View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2696_high_22 (Length: 455)
Name: NF2696_high_22
Description: NF2696
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2696_high_22 |
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Alignment Details
Target: chr5 (Bit Score: 358; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 1 - 448
Target Start/End: Original strand, 38867341 - 38867797
Alignment:
| Q |
1 |
tgagtcactcagttcatatcagtgattattcatgcatcacaatattcaaaattgttggaatatatcaaacaaacaactaataatttctttgatattttgt |
100 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38867341 |
tgagtcactcagttcatatcaatgattattcatgcatcacaatattcaaaattgttggaatatatcaaacaaacaactaataatttctttgatattttgt |
38867440 |
T |
|
| Q |
101 |
cctctaaaaaatgtggaatatatcacatttgttctctaaaaattgaataatcacttagaccttgtttcacccgatgaccaatcaaagtttatcatatccc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38867441 |
cctctaaaaaatgtggaatatatcacatttgttctctaaaaattgaataatcacttagaccttgtttcacccgatgaccaatcaaagtttatcatatccc |
38867540 |
T |
|
| Q |
201 |
caaccaccattccaccctttatatcctccccttgtctggttcgaacaaaatcaaggcaatgatatggtgaatgtctgtgtgaactgtgaagggtcta-tt |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| || |
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| T |
38867541 |
caaccaccattccaccctttatatcctccccttgtctggttcgaacaaaatcaaggcaatgatatggtgagtgtctgtgtgaactgtgaagggtctattt |
38867640 |
T |
|
| Q |
300 |
cagaagaatgaaactaaatagtaaatagtagttgaataaaatacatacagtttgagaagttcatgcttcaaaagaatgaaacagc--------nnnnnnn |
391 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| | | |||||||| |||||||||| ||||||||||| |
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| T |
38867641 |
cagaagaatgaaactaaatagtaaatagtagttgaataaaatacatacaatatcagaagttcctgcttcaaaaaaatgaaacagccaaaaaaaaaaaaaa |
38867740 |
T |
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| Q |
392 |
nnncatcaaataacactcattcaacccctttcaatctagaaatatggagtattattt |
448 |
Q |
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| T |
38867741 |
aaacatcaaataacactcattcaacccctttcaatctagaaatatggagtatcattt |
38867797 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 38805707 - 38805639
Alignment:
| Q |
1 |
tgagtcactcagttcatatcagtgattattcatgcatcacaatattcaaaattgttggaatatatcaaa |
69 |
Q |
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|||||||||||||||| |||| |||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
38805707 |
tgagtcactcagttcacatcaaagattattcatgcattacaatattcaaaattgttggaatatatcaaa |
38805639 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 401 - 448
Target Start/End: Original strand, 38598698 - 38598745
Alignment:
| Q |
401 |
ataacactcattcaacccctttcaatctagaaatatggagtattattt |
448 |
Q |
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| T |
38598698 |
ataacactcattcaacccctttcaatctaacaatatggagtattattt |
38598745 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 404 - 448
Target Start/End: Complemental strand, 39953790 - 39953746
Alignment:
| Q |
404 |
acactcattcaacccctttcaatctagaaatatggagtattattt |
448 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
39953790 |
acactcattcaacccctttcaatctagcaatatggagtattattt |
39953746 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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