctgacaatcagcttctcatggtcttcagactctgtcttgcaac-taagcttctcttgtaaattcttttgctctcatttattcttccagaaccaatac 2903044  T
Q  372 tttgttttaagacctata 389  Q
     |||||||||||| ||||    
T  2903043 cttgttttaagacttata 2903026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 292 - 389
Target Start/End: Original strand, 13699586 - 13699683
Alignment:
Q  292 atggtcttcagactctgacatgcaacataagcttcctttgtaaattatattgctttcatttattcttttagaaccaatactttgttttaagacctata 389  Q
    ||||||||||||||||| | |||||||||||||||||||| |||||  |||||| || ||| |||||| ||||||||||||||| |||||||| ||||    
T  13699586 atggtcttcagactctgtcttgcaacataagcttcctttgcaaattccattgctctcttttgttctttcagaaccaatactttgatttaagacttata 13699683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 73 - 172
Target Start/End: Complemental strand, 22766675 - 22766576
Alignment:
Q  73 agtggagtagtggttgtgcaattgtactattttccatttaccgcactcttcaatggataagaatccaatgccttctaatttctctgaaatagccattgct 172  Q
    ||||||||||||||||| ||||||||||||| ||| ||| | || ||||||| |||||||| ||||||||||||| |||| ||||||| ||||| |||||    
T  22766675 agtggagtagtggttgtacaattgtactattgtccttttcctgcgctcttcagtggataagcatccaatgccttcaaattcctctgaattagccgttgct 22766576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 282 - 374
Target Start/End: Original strand, 3087753 - 3087845
Alignment:
Q  282 tcagcttctaatggtcttcagactctgacatgcaacataagcttcctttgtaaattatattgctttcatttattcttttagaaccaatacttt 374  Q
    ||||||| | ||||||||||||||  ||| ||||||||||||||||||||||||||  |||||| || ||| ||||| |||||||||||||||    
T  3087753 tcagcttttgatggtcttcagactaagacttgcaacataagcttcctttgtaaattccattgctctcttttgttcttctagaaccaatacttt 3087845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 64 - 209
Target Start/End: Original strand, 27851546 - 27851693
Alignment:
Q  64 gagtggagtagtggagtagtggttgtgcaattgtactattttccatttaccg--cactcttcaatggataagaatccaatgccttctaatttctctgaaa 161  Q
    |||||||||||| ||||||||||||| ||||||||||||| ||| ||  | |  || ||||||  ||||||| |||||||| ||||||| ||||||||||    
T  27851546 gagtggagtagtagagtagtggttgtacaattgtactattgtcctttctctgtccattcttcagcggataagcatccaatgtcttctaacttctctgaaa 27851645  T
Q  162 tagccattgcttcatacttctacttcttctatagacttgtgtcttcaa 209  Q
    |||   ||||| ||| |||||| | |||||  ||||||||||||||||    
T  27851646 tagttgttgctccatgcttctattccttctgcagacttgtgtcttcaa 27851693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 81 - 175
Target Start/End: Complemental strand, 16794418 - 16794325
Alignment:
Q  81 agtggttgtgcaattgtactattttccatttaccgcactcttcaatggataagaatccaatgccttctaatttctctgaaatagccattgcttca 175  Q
    ||||||||| |||||||||||| | || ||| | || |||||||||||||||| ||||||||||| |||||| ||||||||||| ||||||||||    
T  16794418 agtggttgtacaattgtactatgt-cctttttctgcgctcttcaatggataagcatccaatgcctcctaattcctctgaaatagtcattgcttca 16794325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 62 - 160
Target Start/End: Complemental strand, 19198033 - 19197935
Alignment:
Q  62 gagagtggagtagtggagtagtggttgtgcaattgtactattttccatttaccgcactcttcaatggataagaatccaatgccttctaatttctctgaa 160  Q
    ||||||||||||||| |||||||||||| ||||| ||||||| ||| |||   ||| ||||||||||||||  ||||||||||||| |||| |||||||    
T  19198033 gagagtggagtagtgaagtagtggttgtacaattttactattgtccttttgttgcattcttcaatggataatcatccaatgccttcaaattcctctgaa 19197935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 65 - 170
Target Start/End: Original strand, 14007577 - 14007682
Alignment:
Q  65 agtggagtagtggagtagtggttgtgcaattgtactattttccatttaccgcactcttcaatggataagaatccaatgccttctaatttctctgaaatag 164  Q
    ||||||||||||||||||||||||| |||||| |||||| ||| ||| | || ||||| | |||||||  ||||||||||||| |||| |||| || |||    
T  14007577 agtggagtagtggagtagtggttgtacaattgcactattgtccttttcctgcgctctttagtggataaacatccaatgccttcaaattcctctaaattag 14007676  T
Q  165 ccattg 170  Q
    ||||||    
T  14007677 ccattg 14007682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 73 - 214
Target Start/End: Complemental strand, 16305306 - 16305165
Alignment:
Q  73 agtggagtagtggttgtgcaattgtactattttccatttaccgcactcttcaatggataagaatccaatgccttctaatttctctgaaatagccattgct 172  Q
    ||||||||||||||||| ||| |||| |||| ||| ||| | || ||||| | || ||||| ||||||||||||||| || ||||||||||  |||||||    
T  16305306 agtggagtagtggttgtacaaatgtaatattgtccttttcctgcgctctttagtgcataagtatccaatgccttctatttcctctgaaatattcattgct 16305207  T
Q  173 tcatacttctacttcttctatagacttgtgtcttcaaataac 214  Q
    |||  |||||| | |||||  | |||| ||||||||||||||    
T  16305206 tcaggcttctattccttctgcaaacttatgtcttcaaataac 16305165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 73 - 172
Target Start/End: Original strand, 315099 - 315197
Alignment:
Q  73 agtggagtagtggttgtgcaattgtactattttccatttaccgcactcttcaatggataagaatccaatgccttctaatttctctgaaatagccattgct 172  Q
    ||||||||||||||||| |||| |||||||| ||| |||   || ||||||| |||||||| || ||||||||||||||| ||||||||||||| |||||    
T  315099 agtggagtagtggttgtacaat-gtactattgtccttttcatgcgctcttcagtggataagcattcaatgccttctaattcctctgaaatagccgttgct 315197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 73 - 157
Target Start/End: Original strand, 14072704 - 14072788
Alignment:
Q  73 agtggagtagtggttgtgcaattgtactattttccatttaccgcactcttcaatggataagaatccaatgccttctaatttctct 157  Q
    |||||||| |||||||| ||| ||||||||| ||| ||| ||||  ||||||||||||||| ||||||||||||| |||| ||||    
T  14072704 agtggagtggtggttgtacaagtgtactattgtccttttcccgcgttcttcaatggataagcatccaatgccttcaaattcctct 14072788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 62 - 192
Target Start/End: Original strand, 20418235 - 20418364
Alignment:
Q  62 gagagtggagtagtggagtagtggttgtgcaattgtactattttccatttacc-gcactcttcaatggataagaatccaatgccttctaatttctctgaa 160  Q
    |||||||||||| |||| |||||||| | |||||||||||| |  ||||| |  || |||||||  ||||||| |||||||||||||||||| |||||||    
T  20418235 gagagtggagtaatggattagtggttttccaattgtactatgt--cattttcttgcgctcttcagaggataagtatccaatgccttctaattcctctgaa 20418332  T
Q  161 atagccattgcttcatacttctacttcttcta 192  Q
    |||| | ||||| || ||||| | ||||||||    
T  20418333 atagtcgttgctccagacttccatttcttcta 20418364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 295 - 389
Target Start/End: Original strand, 13932187 - 13932280
Alignment:
Q  295 gtcttcagactctgacatgcaacataagcttcctttgtaaattatattgctttcatttattcttttagaaccaatactttgttttaagacctata 389  Q
    ||||||| | |||||| ||||||||| |||||||||| ||||| | ||||||||| || |||||  ||||||||||| |||||||||||| ||||    
T  13932187 gtcttcaaaatctgacttgcaacata-gcttcctttgaaaattcttttgctttcaattgttcttccagaaccaatacattgttttaagacttata 13932280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 295 - 389
Target Start/End: Original strand, 13654196 - 13654290
Alignment:
Q  295 gtcttcagactctgacatgcaacataagcttcctttgtaaattatattgctttcatttattcttttagaaccaatactttgttttaagacctata 389  Q
    |||||||||| ||| | ||||||||||||||||||||| ||||  ||| || || ||| |||||| |||| |||||||| | |||||||| ||||    
T  13654196 gtcttcagaccctgtcttgcaacataagcttcctttgttaattcgatttctctcttttgttctttcagaatcaatacttggatttaagacttata 13654290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 64 - 165
Target Start/End: Original strand, 16882293 - 16882394
Alignment:
Q  64 gagtggagtagtggag-tagtggttgtgcaattgtactattttccatttaccgcactcttcaatggataagaatccaatgccttctaatttctctgaaat 162  Q
    |||||||||| ||||| |||||||||| |||||||||||| ||   ||| | || || |||| |||||||| |||||||||||| ||||| |||||||||    
T  16882293 gagtggagtaatggaggtagtggttgtacaattgtactatgtttt-tttcctgcgctattcagtggataagcatccaatgccttttaattcctctgaaat 16882391  T
Q  163 agc 165  Q
    |||    
T  16882392 agc 16882394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 295 - 373
Target Start/End: Original strand, 20418464 - 20418542
Alignment:
Q  295 gtcttcagactctgacatgcaacataagcttcctttgtaaattatattgctttcatttattcttttagaaccaatactt 373  Q
    ||||||||||| || | ||||||| ||||||| ||||||||||  |||||| |||||| |||||| | |||||||||||    
T  20418464 gtcttcagactttgtcttgcaacaaaagcttcttttgtaaattccattgctctcatttgttctttcaaaaccaatactt 20418542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 73 - 164
Target Start/End: Complemental strand, 8729141 - 8729049
Alignment:
Q  73 agtggagtagtggtt-gtgcaattgtactattttccatttaccgcactcttcaatggataagaatccaatgccttctaatttctctgaaatag 164  Q
    ||||||||||||||| || |||||||||||| | |  |||   || ||||||| |||||||| |||||||||||||||||| |||| ||||||    
T  8729141 agtggagtagtggtttgtacaattgtactatgtcctttttcatgcgctcttcagtggataagcatccaatgccttctaattcctctaaaatag 8729049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 73 - 164
Target Start/End: Complemental strand, 9081028 - 9080936
Alignment:
Q  73 agtggagtagtggtt-gtgcaattgtactattttccatttaccgcactcttcaatggataagaatccaatgccttctaatttctctgaaatag 164  Q
    ||||||||||||||| || |||||||||||| | |  |||   || ||||||| |||||||| |||||||||||||||||| |||| ||||||    
T  9081028 agtggagtagtggtttgtacaattgtactatgtcctttttcatgcgctcttcagtggataagcatccaatgccttctaattcctctaaaatag 9080936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 46 - 157
Target Start/End: Original strand, 11078636 - 11078745
Alignment:
Q  46 tactatgtgcatacaagagagtggagtagtggagtagtggttgtgcaattgtactattttccatttaccgcactcttcaatggataagaatccaatgcct 145  Q
    ||||||||||| |||||||  |||||| || ||||||||| ||| ||||||||||||| ||| ||| |  | ||||| | |||||||| ||| |||||||    
T  11078636 tactatgtgcaaacaagag--tggagtcgtagagtagtggatgtacaattgtactattgtcctttttctacgctcttaagtggataagcatctaatgcct 11078733  T
Q  146 tctaatttctct 157  Q
    ||| ||| ||||    
T  11078734 tctgattcctct 11078745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 80 - 172
Target Start/End: Original strand, 17697630 - 17697722
Alignment:
Q  80 tagtggttgtgcaattgtactattttccatttaccgcactcttcaatggataagaatccaatgccttctaatttctctgaaatagccattgct 172  Q
    |||||||||| ||||||||||||| ||  ||| | |   ||||| ||||||||| ||||||||||||| |||| ||||||| |||| ||||||    
