View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2696_high_10 (Length: 555)
Name: NF2696_high_10
Description: NF2696
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2696_high_10 |
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Alignment Details
Target: chr4 (Bit Score: 449; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 449; E-Value: 0
Query Start/End: Original strand, 11 - 541
Target Start/End: Complemental strand, 150373 - 149843
Alignment:
| Q |
11 |
gatgaagtgacctttaaaattggttatccaaaagctgccactgaactagcaaaaagtaagttactaaatagtgaaaatggacgttttaaacgactagtcg |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
150373 |
gatgaagtgacctttaaaattggttatccaaaagctgccactgaactagcaaaaagtaagttactaaatagtgaaaatggacgttttaaacgactagtcg |
150274 |
T |
|
| Q |
111 |
cggctcctatcattggtcggaatgtattagaaatgtacttagagcgtattgaggatattgtgatcaacaagctagaagaattgtctagcatgaaacactc |
210 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
150273 |
cggctcctatcattggtcggaatgtattagaaatgtacttagagcgtattgaggatattgtgatcaacaagctagaagaattgtctagcatgaaacaccc |
150174 |
T |
|
| Q |
211 |
tattgagttccttatggagattagaaaagcttcttttgaattcgtcattcacattttcttaggctcttgtgatcaaagtaacgtaaagaaatttggagat |
310 |
Q |
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| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
150173 |
tgttgagttccttatggagatgagaaaagcttcttttgaattcgtcattcacattttcttaggctcttgtgatcaaagtaacgtaaagaaatttggagat |
150074 |
T |
|
| Q |
311 |
ctgtttaatgttatgtgtattgcattgttctctttggtgcctataaatgtacctggttttgcgtacaacaaggcattaaaggttcgttaattatattttc |
410 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| |||||||||||||||||||||||||||| |
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| T |
150073 |
ttgtttaatgttatgtgtattgcattgttctctttggtgcccataaatgtacctggttttgcttacaacaaagcattaaaggttcgttaattatattttc |
149974 |
T |
|
| Q |
411 |
tactccattttttctactataattattgttatgaatatctctgaannnnnnnnnnnnnnnnnncatggctaatttaggcacgtatgaagtttgtcaagat |
510 |
Q |
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| T |
149973 |
tactccattttttctactataattattgttatgaatatctctgaattttttatttttacttttcatggctaatttaggcacgtatgaagtttgtcaagat |
149874 |
T |
|
| Q |
511 |
agtgcaatatattatttatgaaaggagaatg |
541 |
Q |
| |
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| T |
149873 |
agtgcaatatattatttatgaaaggagaatg |
149843 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 183; E-Value: 1e-98
Query Start/End: Original strand, 10 - 408
Target Start/End: Complemental strand, 130541 - 130143
Alignment:
| Q |
10 |
agatgaagtgacctttaaaattggttatccaaaagctgccactgaactagcaaaaagtaagttactaaatagtgaaaatggacgttttaaacgactagtc |
109 |
Q |
| |
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|||||||||||| ||||| ||||||||||||||| | ||| |||| ||| | |||||| | ||| ||| ||| ||||||||||||| |||||| |
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| T |
130541 |
agatgaagtgacttttaagattggttatccaaaatccgcccttgaattaggcgatagtaagattctacataaagaacgcggacgttttaaacaactagta |
130442 |
T |
|
| Q |
110 |
gcggctcctatcattggtcggaatgtattagaaatgtacttagagcgtattgaggatattgtgatcaacaagctagaagaattgtctagcatgaaacact |
209 |
Q |
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| T |
130441 |
tcatctcctatcaatggtcacaatgtattagaaatgtacttagagcgtattgaggatattgtgatcaacaagctagaagaattgtctagcatgaaacacc |
130342 |
T |
|
| Q |
210 |
ctattgagttccttatggagattagaaaagcttcttttgaattcgtcattcacattttcttaggctcttgtgatcaaagtaacgtaaagaaatttggaga |
309 |
Q |
| |
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|| |||||||||||| |||||| | ||||||||||||||||||||||||||||||||||| | |||||| |||||| || ||| || ||| ||||||| |
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| T |
130341 |
ctgttgagttccttacggagatgaagaaagcttcttttgaattcgtcattcacattttctttgactcttgcgatcaagataccgtgaacaaaattggaga |
130242 |
T |
|
| Q |
310 |
tctgtttaatgttatgtgtattgcattgttctctttggtgcctataaatgtacctggttttgcgtacaacaaggcattaaaggttcgttaattatattt |
408 |
Q |
| |
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| | |||||||||||| ||||||| ||||| ||||| |||| |||||||||||||||||||| |||||||| ||||||||||||||||| || ||||| |
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| T |
130241 |
tttatttaatgttatgagtattgccttgttatctttcatgcccataaatgtacctggttttgcatacaacaaagcattaaaggttcgttacttctattt |
130143 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 143; E-Value: 7e-75
Query Start/End: Original strand, 115 - 421
Target Start/End: Original strand, 10304330 - 10304636
Alignment:
| Q |
