View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2696_high_2 (Length: 754)
Name: NF2696_high_2
Description: NF2696
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2696_high_2 |
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Alignment Details
Target: chr7 (Bit Score: 279; Significance: 1e-156; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 366 - 738
Target Start/End: Original strand, 5065241 - 5065614
Alignment:
| Q |
366 |
gactatcaaaaatagaagttcacgatctttcttataataacgtctaagtcactgtcttagtcgtga-aacgagaaagactttgaacttctaattttaaag |
464 |
Q |
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| T |
5065241 |
gactatcaaaagtaaaagttcacggtctttcttataataacgtctaagtcactgtcttagtcgtgagaacgagaaagactttgaacttctaattttaaag |
5065340 |
T |
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| Q |
465 |
aacgacattgatgtttttgacggttaatgaaaagatattacaacgctacttactgcgcgagtaaacctcatagacttgagatcattacaatctataggat |
564 |
Q |
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| T |
5065341 |
aacgacatagatgtttttgacagttaatgaaaagatattacaacgctacttactgctcgagtaaacctcatagacttgagatcattacaatctataggat |
5065440 |
T |
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| Q |
565 |
cttctggctttttcctttctctaatagcaaaatgctctttctgcaagatatcaatattcaatattatcacacactttataatnnnnnnnnnnnnnnnnnn |
664 |
Q |
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| T |
5065441 |
cttctggctttttcctttctctaatagcaaaatgctctttctgcaagatatcaatattcaatattatcacacactttataataaaaaaatctcaaataaa |
5065540 |
T |
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| Q |
665 |
nnngcaataatgataacttttccacataccctcatttcatcaagaactttaggatgatcatgcaggtactttac |
738 |
Q |
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| T |
5065541 |
aaagcaataatgataacttttccacataccctcatttcatcaagaactttaggatgatcatgcaggtactttac |
5065614 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 167 - 367
Target Start/End: Original strand, 5065007 - 5065207
Alignment:
| Q |
167 |
catttttcttgagcccatcaacataaatacataagagctagagaaatgaaataggccactcaaaaaactcaccatttaattccatgtcatgagttgtttt |
266 |
Q |
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| T |
5065007 |
catttttcttgagcccatcaacataaatacataagagctagagaaatgaaataggccactcaaaaaactcaccatttaattccatgtcatgagttgtttt |
5065106 |
T |
|
| Q |
267 |
tctcagaactccattaactatagtagctaatctcgaggtctcaaaaatcacctgcaaaagacacaatttaatggaaaaatcaatcttaatagcattgtgg |
366 |
Q |
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| T |
5065107 |
tctcagaactccattaactatagtagctaatctcgaggtctcaaaaatcacctgcaaaagacacaatttaatggaaaaatcaatcttaatagcattgtgg |
5065206 |
T |
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| Q |
367 |
a |
367 |
Q |
| |
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| T |
5065207 |
a |
5065207 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 6 - 130
Target Start/End: Original strand, 5064847 - 5064971
Alignment:
| Q |
6 |
agtgagatgaaaagggtctagttggaatgttgaaagagtggtcaatgccatgtgaacaattacacaatcctagggatgaatgaatttctttttctggcta |
105 |
Q |
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| T |
5064847 |
agtgaaatgaaaagggtctagttggaatgttgaaagagtggtcaatgccatgtgaacaattacacaatcctagggatgaatgaatttctttttctggcta |
5064946 |
T |
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| Q |
106 |
ctgtttaacaagctttattgatact |
130 |
Q |
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| T |
5064947 |
ctgtttaacaagctttattgatact |
5064971 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.000000000001; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 237 - 319
Target Start/End: Original strand, 5589045 - 5589127
Alignment:
| Q |
237 |
accatttaattccatgtcatgagttgtttttctcagaactccattaactatagtagctaatctcgaggtctcaaaaatcacct |
319 |
Q |
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| T |
5589045 |
accatttagttccatatcttgagtggttttccttagaactccattaactattgtggccaatctagatgtctcaaaaatcacct |
5589127 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 513 - 615
Target Start/End: Original strand, 5589207 - 5589309
Alignment:
| Q |
513 |
cttactgcgcgagtaaacctcatagacttgagatcattacaatctataggatcttctggctttttcctttctctaatagcaaaatgctctttctgcaaga |
612 |
Q |
| |
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||||| || |||||||||||||| || ||||||||||| |||| || || || | |||||||||||| ||||| || || ||||||||||||||||| | |
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| T |
5589207 |
cttaccgcacgagtaaacctcattgatttgagatcattggaatcaattggttcatttggctttttcctctctcttatggccaaatgctctttctgcaaca |
5589306 |
T |
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| Q |
613 |
tat |
615 |
Q |
| |
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||| |
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| T |
5589307 |
tat |
5589309 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000007; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 237 - 319
Target Start/End: Original strand, 973853 - 973935
Alignment:
| Q |
237 |
accatttaattccatgtcatgagttgtttttctcagaactccattaactatagtagctaatctcgaggtctcaaaaatcacct |
319 |
Q |
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| T |
973853 |
accatttagttccatatcttgagtggttttccttagaactccattaactattgtggccaatctagttgtctcaaaaataacct |
973935 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 513 - 615
Target Start/End: Original strand, 974010 - 974112
Alignment:
| Q |
513 |
cttactgcgcgagtaaacctcatagacttgagatcattacaatctataggatcttctggctttttcctttctctaatagcaaaatgctctttctgcaaga |
612 |
Q |
| |
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| T |
974010 |
cttaccgcacgagtaaacttcattgatttgagatcattggaatcaattggttcatttggttttttcctctctcttatggccaaatgctctttctgcaaca |
974109 |
T |
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| Q |
613 |
tat |
615 |
Q |
| |
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||| |
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| T |
974110 |
tat |
974112 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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