View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2696_high_20 (Length: 460)
Name: NF2696_high_20
Description: NF2696
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2696_high_20 |
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Alignment Details
Target: chr6 (Bit Score: 368; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 23 - 442
Target Start/End: Complemental strand, 29839945 - 29839526
Alignment:
| Q |
23 |
cagagagagtagtactatgtaggaagacataataaccaagtataacgacgcaaataactgagaggaaaagcgtataccttagcttcaacatatttccatt |
122 |
Q |
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| T |
29839945 |
cagagagagtagtactatgctggaagacataataaccaagtataacgacataaataactgagaggaaaagcgtataccttagcttcaacatatttccatt |
29839846 |
T |
|
| Q |
123 |
tcacaagaaggtgatgtttttctccccatccattcgctagcggaaggttcataatgttatcttgagcctgtaaaacagaacaatgtaagtaatcaaatca |
222 |
Q |
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| T |
29839845 |
tcacaagaaggtgatgtttttctccccatccattcgctagcggaaggttcataatgttatcttgagcctgtaaaacagaacaatgtaagtaatcaaatca |
29839746 |
T |
|
| Q |
223 |
attttttctgaacaaatgcacacaagttaaagacataaaaagagcttattgaataaaaacaaacatatctaaggacaaaataaatgttatgacacaatgc |
322 |
Q |
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| T |
29839745 |
attttttctgaacaaatgcacacatgttaaagacataaaaagagcttattgaataaaaacaaacatatctaaggacaaaataaatgttatgacacaatgc |
29839646 |
T |
|
| Q |
323 |
agacctaaaaggaaacaagtcgaacatcccataagaaattttcgacataaggnnnnnnnncagtcaagtacggatctcatatcataagaaacaagttatc |
422 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||| |
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| T |
29839645 |
agacctaaaaggaaacaagtcgaacatcccataagaaattttcgacataagcaaaaaaaacagttaagtacggatctcatatcataagaaacaagttatc |
29839546 |
T |
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| Q |
423 |
atacctgttgccaacatttc |
442 |
Q |
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| T |
29839545 |
atacctgttgccaacatttc |
29839526 |
T |
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Target: chr1 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 135 - 192
Target Start/End: Original strand, 34625322 - 34625379
Alignment:
| Q |
135 |
gatgtttttctccccatccattcgctagcggaaggttcataatgttatcttgagcctg |
192 |
Q |
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|||||||||| ||||| |||||||||| |||||| ||||||||||||||||| ||||| |
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| T |
34625322 |
gatgtttttcaccccaaccattcgctaacggaagattcataatgttatcttgtgcctg |
34625379 |
T |
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