115 |
tcctatcattggtcggaatgtattagaaatgtacttagagcgtattgaggatattgtgatcaacaagctagaagaattgtctagcatgaaacactctatt |
214 |
Q |
| |
|
||||||||||||| |||||||||||| || |||||||| |||||||| |||||||||||||||||| |||||||||| || || ||||||||| || || |
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| T |
10304330 |
tcctatcattggtaggaatgtattagtaaaatacttagaacgtattgaagatattgtgatcaacaagttagaagaattatccagtatgaaacaccctgtt |
10304429 |
T |
|
| Q |
215 |
gagttccttatggagattagaaaagcttcttttgaattcgtcattcacattttcttaggctcttgtgatcaaagtaacgtaaagaaatttggagatctgt |
314 |
Q |
| |
|
|||||||| ||||||| ||||||||||||||| ||||| |||||||||||||||| ||||||||||||||| ||| || ||||||| ||||||| | | |
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| T |
10304430 |
gagttcctcgtggagatgagaaaagcttcttttaaattcatcattcacattttcttgggctcttgtgatcaaggtaccgaaaagaaaattggagaattat |
10304529 |
T |
|
| Q |
315 |
ttaatgttatgtgtattgcattgttctctttggtgcctataaatgtacctggttttgcgtacaacaaggcattaaaggttcgttaattatattttctact |
414 |
Q |
| |
|
||||||||||| ||| |||||||||| ||||| |||| ||||||| |||||| ||||| | ||| | ||||||||||||||||| || ||||||||| |
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| T |
10304530 |
ttaatgttatgagtaatgcattgttcactttgatgcccataaatgcacctggctttgctttcaagagagcattaaaggttcgttacttctattttctatc |
10304629 |
T |
|
| Q |
415 |
ccatttt |
421 |
Q |
| |
|
||||||| |
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| T |
10304630 |
ccatttt |
10304636 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 164 - 231
Target Start/End: Original strand, 892416 - 892482
Alignment:
| Q |
164 |
gatattgtgatcaacaagctagaagaattgtctagcatgaaacactctattgagttccttatggagat |
231 |
Q |
| |
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||||||||||||||||||||||||||||| || | |||| ||||| || ||||||||| ||||||||| |
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| T |
892416 |
gatattgtgatcaacaagctagaagaattatccatcatggaacaccctcttgagttcc-tatggagat |
892482 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 109; Significance: 1e-54; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 11 - 399
Target Start/End: Complemental strand, 3959596 - 3959208
Alignment:
| Q |
11 |
gatgaagtgacctttaaaattggttatccaaaagctgccactgaactagcaaaaagtaagttactaaatagtgaaaatggacgttttaaacgactagtcg |
110 |
Q |
| |
|
|||||||| |||||||| |||||||||||||||| ||||| ||||||| | | || | ||||||||| |||| | |||||||| |||||||||||| |
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| T |
3959596 |
gatgaagtaacctttaagcttggttatccaaaagccatcactgtactagcatacaatagggtactaaataatgaacacggacgtttaaaacgactagtca |
3959497 |
T |
|
| Q |
111 |
cggctcctatcattggtcggaatgtattagaaatgtacttagagcgtattgaggatattgtgatcaacaagctagaagaattgtctagcatgaaacactc |
210 |
Q |
| |
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|||||||||| ||| ||||||| | |||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | |
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| T |
3959496 |
cggctcctattgccggtaacaatgtatcaacaatgtatctagagcgtattgaggatattgtgatcaacaagcttgaagaattgtctagcatgaaacaccc |
3959397 |
T |
|
| Q |
211 |
tattgagttccttatggagattagaaaagcttcttttgaattcgtcattcacattttcttaggctcttgtgatcaaagtaacgtaaagaaatttggagat |
310 |
Q |
| |
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| ||||||| |||| ||||| || ||| ||| ||| | ||| || |||| ||||| |||||||| |||||| ||| | |||| ||| || |||| |
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| T |
3959396 |
tgttgagtttcttaaagagatgaggaaaatttcctttaacttcatctttcaaatttttacgggctcttgcgatcaaggtaccataaataaaatttcagat |
3959297 |
T |
|
| Q |
311 |
ctgtttaatgttatgtgtattgcattgttctctttggtgcctataaatgtacctggttttgcgtacaacaaggcattaaaggttcgtta |
399 |
Q |
| |
|
| ||| |||||||| ||| ||| |||||||||||| |||| |||||||||||||||||||| | |||||| ||| | ||||||||||| |
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|
| T |
3959296 |
ttatttgatgttatgggtagtgccttgttctctttgatgcccataaatgtacctggttttgctttcaacaaagcactcaaggttcgtta |
3959208 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 474 - 541
Target Start/End: Complemental strand, 3959112 - 3959045
Alignment:
| Q |
474 |
catggctaatttaggcacgtatgaagtttgtcaagatagtgcaatatattatttatgaaaggagaatg |
541 |
Q |
| |
|
|||| |||||||||||||||| |||||||| ||| ||||| ||| |||||||| |||||||||||||| |
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|
| T |
3959112 |
catgactaatttaggcacgtaagaagtttgccaaaatagttcaaaatattattgatgaaaggagaatg |
3959045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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