View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2696_high_29 (Length: 408)
Name: NF2696_high_29
Description: NF2696
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2696_high_29 |
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Alignment Details
Target: chr8 (Bit Score: 158; Significance: 6e-84; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 158; E-Value: 6e-84
Query Start/End: Original strand, 12 - 203
Target Start/End: Complemental strand, 29392407 - 29392214
Alignment:
| Q |
12 |
agtgagaagaatgctgcaagttcatgaaataataaattttatcaaacttacatat--tttaatcatataaacttatctataattaagctagtgggttgtc |
109 |
Q |
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| T |
29392407 |
agtgaaaagaatgctgcaagttcatgaaataataaattttatcaaacttacatatattttaatcatataaacttatctataattaagctagtgggttgtc |
29392308 |
T |
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| Q |
110 |
cttgcnnnnnnnttacctaaatttcatttctcatgtgattcttcttggtgcagccgtggcacctcaccagaacacacgcactcacttaaagatg |
203 |
Q |
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| T |
29392307 |
cttgcaaaaaaattacctaaatttcatttctcatgtgattcttcttggtgcagccgtggcacctcaccagaacacacgcactcacttaaagatg |
29392214 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 131; E-Value: 8e-68
Query Start/End: Original strand, 235 - 394
Target Start/End: Complemental strand, 29392182 - 29392023
Alignment:
| Q |
235 |
atgcataaattaaaatacaataaaaaactaacaatataatatagtg--acttgacccatcccgaataaagcatcacatgaaattagtactagattactaa |
332 |
Q |
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| T |
29392182 |
atgcataaattaaaatacaataaaaaactaacaatataatatagtgtgacttgacccatcccgaataa-gcatcacatgaactt-gtactagattactaa |
29392085 |
T |
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| Q |
333 |
aagaagtttatatgcaagttaatgtgtatgttttgtttcatttttaagatgtcaatattgat |
394 |
Q |
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| T |
29392084 |
aagaagtttatatgcaagttaatgtgtatgttttgtttcatttttaagatgtcaatattgat |
29392023 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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