View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2695_low_9 (Length: 407)

Name: NF2695_low_9
Description: NF2695
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2695_low_9
NF2695_low_9
[»] chr2 (2 HSPs)
chr2 (10-225)||(12698200-12698415)
chr2 (290-391)||(12698038-12698139)
[»] chr1 (5 HSPs)
chr1 (304-391)||(45077866-45077953)
chr1 (304-391)||(45082162-45082249)
chr1 (301-391)||(45067076-45067166)
chr1 (10-63)||(47984886-47984939)
chr1 (301-392)||(45074632-45074726)
[»] chr7 (2 HSPs)
chr7 (301-389)||(34504404-34504492)
chr7 (14-100)||(44157464-44157550)
[»] chr4 (1 HSPs)
chr4 (14-99)||(33614644-33614729)
[»] chr3 (1 HSPs)
chr3 (156-205)||(30333857-30333906)


Alignment Details
Target: chr2 (Bit Score: 148; Significance: 5e-78; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 10 - 225
Target Start/End: Complemental strand, 12698415 - 12698200
Alignment:
Q  10 attattctgttagttaacttgacatgtcatttgactgtctatgtgacactgtcatatgtttgacgtgtcatgccaagttacatgtggtaatgnnnnnnng 109  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||       |    
T  12698415 attattctgttagttaacttgacatgtcatttgactgtctacgtgacactgccatatgtttgacgtgtcatgccaagttacatgtggtaatgtttttttg 12698316  T
Q  110 atagtttttactattgttacagttatnnnnnnnnncatacatttcattggtgtcatcgaagaagacgaacatgatttattaggtttgttacaatttaaag 209  Q
    ||||||||||||||||||| ||||||         ||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||    
T  12698315 atagtttttactattgttatagttataaaaaaaaacatacatttcattggtgtcttcgaagaagacaaacatgatttattaggtttgttacaatttaaag 12698216  T
Q  210 atcataatatttatac 225  Q
    ||||||||||||||||    
T  12698215 atcataatatttatac 12698200  T

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Target: chr2; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 290 - 391
Target Start/End: Complemental strand, 12698139 - 12698038
Alignment:
Q  290 gcactgatgttatgtttctggagttacaagtaacgtggttcctaaaccatgtgaattgctgctagcgaagggaattgaatgtccttttccaacagttaaa 389  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12698139 gcactgatgttatgtttctggagttacaagtaacgtggttcctaaaccatgtgaattgctgctagcgaagggaattgaatgtccttttccaacagttaaa 12698040  T
Q  390 ct 391  Q
    ||    
T  12698039 ct 12698038  T

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Target: chr1 (Bit Score: 68; Significance: 3e-30; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 304 - 391
Target Start/End: Complemental strand, 45077953 - 45077866
Alignment:
Q  304 tttctggagttacaagtaacgtggttcctaaaccatgtgaattgctgctagcgaagggaattgaatgtccttttccaacagttaaact 391  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||| || ||||| ||||||||||||||||||||||| ||||||    
T  45077953 tttctggagttacaagtaatgtggttcctaaaccatgtgaattgctgcaagagaaggaaattgaatgtccttttccaacagataaact 45077866  T

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Target: chr1; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 304 - 391
Target Start/End: Complemental strand, 45082249 - 45082162
Alignment:
Q  304 tttctggagttacaagtaacgtggttcctaaaccatgtgaattgctgctagcgaagggaattgaatgtccttttccaacagttaaact 391  Q
    ||||||||||||||||||| ||||||||||||||||||||| |||||  || ||||| |||||||||||||||||||| || ||||||    
T  45082249 tttctggagttacaagtaatgtggttcctaaaccatgtgaactgctgaaagagaaggaaattgaatgtccttttccaagagataaact 45082162  T

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Target: chr1; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 301 - 391
Target Start/End: Complemental strand, 45067166 - 45067076
Alignment:
Q  301 atgtttctggagttacaagtaacgtggttcctaaaccatgtgaattgctgctagcgaagggaattgaatgtccttttccaacagttaaact 391  Q
    |||||||||||||| ||||||| | ||||||||||||||||||  |||||| || ||||  ||| ||||||||||||||||||| ||||||    
T  45067166 atgtttctggagttgcaagtaatgcggttcctaaaccatgtgatatgctgccagagaagaaaatcgaatgtccttttccaacagataaact 45067076  T

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Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 10 - 63
Target Start/End: Original strand, 47984886 - 47984939
Alignment:
Q  10 attattctgttagttaacttgacatgtcatttgactgtctatgtgacactgtca 63  Q
    |||||||||||||| ||| ||||||| |||| ||||||||| ||||||||||||    
T  47984886 attattctgttagtcaacgtgacatgacattcgactgtctacgtgacactgtca 47984939  T

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Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 301 - 392
Target Start/End: Complemental strand, 45074726 - 45074632
Alignment:
Q  301 atgtttctggagttacaagtaacgtggttcctaaaccatgtgaattgctgctagcgaagggaa---ttgaatgtccttttccaacagttaaactt 392  Q
    |||||||||||||||||||||| |||  ||||| ||| ||||||||||||  || ||| | ||   ||||||||||||||||||| | |||||||    
T  45074726 atgtttctggagttacaagtaatgtgagtcctacaccctgtgaattgctggcagagaaagaaaaatttgaatgtccttttccaactgataaactt 45074632  T

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Target: chr7 (Bit Score: 49; Significance: 7e-19; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 301 - 389
Target Start/End: Complemental strand, 34504492 - 34504404
Alignment:
Q  301 atgtttctggagttacaagtaacgtggttcctaaaccatgtgaattgctgctagcgaagggaattgaatgtccttttccaacagttaaa 389  Q
    |||||||||||||||||||||| ||||||||||||||||||||  |||||  || ||||  |||||||||||| |||||||||| ||||    
T  34504492 atgtttctggagttacaagtaatgtggttcctaaaccatgtgatctgctgtcagagaagaaaattgaatgtccctttccaacagataaa 34504404  T

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Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 14 - 100
Target Start/End: Original strand, 44157464 - 44157550
Alignment:
Q  14 ttctgttagttaacttgacatgtcatttgactgtctatgtgacactgtcatatgtttgacgtgtcatgccaagttacatgtggtaat 100  Q
    |||||||||| ||| | ||||| |||||||||||||| ||||||||||||  ||| ||| ||||||||||| || |||||| |||||    
T  44157464 ttctgttagtcaacataacatgacatttgactgtctacgtgacactgtcacgtgtctgatgtgtcatgccacgtcacatgttgtaat 44157550  T

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Target: chr4 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 14 - 99
Target Start/End: Original strand, 33614644 - 33614729
Alignment:
Q  14 ttctgttagttaacttgacatgtcatttgactgtctatgtgacactgtcatatgtttgacgtgtcatgccaagttacatgtggtaa 99  Q
    |||||||||| ||| |||| || |||||||||||||||||| ||||| ||  ||||||||||||||||||| || ||| |||||||    
T  33614644 ttctgttagtcaacatgacgtggcatttgactgtctatgtggcactgccacgtgtttgacgtgtcatgccacgtcacaggtggtaa 33614729  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 156 - 205
Target Start/End: Complemental strand, 30333906 - 30333857
Alignment:
Q  156 ttggtgtcatcgaagaagacgaacatgatttattaggtttgttacaattt 205  Q
    |||||||||| ||| ||||  ||||||||||||||||||||||| |||||    
T  30333906 ttggtgtcattgaaaaagataaacatgatttattaggtttgttataattt 30333857  T

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