T  17697630 tagtggttgtacaattgtactattgtcgtttttctgtgttcttctatggataagcatccaatgccttcaaattcctctgaattagctattgct 17697722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 296 - 384
Target Start/End: Original strand, 19696047 - 19696135
Alignment:
Q  296 tcttcagactctgacatgcaacataagcttcctttgtaaattatattgctttcatttattcttttagaaccaatactttgttttaagac 384  Q
    |||||||||||| || |||||||||||||||||||||||| |   ||||| |||  | |||||   ||||||||||||||||| |||||    
T  19696047 tcttcagactctaacttgcaacataagcttcctttgtaaaatcctttgctctcacctgttcttcctgaaccaatactttgtttaaagac 19696135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 296 - 384
Target Start/End: Original strand, 19705661 - 19705749
Alignment:
Q  296 tcttcagactctgacatgcaacataagcttcctttgtaaattatattgctttcatttattcttttagaaccaatactttgttttaagac 384  Q
    |||||||||||| || |||||||||||||||||||||||| |   ||||| |||  | |||||   ||||||||||||||||| |||||    
T  19705661 tcttcagactctaacttgcaacataagcttcctttgtaaaatcctttgctctcacctgttcttcctgaaccaatactttgtttaaagac 19705749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 68 - 103
Target Start/End: Original strand, 13931953 - 13931988
Alignment:
Q  68 ggagtagtggagtagtggttgtgcaattgtactatt 103  Q
    |||||||||||||||||||||| |||||||||||||    
T  13931953 ggagtagtggagtagtggttgtacaattgtactatt 13931988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 65 - 103
Target Start/End: Original strand, 11513843 - 11513881
Alignment:
Q  65 agtggagtagtggagtagtggttgtgcaattgtactatt 103  Q
    |||||||||||||| |||||||||| |||||||||||||    
T  11513843 agtggagtagtggactagtggttgtacaattgtactatt 11513881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 251 - 309
Target Start/End: Original strand, 11514021 - 11514079
Alignment:
Q  251 ttcagactctggtggcttcatactctgactatcagcttctaatggtcttcagactctga 309  Q
    |||||||||||||||||||| ||||| ||  ||| ||||| ||||||| ||||||||||    
T  11514021 ttcagactctggtggcttcagactctaacagtcaacttctgatggtctccagactctga 11514079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 119 - 164
Target Start/End: Original strand, 13653975 - 13654020
Alignment:
Q  119 tcttcaatggataagaatccaatgccttctaatttctctgaaatag 164  Q
    |||||| ||||||| |||| |||||||||||||| |||||||||||    
T  13653975 tcttcagtggataataatctaatgccttctaattcctctgaaatag 13654020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 266 - 307
Target Start/End: Complemental strand, 17762045 - 17762004
Alignment:
Q  266 cttcatactctgactatcagcttctaatggtcttcagactct 307  Q
    ||||| ||||||||| ||||||||| ||||||||||||||||    
T  17762045 cttcagactctgactttcagcttctgatggtcttcagactct 17762004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 266 - 307
Target Start/End: Complemental strand, 19063365 - 19063324
Alignment:
Q  266 cttcatactctgactatcagcttctaatggtcttcagactct 307  Q
    ||||| ||||||||| ||||||||| ||||||||||||||||    
T  19063365 cttcagactctgactttcagcttctgatggtcttcagactct 19063324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 295 - 335
Target Start/End: Original strand, 27851801 - 27851841
Alignment:
Q  295 gtcttcagactctgacatgcaacataagcttcctttgtaaa 335  Q
    |||||||||||| ||| || |||||||||||||||||||||    
T  27851801 gtcttcagactcagacttgtaacataagcttcctttgtaaa 27851841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 59; Significance: 7e-25; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 73 - 171
Target Start/End: Complemental strand, 24728688 - 24728591
Alignment:
Q  73 agtggagtagtggttgtgcaattgtactattttccatttaccgcactcttcaatggataagaatccaatgccttctaatttctctgaaatagccattgc 171  Q
    ||||||||||||||||| |||||||||||| | || ||| | |||||||||| |||||||| |||||||||||||||||| ||||||||||||||||||    
T  24728688 agtggagtagtggttgtacaattgtactatgt-ccttttcctgcactcttcagtggataagcatccaatgccttctaattcctctgaaatagccattgc 24728591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 292 - 389
Target Start/End: Complemental strand, 31127245 - 31127148
Alignment:
Q  292 atggtcttcagactctgacatgcaacataagcttcctttgtaaattatattgctttcatttattcttttagaaccaatactttgttttaagacctata 389  Q
    |||||||||||||||  || |||||||||||||||||| |||||||  |||||| || ||| |||||| ||||||||||| |||||||||||| ||||    
T  31127245 atggtcttcagactcaaacttgcaacataagcttccttagtaaattcaattgctctcttttgttctttcagaaccaataccttgttttaagacttata 31127148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 292 - 384
Target Start/End: Original strand, 26185964 - 26186056
Alignment:
Q  292 atggtcttcagactctgacatgcaacataagcttcctttgtaaattatattgctttcatttattcttttagaaccaatactttgttttaagac 384  Q
    ||||||||||||||| | |  ||||||||||||||||||| ||| ||||||||| || ||| |||||| ||||||||||| ||||||||||||    
T  26185964 atggtcttcagactcagtctagcaacataagcttcctttgaaaaatatattgctctcttttgttctttcagaaccaataccttgttttaagac 26186056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 64 - 163
Target Start/End: Complemental strand, 30451678 - 30451579
Alignment:
Q  64 gagtggagtagtggagtagtggttgtgcaattgtactattttccatttaccgcactcttcaatggataagaatccaatgccttctaatttctctgaaata 163  Q
    |||||||||||||||||| |||||||  |||||||||||| | | ||| | || ||||||| |||||||| ||||||||||||| ||||||| |||||||    
T  30451678 gagtggagtagtggagtactggttgtataattgtactattgttctttttctgcgctcttcagtggataagcatccaatgccttcaaatttctatgaaata 30451579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 73 - 164
Target Start/End: Complemental strand, 23006189 - 23006099
Alignment:
Q  73 agtggagtagtggttgtgcaattgtactattttccatttaccgcactcttcaatggataagaatccaatgccttctaatttctctgaaatag 164  Q
    ||||||||||||||||| |||||||||||| | |  |||   ||||||||||||||||||| ||| |||||||||||||| |||||||||||    
T  23006189 agtggagtagtggttgtacaattgtactatgt-ctttttcttgcactcttcaatggataagcatctaatgccttctaattcctctgaaatag 23006099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 73 - 164
Target Start/End: Original strand, 23782177 - 23782267
Alignment:
Q  73 agtggagtagtggttgtgcaattgtactattttccatttaccgcactcttcaatggataagaatccaatgccttctaatttctctgaaatag 164  Q
    ||||||||||||||||| |||||||||||| | |  |||   ||||||||||||||||||| ||| |||||||||||||| |||||||||||    
T  23782177 agtggagtagtggttgtacaattgtactatgt-ctttttcttgcactcttcaatggataagcatctaatgccttctaattcctctgaaatag 23782267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 64 - 166
Target Start/End: Complemental strand, 24718885 - 24718783
Alignment:
Q  64 gagtggagtagtggag-tagtggttgtgcaattgtactattttccatttaccgcactcttcaatggataagaatccaatgccttctaatttctctgaaat 162  Q
    |||||||||||||||| |||||| ||| |||||||||||| | || ||| | |||||||||| |||||||| ||||||||||||||||||  | ||||||    
T  24718885 gagtggagtagtggaggtagtggctgtacaattgtactatgt-ccttttcctgcactcttcagtggataagcatccaatgccttctaattattttgaaat 24718787  T
Q  163 agcc 166  Q
    ||||    
T  24718786 agcc 24718783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 65 - 166
Target Start/End: Original strand, 26185719 - 26185819
Alignment:
Q  65 agtggagtagtggagtagtggttgtgcaattgtactattttccatttaccgcactcttcaatggataagaatccaatgccttctaatttctctgaaatag 164  Q
    |||||| ||||||| |||||||||| |||| |||||||| ||| ||| | |||||||| | |||||||| ||| ||||||||||||||  ||||||||||    
T  26185719 agtggaatagtggaatagtggttgtacaat-gtactattgtcctttttctgcactctttagtggataagcatctaatgccttctaattcatctgaaatag 26185817  T
Q  165 cc 166  Q
    ||    
T  26185818 cc 26185819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 67 - 164
Target Start/End: Complemental strand, 18172173 - 18172076
Alignment:
Q  67 tggagtagtggag-tagtggttgtgcaattgtactattttccatttaccgcactcttcaatggataagaatccaatgccttctaatttctctgaaatag 164  Q
    ||||||||||||| |||||||||| |||||||||||| | || ||| | ||| ||||||||||||||| ||  |||| ||||||||| |||||||||||    
T  18172173 tggagtagtggaggtagtggttgtacaattgtactatgt-ccttttcctgcagtcttcaatggataagcatttaatgtcttctaattcctctgaaatag 18172076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 126 - 175
Target Start/End: Original strand, 23231250 - 23231299
Alignment:
Q  126 tggataagaatccaatgccttctaatttctctgaaatagccattgcttca 175  Q
    |||||||| ||||||||||||||||||||||||||||| | |||||||||    
T  23231250 tggataagcatccaatgccttctaatttctctgaaatatcaattgcttca 23231299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 46 - 163
Target Start/End: Complemental strand, 31127502 - 31127386
Alignment:
Q  46 tactatgtgcatacaagagagtggagtagtggagtagtggttgtgcaattgtactattttccatttaccgcactcttcaatggataagaatccaatgcct 145  Q
    ||||||||||||||| || |||||| |||||||  ||||||||| ||||| ||||||| | | |||   || ||||||| ||| |||| |||||||||||    
T  31127502 tactatgtgcatacatgatagtggaatagtggaacagtggttgtacaattatactattgttc-tttcatgcgctcttcagtggttaagcatccaatgcct 31127404  T
Q  146 tctaatttctctgaaata 163  Q
    | ||||| ||||||||||    
T  31127403 tataattcctctgaaata 31127386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 69 - 172
Target Start/End: Original strand, 25930485 - 25930589
Alignment:
Q  69 gagtagtggag-tagtggttgtgcaattgtactattttccatttaccgcactcttcaatggataagaatccaatgccttctaatttctctgaaatagcca 167  Q
    ||||||||||| |||||||||| ||||||||||||| ||| ||| |  | |||||||| | ||||| |||||||| |||| |||| ||||||| |||||     
T  25930485 gagtagtggagatagtggttgtacaattgtactattatccttttccaacgctcttcaaggaataagcatccaatgacttcaaattcctctgaattagccg 25930584  T
Q  168 ttgct 172  Q
    |||||    
T  25930585 ttgct 25930589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 119 - 214
Target Start/End: Complemental strand, 18026854 - 18026759
Alignment:
Q  119 tcttcaatggataagaatccaatgccttctaatttctctgaaatagccattgcttcatacttctacttcttctatagacttgtgtcttcaaataac 214  Q
    |||||| |||||||| |||||||||||||||||| |||||||||||   ||||| ||  |||||||| |||||  | ||||  |||||||||||||    
T  18026854 tcttcagtggataagcatccaatgccttctaattcctctgaaatagttgttgctccaggcttctactccttctgcaaactttagtcttcaaataac 18026759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 64 - 159
