View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2696_high_21 (Length: 455)
Name: NF2696_high_21
Description: NF2696
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2696_high_21 |
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Alignment Details
Target: chr4 (Bit Score: 386; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 18 - 447
Target Start/End: Original strand, 2816277 - 2816705
Alignment:
| Q |
18 |
gaaataagttaaaattacattcgggttgaagaaagcttacaaagaggactcaaatatcaacattcatacatattcggttccaatatacacatttaaattc |
117 |
Q |
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| T |
2816277 |
gaaataagttaaaattatattcgggttgaagaaagcttacaaagaggactcaaatatcaacattcatacatattcggttccaatatacacatttaaattc |
2816376 |
T |
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| Q |
118 |
attcaacacacacaatttcgatattcatacatatttattttctcatcaaagtcataaaaagtcatataagtcatgggagtcataattgctacggtattta |
217 |
Q |
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| T |
2816377 |
attcaacacacacaatttcgatattcatagatatttattttctcatcaaagtcataaaaagtcatctaagtcatgggagtcataattgctacggtattta |
2816476 |
T |
|
| Q |
218 |
aataccgatatacgtcgttcatcagaaaaattaggaaaaatcaaaatacatagtcataataatgtcccctttctacgtgtgactcgaaacatattgatcg |
317 |
Q |
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| T |
2816477 |
aataccgatatacgttgttcgtcagaaaaattgggaaaaatcaaaatacatagtcataataatgtcccctttctacgtgtgactcgaaacagattgatcg |
2816576 |
T |
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| Q |
318 |
gctatgtttcatgggaaatttatttcataataccatatagatcatcataattttttatgccatccaacactatggtctgaaccagcccgcatatctacaa |
417 |
Q |
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| T |
2816577 |
gctatgtttcatgggaaatttatttcataataccatatagatcatcataattttttatgccat-cgacactatggtccgaaccagcccgcatatctacaa |
2816675 |
T |
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| Q |
418 |
agtgtccagagtatcattttcattcttctc |
447 |
Q |
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| T |
2816676 |
agtgtccagagtatcattttcattcttctc |
2816705 |
T |
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