View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2696_high_32 (Length: 396)

Name: NF2696_high_32
Description: NF2696
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2696_high_32
NF2696_high_32
[»] chr3 (8 HSPs)
chr3 (92-381)||(25505722-25506011)
chr3 (9-66)||(25506036-25506093)
chr3 (334-381)||(21914092-21914139)
chr3 (342-381)||(19126550-19126589)
chr3 (342-381)||(53633638-53633677)
chr3 (335-381)||(17588356-17588402)
chr3 (335-381)||(40520746-40520792)
chr3 (344-380)||(1575973-1576009)
[»] chr2 (6 HSPs)
chr2 (343-381)||(7772481-7772519)
chr2 (342-381)||(32091192-32091231)
chr2 (335-381)||(7640652-7640698)
chr2 (335-381)||(40099404-40099450)
chr2 (336-381)||(10991537-10991582)
chr2 (333-381)||(11560490-11560538)
[»] chr1 (8 HSPs)
chr1 (335-381)||(31092655-31092701)
chr1 (342-381)||(35473953-35473992)
chr1 (342-381)||(37944151-37944190)
chr1 (342-381)||(47719128-47719167)
chr1 (335-381)||(64699-64745)
chr1 (335-381)||(1408429-1408475)
chr1 (335-381)||(9639838-9639884)
chr1 (334-380)||(27127217-27127263)
[»] chr5 (3 HSPs)
chr5 (332-381)||(39914892-39914941)
chr5 (332-381)||(27679489-27679538)
chr5 (342-382)||(34702491-34702531)
[»] scaffold0533 (1 HSPs)
scaffold0533 (342-381)||(8872-8911)
[»] chr6 (4 HSPs)
chr6 (342-381)||(9977058-9977097)
chr6 (342-380)||(11713667-11713705)
chr6 (340-381)||(6503259-6503300)
chr6 (333-381)||(3808139-3808187)
[»] chr4 (4 HSPs)
chr4 (334-381)||(27537741-27537788)
chr4 (335-381)||(29910455-29910501)
chr4 (335-381)||(46676519-46676565)
chr4 (335-381)||(56497629-56497675)
[»] scaffold0009 (1 HSPs)
scaffold0009 (342-380)||(63642-63680)
[»] chr8 (1 HSPs)
chr8 (335-381)||(8984515-8984561)
[»] scaffold0238 (1 HSPs)
scaffold0238 (336-381)||(25384-25429)


Alignment Details
Target: chr3 (Bit Score: 266; Significance: 1e-148; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 92 - 381
Target Start/End: Complemental strand, 25506011 - 25505722
Alignment:
Q  92 ttgttgcataatatgtcataattgttgctgatgtgtgtgatttgatttgatttttcagcatgatcttacttctccggtgaagacagattcttctttttgg 191  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25506011 ttgttgcataatatgtcataattgttgctgatgtgtgtgatttgatttgatttttcagcatgatcttacttctccggtgaagacagattcttctttttgg 25505912  T
Q  192 actttaggtatgtaaaagtttttgctttaactaatatattgatatttgtgactgtttttgtgttatgaataaaattgaaactgaaataatatgattagtt 291  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||    
T  25505911 actttaggtatgtaaaagtttttgctttaactaatatattcatatttgtgactgtttttgtgttatgaataaaatttaaaatgaaataatatgattagtt 25505812  T
Q  292 tgggtttggaattaattggataggattaatttgggtttggttagtccccatgagcttaactcaatttgtaaggataatgcataatatatg 381  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||    
T  25505811 tgggtttggaattaattggacaggattaatttgggtttggttagtccccatgagcttaactcagtttgtaaggacaatgcataatatatg 25505722  T