Target Start/End: Complemental strand, 16462793 - 16462698
Alignment:
Q  64 gagtggagtagtgga-gtagtggttgtgcaattgtactattttccatttaccgcactcttcaatggataagaatccaatgccttctaatttctctga 159  Q
    |||||||||| |||| ||||||||||| |||||||||||| | || ||| | || |||| || |||||||| ||||||||||||| |||| ||||||    
T  16462793 gagtggagtattggatgtagtggttgtacaattgtactatgt-ccttttcctgcgctctccagtggataagcatccaatgccttcaaattcctctga 16462698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 295 - 337
Target Start/End: Original strand, 13145415 - 13145457
Alignment:
Q  295 gtcttcagactctgacatgcaacataagcttcctttgtaaatt 337  Q
    |||||||||||||| | ||||||| ||||||||||||||||||    
T  13145415 gtcttcagactctgtcttgcaacacaagcttcctttgtaaatt 13145457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 312 - 373
Target Start/End: Original strand, 23231447 - 23231508
Alignment:
Q  312 tgcaacataagcttcctttgtaaattatattgctttcatttattcttttagaaccaatactt 373  Q
    ||||||| ||||||||||||||||||   ||||| || ||| |||||| |||||||||||||    
T  23231447 tgcaacacaagcttcctttgtaaattcctttgctctcttttgttctttcagaaccaatactt 23231508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 69 - 172
Target Start/End: Original strand, 23297958 - 23298062
Alignment:
Q  69 gagtagtggag-tagtggttgtgcaattgtactattttccatttaccgcactcttcaatggataagaatccaatgccttctaatttctctgaaatagcca 167  Q
    ||||||||||| |||| ||||| ||||||||||||| ||| ||| |  || ||  ||| | ||||||||| |||| |||| |||| || |||||||||||    
T  23297958 gagtagtggagatagtagttgtacaattgtactattgtccttttccaacattccccaaagaataagaatcaaatgtcttccaattcctatgaaatagcca 23298057  T
Q  168 ttgct 172  Q
    |||||    
T  23298058 ttgct 23298062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 55; Significance: 2e-22; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 46 - 168
Target Start/End: Original strand, 26703543 - 26703665
Alignment:
Q  46 tactatgtgcatacaagagagtggagtagtggagtagtggttgtgcaattgtactattttccatttaccgcactcttcaatggataagaatccaatgcct 145  Q
    ||||||||||| ||| || |||||| |||||||||| ||||||| ||| |||| |||| ||| ||| | || ||||||| |||||||| || ||||| ||    
T  26703543 tactatgtgcagacatgatagtggaatagtggagtaatggttgtacaaatgtagtattatcctttttctgcgctcttcagtggataagcatacaatgtct 26703642  T
Q  146 tctaatttctctgaaatagccat 168  Q
    |||||||||||||||||||||||    
T  26703643 tctaatttctctgaaatagccat 26703665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 73 - 214
Target Start/End: Complemental strand, 21683258 - 21683118
Alignment:
Q  73 agtggagtagtggttgtgcaattgtactattttccatttaccgcactcttcaatggataagaatccaatgccttctaatttctctgaaatagccattgct 172  Q
    ||||||||||||||| | |||||||||||| | || ||| | || ||||||| |||||||| |||||||||||||||||| || |||||||| | |||||    
T  21683258 agtggagtagtggttatacaattgtactatgt-ccttttcctgcgctcttcactggataagcatccaatgccttctaattcctttgaaatagtcgttgct 21683160  T
Q  173 tcatacttctacttcttctatagacttgtgtcttcaaataac 214  Q
    ||| ||||||| | |||||  |  ||||||||||||||||||    
T  21683159 tcagacttctattccttctgcaatcttgtgtcttcaaataac 21683118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 63 - 219
Target Start/End: Complemental strand, 26280134 - 26279978
Alignment:
Q  63 agagtggagtagtggagtagtggttgtgcaattgtactattttccatttaccgcactcttcaatggataagaatccaatgccttctaatttctctgaaat 162  Q
    |||||||||||  |||||||||||||| |||||||||||| | || |||   ||||||||||||||||||| |||||||| |||||||||  ||||||||    
T  26280134 agagtggagtaacggagtagtggttgtacaattgtactatgt-ccttttcatgcactcttcaatggataagcatccaatgacttctaattcatctgaaat 26280036  T
Q  163 agccattgcttcatacttctacttcttctatagacttgtgtcttc-aaataacaaaat 219  Q
    || | ||||| ||  |||||| | |||||| ||   ||||||||| ||||||||||||    
T  26280035 agtcgttgctccaggcttctattccttctacagtgatgtgtcttcaaaataacaaaat 26279978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 73 - 172
Target Start/End: Original strand, 16869978 - 16870077
Alignment:
Q  73 agtggagtagtggttgtgcaattgtactattttccatttaccgcactcttcaatggataagaatccaatgccttctaatttctctgaaatagccattgct 172  Q
    ||||||||| ||||||| |||||||||||| | |  ||| | || ||||| | |||||||| |||||||||||||||||| |||||||||||| ||||||    
T  16869978 agtggagtaatggttgtacaattgtactatgtcctttttcctgcgctctttagtggataagcatccaatgccttctaattcctctgaaatagcaattgct 16870077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 79 - 164
Target Start/End: Original strand, 23054388 - 23054472
Alignment:
Q  79 gtagtggttgtgcaattgtactattttccatttaccgcactcttcaatggataagaatccaatgccttctaatttctctgaaatag 164  Q
    ||||||||||| |||||||||||| | || ||| | || ||||||| |||||||  ||||||||||||||||||||||||||||||    
T  23054388 gtagtggttgtacaattgtactatgt-ccttttcctgcgctcttcattggataaacatccaatgccttctaatttctctgaaatag 23054472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 292 - 384
Target Start/End: Complemental strand, 21683028 - 21682936
Alignment:
Q  292 atggtcttcagactctgacatgcaacataagcttcctttgtaaattatattgctttcatttattcttttagaaccaatactttgttttaagac 384  Q
    |||||| ||||||||  || ||||||||| ||||||||||||||||  |||  | || ||| |||||| ||||||||||||||||||||||||    
T  21683028 atggtcctcagactcaaacttgcaacatatgcttcctttgtaaattccattattctcttttgttctttcagaaccaatactttgttttaagac 21682936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 266 - 317
Target Start/End: Original strand, 31359521 - 31359572
Alignment:
Q  266 cttcatactctgactatcagcttctaatggtcttcagactctgacatgcaac 317  Q
    ||||| ||||||||  ||||||||||||||||||||||||||||| ||||||    
T  31359521 cttcagactctgacagtcagcttctaatggtcttcagactctgacttgcaac 31359572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 283 - 373
Target Start/End: Complemental strand, 18516996 - 18516906
Alignment:
Q  283 cagcttctaatggtcttcagactctgacatgcaacataagcttcctttgtaaattatattgctttcatttattcttttagaaccaatactt 373  Q
    |||||||| ||||||||||||||||  | ||||||||||||||| ||||||  || ||||||| || ||| ||||||  || |||||||||    
T  18516996 cagcttctgatggtcttcagactctctcttgcaacataagcttcttttgtagtttctattgctctcttttgttctttcggagccaatactt 18516906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 73 - 166
Target Start/End: Complemental strand, 18130084 - 18129992
Alignment:
Q  73 agtggagtagtggttgtgcaattgtactattttccatttaccgcactcttcaatggataagaatccaatgccttctaatttctctgaaatagcc 166  Q
    ||||||||||||||||| |||||||||| | | || |||    | ||||||| |||||||| ||||||| |||||||||| |||||||||||||    
T  18130084 agtggagtagtggttgtacaattgtactgtgt-ccttttcatacgctcttcagtggataagcatccaataccttctaattcctctgaaatagcc 18129992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 296 - 389
Target Start/End: Original strand, 25399625 - 25399717
Alignment:
Q  296 tcttcagactctgacatgcaacataagcttcctttgtaaattatattgctttcatttattcttttagaaccaatactttgttttaagacctata 389  Q
    ||||||||||||||| |||||| || |||||  ||| |||||   ||||| | |||| ||||| ||||||||||||||||||||||||| ||||    
T  25399625 tcttcagactctgacttgcaac-taggcttctcttgaaaattcatttgctctaatttgttcttatagaaccaatactttgttttaagacatata 25399717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 128 - 164
Target Start/End: Complemental strand, 16478739 - 16478703
Alignment:
Q  128 gataagaatccaatgccttctaatttctctgaaatag 164  Q
    |||||| ||||||||||||||||||||||||||||||    
T  16478739 gataagcatccaatgccttctaatttctctgaaatag 16478703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 312 - 373
Target Start/End: Complemental strand, 18129809 - 18129748
Alignment:
Q  312 tgcaacataagcttcctttgtaaattatattgctttcatttattcttttagaaccaatactt 373  Q
    ||||||| ||| |||||||| |||||  |||||| |||||| |||||| |||||||||||||    
T  18129809 tgcaacacaaggttcctttgaaaatttcattgctctcatttgttctttcagaaccaatactt 18129748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 82 - 183
Target Start/End: Complemental strand, 20110003 - 20109903
Alignment:
Q  82 gtggttgtgcaattgtactattttccatttaccgcactcttcaatggataagaatccaatgccttctaatttctctgaaatagccattgcttcatacttc 181  Q
    |||||||| |||||||||||| | || |||   |||||||||||| ||| || |||||||||||||||||| || | |||||| | ||||| ||| ||||    
T  20110003 gtggttgtacaattgtactatgt-ccttttcttgcactcttcaatagatgagtatccaatgccttctaattcctttaaaatagtcgttgctccatgcttc 20109905  T
Q  182 ta 183  Q
    ||    
T  20109904 ta 20109903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043 (Bit Score: 52; Significance: 1e-20; HSPs: 3)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 286 - 389
Target Start/End: Complemental strand, 1745 - 1642
Alignment:
Q  286 cttctaatggtcttcagactctgacatgcaacataagcttcctttgtaaattatattgctttcatttattcttttagaaccaatactttgttttaagacc 385  Q
    ||||| ||| ||||||||||| ||| ||||||||  ||||||||||||||||  |||||| |||||| ||||| |||||||||||||||| ||||||||     
T  1745 cttctgatgatcttcagactcggacttgcaacatgtgcttcctttgtaaattccattgctctcatttgttcttctagaaccaatactttgatttaagact 1646  T
Q  386 tata 389  Q
    ||||    
T  1645 tata 1642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 314 - 389
Target Start/End: Complemental strand, 25507 - 25432
Alignment:
Q  314 caacataagcttcctttgtaaattatattgctttcatttattcttttagaaccaatactttgttttaagacctata 389  Q
    ||||||||||||||||||||||||  |||||| || ||| || ||  | |||||||||||||||||||||| ||||    
T  25507 caacataagcttcctttgtaaatttcattgctctcgtttgttattccaaaaccaatactttgttttaagacttata 25432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 73 - 169
Target Start/End: Complemental strand, 1934 - 1838
Alignment:
Q  73 agtggagtagtggttgtgcaattgtactattttccatttaccgcactcttcaatggataagaatccaatgccttctaatttctctgaaatagccatt 169  Q
    ||||||||||||||| | ||| ||||||| | ||| |||   || ||||| | |||||||| ||| ||||||||||| || ||||||||||| ||||    
T  1934 agtggagtagtggttatacaaatgtactagtgtccttttcatgcgctctttagtggataagtatctaatgccttctatttcctctgaaatagtcatt 1838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0351 (Bit Score: 51; Significance: 4e-20; HSPs: 2)
Name: scaffold0351
Description:

Target: scaffold0351; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 295 - 389
Target Start/End: Complemental strand, 9123 - 9029
Alignment:
Q  295 gtcttcagactctgacatgcaacataagcttcctttgtaaattatattgctttcatttattcttttagaaccaatactttgttttaagacctata 389  Q
    |||||||| ||||||| |||||||||||||||||||| |||||  |||||| || ||| |||||| ||||||||||||||| |||||||| ||||    
T  9123 gtcttcaggctctgacttgcaacataagcttcctttgcaaatttcattgctctcttttgttctttcagaaccaatactttgatttaagacttata 9029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0351; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 53 - 173
Target Start/End: Complemental strand, 9368 - 9252
Alignment:
Q  53 tgcatacaagagagtggagtagtggagtagtggttgtgcaattgtactattttccatttaccgcactcttcaatggataagaatccaatgccttctaatt 152  Q
    |||||||| |||||||||| |||||||||||||||||  |||||||||| | ||| ||| | || ||||||| |||   || ||||||||||||||||||    
T  9368 tgcatacatgagagtggaggagtggagtagtggttgtaaaattgtacta-tgtccttttcctgcgctcttcagtgg---agcatccaatgccttctaatt 9273  T
Q  153 tctctgaaatagccattgctt 173  Q
     ||| |||||| || ||||||    
T  9272 cctcagaaatatccgttgctt 9252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0683 (Bit Score: 49; Significance: 7e-19; HSPs: 1)
Name: scaffold0683
Description:

