View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2696_high_11 (Length: 551)
Name: NF2696_high_11
Description: NF2696
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2696_high_11 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 512; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 512; E-Value: 0
Query Start/End: Original strand, 18 - 537
Target Start/End: Original strand, 43360167 - 43360686
Alignment:
| Q |
18 |
attagaaggagtctctctctgattaacttcgacaattcaactactagatttgttggtttgaattgtgaaccttgatgatcacaaactctatcttgttgca |
117 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43360167 |
attagaaggagtccctctctgattaacttcgacaattcaactactagatttgttggtttgaattgtgaaccttgatgatcacaaactctatcttgttgca |
43360266 |
T |
|
| Q |
118 |
taggttatggaaatattatacttaaatttgtagacctgttttataaattgtttatgacttcaataaaatccttgtttgtccatttttcaatagttacgtt |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43360267 |
taggttatggaaatattatacttaaatttgtagacctgttttataaattgtttatgacttcaataaaatccttgtttgtccatttttcaatagttacgtt |
43360366 |
T |
|
| Q |
218 |
gttgtatgctaaattcatattctatgtatgctcagtgcagaagagtgaatattgtacattagtgtttctcatgtgctaatttatgatttaatggatgacc |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43360367 |
gttgtatgctaaattcatattctatgtatgctcagtgcagaagagtgaatattgtacattagtgtttctcatgtgctaatttatgatttaatggatgacc |
43360466 |
T |
|
| Q |
318 |
tctttgacgcaaaagcatggacagagattatattagtagttgatttctcaaagtaatcggtgtaaattagtattaggaggtaaattagtagtttatttct |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43360467 |
tctttgacgcaaaagcatggacagagattatattagtagttgatttctcaaagtaatcggtgtaaattagtattaggaggtaaattagtagtttatttct |
43360566 |
T |
|
| Q |
418 |
caaggggaatgattgtgtactgcctaataactactgaaattaacaagataaaatttcagaacacgagagaattacctgctgaagcacaattaaagaggtt |
517 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43360567 |
caaggggaatgattgtgtactgcctaataactactgaaagtaacaagataaaatttcagaacacgagagaattacctgctgaagcacaattaaagaggtt |
43360666 |
T |
|
| Q |
518 |
acggtgacttctgctctgtg |
537 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
43360667 |
acggtgacttctgctctgtg |
43360686 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 259 - 340
Target Start/End: Original strand, 43362688 - 43362768
Alignment:
| Q |
259 |
agagtgaatattgtacattagtgtttctcatgtgctaatttatgatttaatggatgacctctttgacgcaaaagcatggaca |
340 |
Q |
| |
|
|||||||| ||||||||| |||||||||||||||||| || | |||| ||| ||||||||||||||||||||||||||||| |
|
|
| T |
43362688 |
agagtgaaagttgtacatttgtgtttctcatgtgctaaatt-taatttgatgcatgacctctttgacgcaaaagcatggaca |
43362768 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 312 - 383
Target Start/End: Complemental strand, 17637674 - 17637603
Alignment:
| Q |
312 |
atgacctctttgacgcaaaagcatggacagagattatattagtagttgatttctcaaagtaatcggtgtaaa |
383 |
Q |
| |
|
|||||||||||||| |||||| ||||||| |||||| || ||||||||||||||||||| || |||||||| |
|
|
| T |
17637674 |
atgacctctttgacccaaaagtatggacaaagattaaatcagtagttgatttctcaaaggaacaggtgtaaa |
17637603 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 269 - 306
Target Start/End: Complemental strand, 49432368 - 49432331
Alignment:
| Q |
269 |
ttgtacattagtgtttctcatgtgctaatttatgattt |
306 |
Q |
| |
|
|||||||||||||||| ||||||||||| ||||||||| |
|
|
| T |
49432368 |
ttgtacattagtgtttttcatgtgctaaattatgattt |
49432331 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University