View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2696_high_27 (Length: 418)
Name: NF2696_high_27
Description: NF2696
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2696_high_27 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 380; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 17 - 408
Target Start/End: Complemental strand, 37558607 - 37558216
Alignment:
| Q |
17 |
atggcttcggatggtttgattatatattttttgcagcaaagtgatcaaacattgctgagttcgaaatcctagttcataacacaaaggaagtagatatctg |
116 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37558607 |
atggcttcggaaggtttgattatatattttttgcagcaaagtgatcaaacattgctgagtttgaaatcctagttcataacacaaaggaagtagatatctg |
37558508 |
T |
|
| Q |
117 |
aaggcatttcctttcccattttattattgatcaatcatttccttttcattcacgatttcagtttcggtttttcctaaacacactcaggattattgctagt |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37558507 |
aaggcatttcctttcccattttattattgatcaatcatttccttttcattcacgatttcagtttcggtttttcctaaacacactcaggattattgctagt |
37558408 |
T |
|
| Q |
217 |
aaatcaaagaaaaatccagtagcttcactaacactcatatccgttacttcagaccatggatacggcttcactggttttgttgcttcaagaagaatctcca |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
37558407 |
aaatcaaagaaaaatccagtagcttcactaacactcatatccgttacttcagaccatggatacggcttcactggttttgttgcttcaagaagaacctcca |
37558308 |
T |
|
| Q |
317 |
atggaatctttggttttgacctttccataggaaccgtgtaatgatagtatttctctgggtctggacaaagatcctgcagaatttcacctttg |
408 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37558307 |
atggaatctttggttttgacctttccataggaaccgtgtaatgatagtatttctctgggtctggacaaagatcctgcagaatttcacctttg |
37558216 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University