Target: scaffold0683; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 292 - 384
Target Start/End: Original strand, 619 - 711
Alignment:
Q  292 atggtcttcagactctgacatgcaacataagcttcctttgtaaattatattgctttcatttattcttttagaaccaatactttgttttaagac 384  Q
    ||||||||||||||||||| | |||||||||||| |||||||||||  |||||| |||||| || ||  ||||||||||||| ||||||||||    
T  619 atggtcttcagactctgactttcaacataagcttgctttgtaaattccattgctctcatttgttattacagaaccaatacttagttttaagac 711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0311 (Bit Score: 49; Significance: 7e-19; HSPs: 1)
Name: scaffold0311
Description:

Target: scaffold0311; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 64 - 164
Target Start/End: Original strand, 20074 - 20173
Alignment:
Q  64 gagtggagtagtggagtagtggttgtgcaattgtactattttccatttaccgcactcttcaatggataagaatccaatgccttctaatttctctgaaata 163  Q
    |||||||||||||||| ||||||||| ||||||||||| | ||| ||| | || |||||||||||||||| ||||||||| ||||||||  |||||||||    
T  20074 gagtggagtagtggagaagtggttgtacaattgtacta-tgtccttttcctgcgctcttcaatggataagcatccaatgctttctaattcttctgaaata 20172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 49; Significance: 7e-19; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 46 - 214
Target Start/End: Complemental strand, 19505611 - 19505444
Alignment:
Q  46 tactatgtgcatacaagagagtggagtagtggagtagtggttgtgcaattgtactattttccatttaccgcactcttcaatggataagaatccaatgcct 145  Q
    |||||| |||| |||||| ||||||||||||||||||||||||| ||||||||||||| ||| |||   |  ||||  | ||| |||| || ||||||||    
T  19505611 tactatatgcagacaagaaagtggagtagtggagtagtggttgtacaattgtactattgtcc-tttcatgagctctatagtgggtaagcattcaatgcct 19505513  T
Q  146 tctaatttctctgaaatagccattgcttcatacttctacttcttctatagacttgtgtcttcaaataac 214  Q
    ||||||| ||||||||||||| |||||  |   ||||| | |||||  | |||||||||||||||||||    
T  19505512 tctaattcctctgaaatagccgttgctcgaggattctattccttctgcaaacttgtgtcttcaaataac 19505444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 296 - 389
Target Start/End: Original strand, 12541884 - 12541977
Alignment:
Q  296 tcttcagactctgacatgcaacataagcttcctttgtaaattatattgctttcatttattcttttagaaccaatactttgttttaagacctata 389  Q
    ||||||||||||||| | |||| |||||||||||||||||||   ||||| |||||| |||||||||||||| ||||| |||| ||||| ||||    
T  12541884 tcttcagactctgacttacaacttaagcttcctttgtaaattcatttgctctcatttgttcttttagaaccagtacttagtttaaagacttata 12541977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 296 - 389
Target Start/End: Complemental strand, 1208554 - 1208461
Alignment:
Q  296 tcttcagactctgacatgcaacataagcttcctttgtaaattatattgctttcatttattcttttagaaccaatactttgttttaagacctata 389  Q
    ||||||||||| ||| ||||||||||||||||||||||||||  |||||| |||| |||||||  | ||||| ||| || ||||||||| ||||    
T  1208554 tcttcagactcagacttgcaacataagcttcctttgtaaatttcattgctctcatctattcttccaaaaccattacctttttttaagacttata 1208461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 64 - 164
Target Start/End: Original strand, 18558019 - 18558119
Alignment:
Q  64 gagtggagtagtggag-tagtggttgtgcaattgtactattttccatttaccgcactcttcaatggataagaatccaatgccttctaatttctctgaaat 162  Q
    ||||||| |||||||| || ||||||| |||||||||||| | || ||| | |||||||||| |||||||  ||||||||||||||||||||||||| ||    
T  18558019 gagtggaatagtggagatattggttgtacaattgtactatgt-ccttttcctgcactcttcagtggataaacatccaatgccttctaatttctctgatat 18558117  T
Q  163 ag 164  Q
    ||    
T  18558118 ag 18558119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 292 - 384
Target Start/End: Original strand, 22710861 - 22710954
Alignment:
Q  292 atggtcttcagactctgacatgcaacataagcttcctttgtaaa-ttatattgctttcatttattcttttagaaccaatactttgttttaagac 384  Q
    ||||||||||||||| ||| ||||  |||||||||||||||||| ||  |||||| |||||| || ||||||||||||  ||||||||||||||    
T  22710861 atggtcttcagactcagacttgcattataagcttcctttgtaaatttccattgctctcatttgttattttagaaccaaatctttgttttaagac 22710954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 292 - 370
Target Start/End: Complemental strand, 19505338 - 19505260
Alignment:
Q  292 atggtcttcagactctgacatgcaacataagcttcctttgtaaattatattgctttcatttattcttttagaaccaata 370  Q
    ||||||||||||||| ||| ||||||||||| ||||||| ||||||  |||||| |||||| |||||  ||||||||||    
T  19505338 atggtcttcagactcagacttgcaacataagtttcctttctaaatttcattgctctcatttgttcttccagaaccaata 19505260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 72 - 214
Target Start/End: Original strand, 12541635 - 12541777
Alignment:
Q  72 tagtggagtagtggttgtgcaattgtactattttccatttaccgcactc-ttcaatggataagaatccaatgccttctaatttctctgaaatagccattg 170  Q
    |||||||||||||||||| ||||||||||||| ||| ||  |    ||| ||||| |||||| ||||||||||||||||||| |||| |||||| | ||     
T  12541635 tagtggagtagtggttgtacaattgtactattatcctttctcttagctccttcaaaggataaaaatccaatgccttctaattcctctaaaatagtcgttt 12541734  T
Q  171 cttcatacttctacttcttctatagacttgtgtcttcaaataac 214  Q
    || ||  |||||| |||||||  | ||||||| |||||||||||    
T  12541735 ctccaggcttctatttcttctgcaaacttgtg-cttcaaataac 12541777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 251 - 309
Target Start/End: Original strand, 12541822 - 12541881
Alignment:
Q  251 ttcagactct-ggtggcttcatactctgactatcagcttctaatggtcttcagactctga 309  Q
    |||||||||| |||| ||||||||||||| | ||||||||| ||||||||||||||||||    
T  12541822 ttcagactctaggtgacttcatactctgattgtcagcttctgatggtcttcagactctga 12541881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0622 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: scaffold0622
Description:

