View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2696_high_14 (Length: 545)
Name: NF2696_high_14
Description: NF2696
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2696_high_14 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 134; Significance: 2e-69; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 310 - 527
Target Start/End: Complemental strand, 5808742 - 5808539
Alignment:
| Q |
310 |
cccaattgtatggcagacatcttgtaagtgaaactatgttgtgccctttgttttcggtggtgtcgataatttaaaaattaaattgcaaatagttgacaaa |
409 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5808742 |
cccaattgtatggcagacatcttgtaagtgaaactatgctgtgccctttgttttaggtggtgtcgataatttaaaaattaaattgcaaatagttgacaaa |
5808643 |
T |
|
| Q |
410 |
cttattattcttcaggtgatagagagagcgaaagaaggtgatcgaagtttggaggaactacaggctcggactgcgctgctcaatataatgaacatagcg- |
508 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
5808642 |
cttattattcttcag------------------gaaggtgatcgaagtttggaggaactacaggctcggactgcgctgctcaatataatgaacatagagg |
5808561 |
T |
|
| Q |
509 |
---gatatcaatatgctaataa |
527 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
5808560 |
atcgatatcaatatgctaataa |
5808539 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 108; Significance: 5e-54; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 163 - 342
Target Start/End: Original strand, 38611616 - 38611795
Alignment:
| Q |
163 |
ttccttccattcatgtttgttggctcgaaaccatgaagattaaatgtttaaaattgccaatgaagtttggaaattatagaggctatgcttttgttgagta |
262 |
Q |
| |
|
|||||| || ||||||||| ||||| ||||| || |||||||| ||||||||||||||||||||||||||| ||||||||| ||||||||| ||||| |
|
|
| T |
38611616 |
ttcctttcactcatgtttgatggcttaaaaccgtgcagattaaaaaattaaaattgccaatgaagtttggaaatcatagaggctttgcttttgtggagta |
38611715 |
T |
|
| Q |
263 |
tgttacccagcaggaggcacaaagtgctcttacagctctctcaagcacccaattgtatggcagacatcttgtaagtgaaa |
342 |
Q |
| |
|
|||||| |||||||||||||||| |||||||||||| |||||||||||||| ||||||||||||||||| |||||||||| |
|
|
| T |
38611716 |
tgttactcagcaggaggcacaaaatgctcttacagcactctcaagcacccacttgtatggcagacatctggtaagtgaaa |
38611795 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 199 - 344
Target Start/End: Complemental strand, 37735436 - 37735291
Alignment:
| Q |
199 |
agattaaatgtttaaaattgccaatgaagtttggaaattatagaggctatgcttttgttgagtatgttacccagcaggaggcacaaagtgctcttacagc |
298 |
Q |
| |
|
|||||||| |||||| ||| |||||||||||||||||| ||||||| | ||||||||| ||||||||||| |||||||||||||||| ||| |||||||| |
|
|
| T |
37735436 |
agattaaaagtttaagattaccaatgaagtttggaaatcatagaggatttgcttttgtggagtatgttactcagcaggaggcacaaaatgcacttacagc |
37735337 |
T |
|
| Q |
299 |
tctctcaagcacccaattgtatggcagacatcttgtaagtgaaact |
344 |
Q |
| |
|
|||||||| ||||| ||||||||||||||||| |||||||||||| |
|
|
| T |
37735336 |
actctcaagtacccacttgtatggcagacatctggtaagtgaaact |
37735291 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 190 - 344
Target Start/End: Complemental strand, 37750914 - 37750760
Alignment:
| Q |
190 |
aaaccatgaagattaaatgtttaaaattgccaatgaagtttggaaattatagaggctatgcttttgttgagtatgttacccagcaggaggcacaaagtgc |
289 |
Q |
| |
|
||||| || |||||||| |||||| ||| |||||||||||||||||| ||||||| | ||||||||| ||||||||||| |||||||||||||||| ||| |
|
|
| T |
37750914 |
aaaccgtgcagattaaaagtttaagattaccaatgaagtttggaaatcatagaggatttgcttttgtggagtatgttactcagcaggaggcacaaaatgc |
37750815 |
T |
|
| Q |
290 |
tcttacagctctctcaagcacccaattgtatggcagacatcttgtaagtgaaact |
344 |
Q |
| |
|
|||||||| |||||||| ||||| |||||||| |||||||| |||||||||||| |
|
|
| T |
37750814 |
acttacagcactctcaagtacccacttgtatggaagacatctggtaagtgaaact |
37750760 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 5 - 111
Target Start/End: Original strand, 38611408 - 38611514
Alignment:
| Q |
5 |
agttgagaaagacaagagttcaactaagttgcttgtgaaaaatattccttttgaggcaacaaagaaggatctgagacaattgtttagcccgtttgggcag |
104 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||| || ||||||||||||||||||||||||||||||| || |||||||| ||||| ||| |
|
|
| T |
38611408 |
agttgagaaagacaagagttcaactaagttgcttgtgagaaatgttgcttttgaggcaacaaagaaggatctgagacagttatttagcccatttggccag |
38611507 |
T |
|
| Q |
105 |
gtgatta |
111 |
Q |
| |
|
||||||| |
|
|
| T |
38611508 |
gtgatta |
38611514 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 5 - 109
Target Start/End: Complemental strand, 37751141 - 37751037
Alignment:
| Q |
5 |
agttgagaaagacaagagttcaactaagttgcttgtgaaaaatattccttttgaggcaacaaagaaggatctgagacaattgtttagcccgtttgggcag |
104 |
Q |
| |
|
|||||||||||| ||||||||||||| ||||| |||||||||| || ||||||||||| ||||||||||||||||||||| |||||||||||||| ||| |
|
|
| T |
37751141 |
agttgagaaagataagagttcaactacgttgcatgtgaaaaatgttgtttttgaggcaataaagaaggatctgagacaattatttagcccgtttggccag |
37751042 |
T |
|
| Q |
105 |
gtgat |
109 |
Q |
| |
|
||||| |
|
|
| T |
37751041 |
gtgat |
37751037 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 5 - 111
Target Start/End: Complemental strand, 37735656 - 37735550
Alignment:
| Q |
5 |
agttgagaaagacaagagttcaactaagttgcttgtgaaaaatattccttttgaggcaacaaagaaggatctgagacaattgtttagcccgtttgggcag |
104 |
Q |
| |
|
|||||||||||| ||||||||||| ||||| |||||||||||| || | |||||||||||| ||||||| ||||||||||| |||||||||||||| ||| |
|
|
| T |
37735656 |
agttgagaaagataagagttcaaccaagttacttgtgaaaaatgttgcctttgaggcaacagagaaggacctgagacaattatttagcccgtttggccag |
37735557 |
T |
|
| Q |
105 |
gtgatta |
111 |
Q |
| |
|
||||||| |
|
|
| T |
37735556 |
gtgatta |
37735550 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 420 - 516
Target Start/End: Complemental strand, 37735173 - 37735082
Alignment:
| Q |
420 |
ttcaggtgatagagagagcgaaagaaggtgatcgaagtttggaggaactacaggctcggactgcgctgctcaatataatgaacatagcggatatcaa |
516 |
Q |
| |
|
||||||| ||||||||||||||||||||||| |||||||||||||| | |||||| ||| |||||||||| |||||||||||| |||| |||| |
|
|
| T |
37735173 |
ttcaggtaatagagagagcgaaagaaggtga---gagtttggaggaactgcgggctcgaact--gctgctcaatttaatgaacatagtggatttcaa |
37735082 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University