View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2696_high_19 (Length: 461)
Name: NF2696_high_19
Description: NF2696
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2696_high_19 |
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Alignment Details
Target: chr8 (Bit Score: 280; Significance: 1e-156; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 280; E-Value: 1e-156
Query Start/End: Original strand, 15 - 442
Target Start/End: Complemental strand, 29697129 - 29696703
Alignment:
| Q |
15 |
cagagaagagaaagtgcaatgataatgcagttaaaatagaacccgtgaacagaagaatactaagcatttgtgcccacatcaacattaataccaccaaatt |
114 |
Q |
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| T |
29697129 |
cagagaagagatagcacaatgataatgcggttaaaatagagctcgtgaacagaagaatagtaagcatttgtgtccatatcaactttaatactattaaatt |
29697030 |
T |
|
| Q |
115 |
gaatctattagctagagcaaactactactactgcaaaaatggaaaaacaaattaaaagatcacctgtaatctatgcatgctacaatgatatctctctccg |
214 |
Q |
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| T |
29697029 |
gaatctattagccagagcaaactactact---gcaaaaatgggaaaacaaattaaaagatcacctgtaatctatgcatgctacaatgatatctctctccg |
29696933 |
T |
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| Q |
215 |
aaagctgttgacctaaaagagaaccccatgctttgtaactgcacaaataccaatacctcaaaacttgtaaggactgaagtgactttacatgtggtgaagg |
314 |
Q |
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| T |
29696932 |
aaagctgttgacctaaaagagaaccccatgctttgtaactgcacaaatacaaatacttcaaaacttgtaaggactgaagtgactttacatgtggagaaag |
29696833 |
T |
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| Q |
315 |
tgaatgtgtgtgcgcgtgtgactagacacacaaacacatgaatcagttgaaaaatggaactagtagcgtatggtaaatatcaaattcgacaaggnnnnnn |
414 |
Q |
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| T |
29696832 |
tgaatgtgtgtgcgtatgtctctagacacacaaacacatgaatccgttcaaaaatgaaactagtagcgtatggtaaatatcaaattcgacaaggaaaaaa |
29696733 |
T |
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| Q |
415 |
ntatggacat--catacccaataatccagg |
442 |
Q |
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| T |
29696732 |
atatggacatcacatacccaataatccagg |
29696703 |
T |
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