Target: scaffold0622; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 46 - 172
Target Start/End: Complemental strand, 3525 - 3400
Alignment:
Q  46 tactatgtgcatacaagagagtggagtagtggagtagtggttgtgcaattgtactattttccatttaccgcactcttcaatggataagaatccaatgcct 145  Q
    |||||||||||  ||||  |||||| |||||||||||||||||| |||||||||||| |||  ||| | |  | ||| | |||||||| ||| |||||||    
T  3525 tactatgtgcaaccaaggtagtggaatagtggagtagtggttgtacaattgtactatgttct-tttcctgttccctttagtggataagcatcgaatgcct 3427  T
Q  146 tctaatttctctgaaatagccattgct 172  Q
    ||||||| |||||||||||||||||||    
T  3426 tctaattcctctgaaatagccattgct 3400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0622; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 292 - 337
Target Start/End: Complemental strand, 1723 - 1678
Alignment:
Q  292 atggtcttcagactctgacatgcaacataagcttcctttgtaaatt 337  Q
    |||||||||||||||  || |||||||||||||||||||| |||||    
T  1723 atggtcttcagactcatacttgcaacataagcttcctttgcaaatt 1678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0364 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: scaffold0364
Description:

Target: scaffold0364; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 64 - 164
Target Start/End: Complemental strand, 10511 - 10411
Alignment:
Q  64 gagtggagtagtggag-tagtggttgtgcaattgtactattttccatttaccgcactcttcaatggataagaatccaatgccttctaatttctctgaaat 162  Q
    |||||||||||||||| |||||||||| |||||||||||| | || ||| | || || |||| |||||||  ||||||||||||||||||||||||||||    
T  10511 gagtggagtagtggaggtagtggttgtacaattgtactatat-ccttttcctgcgcttttcagtggataaacatccaatgccttctaatttctctgaaat 10413  T
Q  163 ag 164  Q
    ||    
T  10412 ag 10411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 46; Significance: 4e-17; HSPs: 3)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 292 - 389
Target Start/End: Original strand, 116076 - 116173
Alignment:
Q  292 atggtcttcagactctgacatgcaacataagcttcctttgtaaattatattgctttcatttattcttttagaaccaatactttgttttaagacctata 389  Q
    |||||||||||||||  || |||||||||||||||||||| |||||  |||||| || ||| |||||| |||||||||| |||| |||||||| ||||    
T  116076 atggtcttcagactcaaacttgcaacataagcttcctttgcaaattccattgctctcttttcttctttcagaaccaatattttgatttaagacttata 116173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 292 - 389
Target Start/End: Original strand, 112466 - 112563
Alignment:
Q  292 atggtcttcagactctgacatgcaacataagcttcctttgtaaattatattgctttcatttattcttttagaaccaatactttgttttaagacctata 389  Q
    |||||||||||||||  || |||||||||||||||||||| |||||  |||  | || ||| |||||| |||||||||| |||| |||||||| ||||    
T  112466 atggtcttcagactcaaacttgcaacataagcttcctttgcaaattccatttatctcttttgttctttcagaaccaatattttgatttaagacttata 112563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 62 - 173
Target Start/End: Original strand, 112211 - 112318
Alignment:
Q  62 gagagtggagtagtggagtagtggttgtgcaattgtactattttccatttaccgcactcttcaatggataagaatccaatgccttctaatttctctgaaa 161  Q
    |||||||||| |||||||||||||||||  |||||||||| | ||| ||| | || ||||||| |||   || |||||||||||||||||| ||| ||||    
T  112211 gagagtggaggagtggagtagtggttgtaaaattgtacta-tgtccttttcctgcgctcttcagtgg---agcatccaatgccttctaattcctcagaaa 112306  T
Q  162 tagccattgctt 173  Q
    || || ||||||    
T  112307 tatccgttgctt 112318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0522 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: scaffold0522
Description:

Target: scaffold0522; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 64 - 164
Target Start/End: Complemental strand, 4371 - 4272
Alignment:
Q  64 gagtggagtagtggagtagtggttgtgcaattgtactattttccatttaccgcactcttcaatggataagaatccaatgccttctaatttctctgaaata 163  Q
    |||||||||||||||| ||||||||| ||||||||| || |||  ||| | || |||||||||||||||| ||||||||| ||||||||  |||||||||    
T  4371 gagtggagtagtggagaagtggttgtacaattgtacaatgttct-tttcctgcgctcttcaatggataagcatccaatgctttctaattcttctgaaata 4273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0522; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 64 - 164
Target Start/End: Complemental strand, 11654 - 11555
Alignment:
Q  64 gagtggagtagtggagtagtggttgtgcaattgtactattttccatttaccgcactcttcaatggataagaatccaatgccttctaatttctctgaaata 163  Q
    |||||||||||||||| ||||||||| ||||||||| || |||  ||| | || |||||||||||||||| ||||||||| ||||||||  |||||||||    
T  11654 gagtggagtagtggagaagtggttgtacaattgtacaatgttct-tttcctgcgctcttcaatggataagcatccaatgctttctaattcttctgaaata 11556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0388 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold0388
Description:

Target: scaffold0388; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 74 - 213
Target Start/End: Original strand, 5392 - 5532
Alignment:
Q  74 gtggagtagtggttgtgcaattgtactattttccatttaccgcact-cttcaatggataagaatccaatgccttctaatttctctgaaatagccattgct 172  Q
    |||||||||||||||| ||||||||||||| ||| ||  |||  || ||||| |||||||  ||||||||||||| |||| ||||||| ||||| |||||    
T  5392 gtggagtagtggttgtacaattgtactattgtcctttctccgagctccttcactggataaatatccaatgccttcaaattcctctgaattagccgttgct 5491  T
Q  173 tcatacttctacttcttctatagacttgtgtcttcaaataa 213  Q
     ||  |||||| | | |||  | ||||||||||||||||||    
T  5492 ccaggcttctattccatctgcaaacttgtgtcttcaaataa 5532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0092 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: scaffold0092
Description:

