View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2696_high_28 (Length: 408)
Name: NF2696_high_28
Description: NF2696
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2696_high_28 |
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Alignment Details
Target: chr2 (Bit Score: 334; Significance: 0; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 19 - 394
Target Start/End: Complemental strand, 27443463 - 27443091
Alignment:
| Q |
19 |
atattgctataaattatggtagagtggcaatgttcatgtaccaacatggagacggccataccattcaagatactgaaatgcaaaatcgcataatgtcatt |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27443463 |
atattgctataaattatggtagagtggcaatgttcatgtaccaacatggagacggccataccattcaagatactgaaatgcaaaatcgcataatgtcatt |
27443364 |
T |
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| Q |
119 |
aatttttcggcccattccataaaaggttttgtcgtggagacggcgggtgttatatttattagcaataaagatagaaaaggaaagttaagacgaagaatga |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||| | ||||||| ||||||||||||||||||||||||||||||||||||| | |||||| |
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| T |
27443363 |
catttttcggcccattccataaaaggttttgtcgtggagacag---gtgttatgtttattagcaataaagatagaaaaggaaagttaagactaggaatga |
27443267 |
T |
|
| Q |
219 |
agtacacattactagttgagttacatttgtaatttcaatttcatttcgtgcttatttagttagttatgacagtaatgatgagctgatactgctcaagtga |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
27443266 |
agtacacattactagttgagttacatttgtaatttcaatttcatttcgtgcttatttagttagttatgacagtaatgatgagctgataatgctcaagtga |
27443167 |
T |
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| Q |
319 |
atatttcgtgcttgtacaattcacgttatattgaatcagaaattcagttttcatatttgtttctcaaagttcatct |
394 |
Q |
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| T |
27443166 |
atatttcgtgcttgtacaattcaccttatattgaatcagaaattcagttttcatatttgtttctcaaagttcatct |
27443091 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 19 - 141
Target Start/End: Complemental strand, 27406216 - 27406096
Alignment:
| Q |
19 |
atattgctataaattatggtagagtggcaatgttcatgtaccaacatggagacggccataccattcaagatactgaaatgcaaaatcgcataatgtcatt |
118 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||| ||| |||||||||||| |
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| T |
27406216 |
atattgctataaattatgatagagtggcaatgttcatgtaccaacatggagacggccattccattcaagatactgatatgcaacatcacataatgtcatt |
27406117 |
T |
|
| Q |
119 |
aatttttcggcccattccataaa |
141 |
Q |
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|| ||||||||||||||||||| |
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| T |
27406116 |
aa--tttcggcccattccataaa |
27406096 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 85 - 141
Target Start/End: Complemental strand, 27442841 - 27442785
Alignment:
| Q |
85 |
aagatactgaaatgcaaaatcgcataatgtcattaatttttcggcccattccataaa |
141 |
Q |
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|||||||||| |||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
27442841 |
aagatactgatatgcaaaatcacataatgtcattaatttttcggcccattccataaa |
27442785 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 242 - 302
Target Start/End: Complemental strand, 25079606 - 25079546
Alignment:
| Q |
242 |
catttgtaatttcaatttcatttcgtgcttatttagttagttatgacagtaatgatgagct |
302 |
Q |
| |
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|||||| || |||| |||||||||| ||| |||||||||||||| ||||| |||||||||| |
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| T |
25079606 |
catttgaaaattcagtttcatttcgcgctcatttagttagttatcacagttatgatgagct |
25079546 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 41 - 73
Target Start/End: Complemental strand, 27443059 - 27443027
Alignment:
| Q |
41 |
agtggcaatgttcatgtaccaacatggagacgg |
73 |
Q |
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|||||||||||||||| |||||||||||||||| |
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| T |
27443059 |
agtggcaatgttcatgcaccaacatggagacgg |
27443027 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 48 - 125
Target Start/End: Original strand, 18845615 - 18845692
Alignment:
| Q |
48 |
atgttcatgtaccaacatggagacggccataccattcaagatactgaaatgcaaaatcgcataatgtcattaattttt |
125 |
Q |
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||||||||||||||| ||||||| || ||| ||||| |||| || ||||||| |||||||| ||||||||| ||||| |
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| T |
18845615 |
atgttcatgtaccaatatggagatggttatagcattccagatcctaaaatgcagaatcgcattatgtcattagttttt |
18845692 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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