Target: scaffold0092; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 67 - 309
Target Start/End: Original strand, 8092 - 8324
Alignment:
Q  67 tggagtagtggagtagtggttgtgcaattgtactattttccatt-taccgcactcttcaatggataagaatccaatgccttctaatttctctgaaatagc 165  Q
    ||||||||||||||||||||||| ||||| ||||||| ||| || ||   |  ||| || |||||||  |||||||||||||||||| ||||||||||      
T  8092 tggagtagtggagtagtggttgtacaattatactattatcctttctatgaccttctccagtggataatcatccaatgccttctaattcctctgaaataat 8191  T
Q  166 cattgcttcatacttctacttcttctatagacttgtgtcttcaaataacaaaataaattgattttcaggttcaaactctgaaggtttcagactct-ggtg 264  Q
    | |||||||| |||  | ||||| | |   |||||||||||||||||||||| | || | ||||| ||||||   | ||       ||||||||| ||||    
T  8192 cgttgcttcagactattccttctgcaa---acttgtgtcttcaaataacaaacttaactaatttt-aggttctt-cact-------tcagactctaggtg 8279  T
Q  265 gcttcatactctgactatcagcttctaatggtcttcagactctga 309  Q
     ||||||||||||||| ||||||||| ||||||||||||||||||    
T  8280 acttcatactctgactgtcagcttctgatggtcttcagactctga 8324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0092; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 297 - 389
Target Start/End: Original strand, 8328 - 8419
Alignment:
Q  297 cttcagactctgacatgcaacataagcttcctttgtaaattatattgctttcatttattcttttagaaccaatactttgttttaagacctata 389  Q
    ||||||| ||| || |||||| ||||||||| ||||||||| | ||||| |||||| |||||| ||||||||||| |||||||||||| ||||    
T  8328 cttcagattcttacttgcaac-taagcttccgttgtaaattcttttgctctcatttgttctttcagaaccaataccttgttttaagacttata 8419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 69 - 172
Target Start/End: Complemental strand, 7488055 - 7487952
Alignment:
Q  69 gagtagtggag-tagtggttgtgcaattgtactattttccatttaccgcactcttcaatggataagaatccaatgccttctaatttctctgaaatagcca 167  Q
    ||||||||||| |||||||||| || |||||||||||||| ||| | || ||||||| |||||||| ||||||||||||| || | ||||||| ||| ||    
T  7488055 gagtagtggagatagtggttgtacagttgtactattttcctttt-ctgcgctcttcagtggataagcatccaatgccttcaaaatcctctgaattagtca 7487957  T
Q  168 ttgct 172  Q
    |||||    
T  7487956 ttgct 7487952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 64 - 152
Target Start/End: Complemental strand, 9064329 - 9064242
Alignment:
Q  64 gagtggagtagtggagtagtggttgtgcaattgtactattttccatttaccgcactcttcaatggataagaatccaatgccttctaatt 152  Q
    |||||||||||||||||| ||||||| |||||||||||| || | ||| | || ||||||| |||||||| || |||||||||||||||    
T  9064329 gagtggagtagtggagtaatggttgtacaattgtactatgtt-ctttttctgcgctcttcagtggataagcattcaatgccttctaatt 9064242  T

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Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 295 - 373
Target Start/End: Complemental strand, 9064053 - 9063975
Alignment:
Q  295 gtcttcagactctgacatgcaacataagcttcctttgtaaattatattgctttcatttattcttttagaaccaatactt 373  Q
    ||||||| |||||| | ||||||||||||||| ||||||||||  || ||| |||||| |||||| |||||||||||||    
T  9064053 gtcttcatactctgtcttgcaacataagcttcttttgtaaatttcatagctctcatttgttctttcagaaccaatactt 9063975  T

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Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 295 - 389
Target Start/End: Complemental strand, 11572169 - 11572076
Alignment:
Q  295 gtcttcagactctgacatgcaacataagcttcctttgtaaattatattgctttcatttattcttttagaaccaatactttgttttaagacctata 389  Q
    |||||||||||||||| |||||| ||||||||  ||||||||| | ||||| |||||| |||||  | ||||||||| |||||||||||| ||||    
T  11572169 gtcttcagactctgacttgcaac-taagcttctcttgtaaattcttttgctctcatttgttcttccataaccaataccttgttttaagacttata 11572076  T

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Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 64 - 185
Target Start/End: Complemental strand, 13172507 - 13172386
Alignment:
Q  64 gagtggagtagtggag-tagtggttgtgcaattgtactattttccatttaccgcactcttcaatggataagaatccaatgccttctaatttctctgaaat 162  Q
    |||||||||||||||| |||||||||| |||||||||||| | ||||||   ||  |||  | |||||||| |||||||||||||||||| |||||||||    
T  13172507 gagtggagtagtggaggtagtggttgtacaattgtactatgt-ccatttcatgcgatctcaagtggataagcatccaatgccttctaattactctgaaat 13172409  T
Q  163 agccattgcttcatacttctact 185  Q
    || | ||||| ||  ||||||||    
T  13172408 agtcgttgctccaggcttctact 13172386  T

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Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 65 - 141
Target Start/End: Original strand, 16412737 - 16412814
Alignment:
Q  65 agtggagtagtggagtagtggttgtgcaattgtactattttccatttaccg-cactcttcaatggataagaatccaat 141  Q
    |||||||||||||||| |||||||| ||||||||||||| ||| || || | || ||||||||||||||| |||||||    
T  16412737 agtggagtagtggagttgtggttgtacaattgtactattgtcctttcactgacattcttcaatggataagcatccaat 16412814  T

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Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 72 - 209
Target Start/End: Complemental strand, 18361728 - 18361592
Alignment:
Q  72 tagtggagtagtggttgtgcaattgtactattttccatttaccgcactcttcaatggataagaatccaatgccttctaatttctctgaaatagccattgc 171  Q
    ||||||| |||||||||| ||||||||||||| ||| ||| | || || || | |||||||| ||| |||||||||||||| |||||||||||   ||||    
T  18361728 tagtggaatagtggttgtacaattgtactattgtcc-tttcctgcgctttttagtggataagcatctaatgccttctaattcctctgaaatagttgttgc 18361630  T
Q  172 ttcatacttctacttcttctatagacttgtgtcttcaa 209  Q
    ||||  |||||| | |||||| |  | |||||||||||    
T  18361629 ttcaagcttctattccttctacaatcatgtgtcttcaa 18361592  T

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Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 73 - 152
Target Start/End: Complemental strand, 16105140 - 16105061
Alignment:
Q  73 agtggagtagtggttgtgcaattgtactattttccatttaccgcactcttcaatggataagaatccaatgccttctaatt 152  Q
    ||||||||| ||||||| |||||||| |||| ||  |||   || |||||||||||||||| ||||||||||||||||||    
T  16105140 agtggagtaatggttgtacaattgtaatattgtcattttcttgcgctcttcaatggataagcatccaatgccttctaatt 16105061  T

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Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 73 - 172
Target Start/End: Complemental strand, 18047980 - 18047882
Alignment:
Q  73 agtggagtagtggttgtgcaattgtactattttccatttaccgcactcttcaatggataagaatccaatgccttctaatttctctgaaatagccattgct 172  Q
    ||||||||||| ||||| |||||||||||| |||  |||   || |||||||  ||||||| || ||||||||||||||| |||||||||| ||||||||    
T  18047980 agtggagtagttgttgtacaattgtactatgttct-tttcttgcgctcttcagaggataagcattcaatgccttctaattcctctgaaatatccattgct 18047882  T

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Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 118 - 164
Target Start/End: Original strand, 5035431 - 5035477
Alignment:
Q  118 ctcttcaatggataagaatccaatgccttctaatttctctgaaatag 164  Q
    ||||||| |||||||| ||||||||||||||||||| ||||||||||    
T  5035431 ctcttcagtggataagcatccaatgccttctaatttatctgaaatag 5035477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 312 - 373
Target Start/End: Complemental strand, 16307582 - 16307521
Alignment:
Q  312 tgcaacataagcttcctttgtaaattatattgctttcatttattcttttagaaccaatactt 373  Q
    ||||||| ||||||||||||||||||  |||||| |||||| |||||  |||||||||||||    
T  16307582 tgcaacacaagcttcctttgtaaattccattgctctcatttgttcttccagaaccaatactt 16307521  T

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Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 305 - 389
Target Start/End: Complemental strand, 1878125 - 1878042
Alignment:
Q  305 tctgacatgcaacataagcttcctttgtaaattatattgctttcatttattcttttagaaccaatactttgttttaagacctata 389  Q
    |||||| |||||| ||||||||  ||| ||||| | ||||| ||| || |||||| |||||||||||||||||||||||| ||||    
T  1878125 tctgacttgcaac-taagcttctcttgaaaattcttttgctctcaattgttctttcagaaccaatactttgttttaagacttata 1878042  T

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Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 301 - 389
Target Start/End: Original strand, 4549931 - 4550018
Alignment:
Q  301 agactctgacatgcaacataagcttcctttgtaaattatattgctttcatttattcttttagaaccaatactttgttttaagacctata 389  Q
    |||||||||| || ||| ||||||||| ||| ||||| | ||||| || ||| |||||| ||||||||||||||| |||||||| ||||    
T  4549931 agactctgacttgtaac-taagcttcccttgaaaattcttttgctctcttttgttctttcagaaccaatactttgctttaagacatata 4550018  T

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Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 69 - 164
Target Start/End: Original strand, 16412000 - 16412096
Alignment:
Q  69 gagtagtggag-tagtggttgtgcaattgtactattttccatttaccgcactcttcaatggataagaatccaatgccttctaatttctctgaaatag 164  Q
    ||||||||||| || ||||||| ||||||||||||| ||| |||    | |||||||| | ||||| ||||||||||||  ||||||||||||||||    
T  16412000 gagtagtggagataatggttgtacaattgtactattgtccttttcgaacgctcttcaaagaataagcatccaatgcctttcaatttctctgaaatag 16412096  T

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Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 67 - 103
Target Start/End: Original strand, 25807389 - 25807425
Alignment:
Q  67 tggagtagtggagtagtggttgtgcaattgtactatt 103  Q
    ||||||||||||||||||||||| |||||||||||||    
T  25807389 tggagtagtggagtagtggttgtacaattgtactatt 25807425  T

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Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 312 - 389
Target Start/End: Complemental strand, 18361498 - 18361420
Alignment:
Q  312 tgcaacataagcttcctttgtaaattat-attgctttcatttattcttttagaaccaatactttgttttaagacctata 389  Q
    ||||||||||||||| ||| || |||   |||||| || ||| ||||||||||||||||||||||||| ||||| ||||    
T  18361498 tgcaacataagcttcatttctatatttccattgctctcttttgttcttttagaaccaatactttgtttcaagacttata 18361420  T

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Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 301 - 389
Target Start/End: Complemental strand, 15870987 - 15870900
Alignment:
Q  301 agactctgacatgcaacataagcttcctttgtaaattatattgctttcatttattcttttagaaccaatactttgttttaagacctata 389  Q
    |||||||||| |||||| ||||||||| |||||||||   ||||| | |||| | |||  ||||| |||||||||||||||||| ||||    
T  15870987 agactctgacttgcaac-taagcttcccttgtaaattcctttgctctaatttgtacttccagaacaaatactttgttttaagacttata 15870900  T

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Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 297 - 389
Target Start/End: Original strand, 23126176 - 23126267
Alignment:
Q  297 cttcagactctgacatgcaacataagcttcctttgtaaattatattgctttcatttattcttttagaaccaatactttgttttaagacctata 389  Q
    |||||||||| ||  |||||| ||||||||| ||||||||| | ||||| ||| || |||| | ||||||||||  |||||||||||| ||||    
T  23126176 cttcagactcagaattgcaac-taagcttcccttgtaaattcttttgctctcaattgttctatcagaaccaatatcttgttttaagacttata 23126267  T

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Target: scaffold0498 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: scaffold0498
Description:

Target: scaffold0498; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 65 - 213
Target Start/End: Complemental strand, 3411 - 3262
Alignment:
Q  65 agtggagtagtggagtagtggttgtgcaattgtactattttccatttaccgcactc-ttcaatggataagaatccaatgccttctaatttctctgaaata 163  Q
    ||||||||| ||||||||||||||| ||||| ||||||| ||| ||  |    ||| |||  |||||||| ||||||||||||| |||| ||||||||||    
T  3411 agtggagtaatggagtagtggttgtacaattttactattatcctttctcttagctccttctgtggataagcatccaatgccttcaaattcctctgaaata 3312  T
Q  164 gccattgcttcatacttctacttcttctatagacttgtgtcttcaaataa 213  Q
    | ||||||| || |||| || | |||||  | |||||||||||| |||||    
T  3311 gtcattgctccagacttttattccttctgcaaacttgtgtcttcgaataa 3262  T

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Target: scaffold0498; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 295 - 389
Target Start/End: Complemental strand, 3172 - 3079
Alignment:
Q  295 gtcttcagactctgacatgcaacataagcttcctttgtaaattatattgctttcatttattcttttagaaccaatactttgttttaagacctata 389  Q
    |||||||||||| ||| ||| ||||| |||||| ||| ||||||| ||||| ||||||||||||   ||||||||||  ||||| ||||| ||||    
T  3172 gtcttcagactcagacttgcgacata-gcttcccttgaaaattattttgctctcatttattcttcctgaaccaataccatgtttaaagacttata 3079  T

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Target: scaffold0040 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0040
Description:

Target: scaffold0040; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 71 - 208
Target Start/End: Complemental strand, 4119 - 3983
Alignment:
Q  71 gtagtggagtagtggttgtgcaattgtactattttccatttaccgcactcttcaatggataagaatccaatgccttctaatttctctgaaatagccattg 170  Q
    ||||||||||||||||||| ||||||||||| | ||| ||| | || |||||||| ||||||  ||| ||| |||||||||| || |||||||||| ||     
T  4119 gtagtggagtagtggttgtacaattgtacta-tgtcctttttctgcgctcttcaaaggataaacatcaaattccttctaattcctatgaaatagccgttc 4021  T
Q  171 cttcatacttctacttcttctatagacttgtgtcttca 208  Q
    || || ||||||| | |||||  |  ||||||||||||    
T  4020 ctccaaacttctattccttctgcaatcttgtgtcttca 3983  T

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Target: scaffold0003 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 65 - 141
Target Start/End: Original strand, 1449 - 1526
Alignment:
Q  65 agtggagtagtggagtagtggttgtgcaattgtactattttccatttaccg-cactcttcaatggataagaatccaat 141  Q
    |||||||||||||||| |||||||| ||||||||||||| ||| || || | || ||||||||||||||| |||||||    
T  1449 agtggagtagtggagttgtggttgtacaattgtactattgtcctttcactgacattcttcaatggataagcatccaat 1526  T

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Target: scaffold0003; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 69 - 164
Target Start/End: Original strand, 712 - 808
Alignment:
Q  69 gagtagtggag-tagtggttgtgcaattgtactattttccatttaccgcactcttcaatggataagaatccaatgccttctaatttctctgaaatag 164  Q
    ||||||||||| || ||||||| ||||||||||||| ||| |||    | |||||||| | ||||| ||||||||||||  ||||||||||||||||    
T  712 gagtagtggagataatggttgtacaattgtactattgtccttttcgaacgctcttcaaagaataagcatccaatgcctttcaatttctctgaaatag 808  T

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Target: scaffold0067 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0067
Description:

Target: scaffold0067; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 119 - 175
Target Start/End: Complemental strand, 16470 - 16414
Alignment:
Q  119 tcttcaatggataagaatccaatgccttctaatttctctgaaatagccattgcttca 175  Q
    |||||| ||| |||| ||||||||||||||||||||||| |||||| | ||||||||    
T  16470 tcttcagtgggtaagcatccaatgccttctaatttctctaaaatagtcgttgcttca 16414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0490 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0490
Description:

Target: scaffold0490; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 118 - 164
Target Start/End: Original strand, 7383 - 7429
Alignment:
Q  118 ctcttcaatggataagaatccaatgccttctaatttctctgaaatag 164  Q
    |||||||||||||||| ||||||||| ||||||||  ||||||||||    
T  7383 ctcttcaatggataagcatccaatgctttctaattcttctgaaatag 7429  T

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Target: scaffold1107 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold1107
Description:

Target: scaffold1107; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 119 - 175
Target Start/End: Complemental strand, 2410 - 2354
Alignment:
Q  119 tcttcaatggataagaatccaatgccttctaatttctctgaaatagccattgcttca 175  Q
    |||||| ||| |||| |||||||||||||||||| |||| |||||| | ||||||||    
T  2410 tcttcagtgggtaagcatccaatgccttctaattcctctaaaatagtcgttgcttca 2354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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