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Target: chr3; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 9 - 66
Target Start/End: Complemental strand, 25506093 - 25506036
Alignment:
Q  9 gtccaagaatattgaacttggtatcaaaggcaatcctccatttctcaatgtaacccta 66  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25506093 gtccaagcatattgaacttggtatcaaaggcaatcctccatttctcaatgtaacccta 25506036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 334 - 381
Target Start/End: Complemental strand, 21914139 - 21914092
Alignment:
Q  334 agtccccatgagcttaactcaatttgtaaggataatgcataatatatg 381  Q
    ||||||||||||||||||||| || ||||||| |||||||||||||||    
T  21914139 agtccccatgagcttaactcagttggtaaggacaatgcataatatatg 21914092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 342 - 381
Target Start/End: Original strand, 19126550 - 19126589
Alignment:
Q  342 tgagcttaactcaatttgtaaggataatgcataatatatg 381  Q
    ||||||||||||| || |||||||||||||||||||||||    
T  19126550 tgagcttaactcagttagtaaggataatgcataatatatg 19126589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 342 - 381
Target Start/End: Complemental strand, 53633677 - 53633638
Alignment:
Q  342 tgagcttaactcaatttgtaaggataatgcataatatatg 381  Q
    ||||||||||||| || |||||||||||||||||||||||    
T  53633677 tgagcttaactcagttggtaaggataatgcataatatatg 53633638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 335 - 381
Target Start/End: Original strand, 17588356 - 17588402
Alignment:
Q  335 gtccccatgagcttaactcaatttgtaaggataatgcataatatatg 381  Q
    |||||| ||||||||||||| || ||||||| |||||||||||||||    
T  17588356 gtccccgtgagcttaactcagttggtaaggacaatgcataatatatg 17588402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 335 - 381
Target Start/End: Original strand, 40520746 - 40520792
Alignment:
Q  335 gtccccatgagcttaactcaatttgtaaggataatgcataatatatg 381  Q
    |||| ||||||||||||||| |||||| ||||||||||||| |||||    
T  40520746 gtcctcatgagcttaactcagtttgtatggataatgcataaaatatg 40520792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 344 - 380
Target Start/End: Complemental strand, 1576009 - 1575973
Alignment:
Q  344 agcttaactcaatttgtaaggataatgcataatatat 380  Q
    ||||||||||||||||||  |||||||||||||||||    
T  1576009 agcttaactcaatttgtatagataatgcataatatat 1575973  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 343 - 381
Target Start/End: Complemental strand, 7772519 - 7772481
Alignment:
Q  343 gagcttaactcaatttgtaaggataatgcataatatatg 381  Q
    ||||||||||||||| |||||||||||||||||||||||    
T  7772519 gagcttaactcaattggtaaggataatgcataatatatg 7772481  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 342 - 381
Target Start/End: Complemental strand, 32091231 - 32091192
Alignment:
Q  342 tgagcttaactcaatttgtaaggataatgcataatatatg 381  Q
    |||||||||||||||| ||||||| |||||||||||||||    
T  32091231 tgagcttaactcaattggtaaggaaaatgcataatatatg 32091192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 335 - 381
Target Start/End: Original strand, 7640652 - 7640698
Alignment:
Q  335 gtccccatgagcttaactcaatttgtaaggataatgcataatatatg 381  Q
    |||||| |||||||||||||||| ||||||| ||| |||||||||||    
T  7640652 gtccccgtgagcttaactcaattggtaaggacaatacataatatatg 7640698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 335 - 381
Target Start/End: Complemental strand, 40099450 - 40099404
Alignment:
Q  335 gtccccatgagcttaactcaatttgtaaggataatgcataatatatg 381  Q
    ||||||||||||||| |||| || ||||||| |||||||||||||||    
T  40099450 gtccccatgagcttagctcagttggtaaggacaatgcataatatatg 40099404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 336 - 381
Target Start/End: Original strand, 10991537 - 10991582
Alignment:
Q  336 tccccatgagcttaactcaatttgtaaggataatgcataatatatg 381  Q
    ||||||||||||||||||| || ||||||| ||| |||||||||||    
T  10991537 tccccatgagcttaactcagttggtaaggacaatacataatatatg 10991582  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 333 - 381
Target Start/End: Original strand, 11560490 - 11560538
Alignment:
Q  333 tagtccccatgagcttaactcaatttgtaaggataatgcataatatatg 381  Q
    |||||| |||||||||| ||||||| ||| ||| |||||||||||||||    
T  11560490 tagtcctcatgagcttagctcaattggtagggacaatgcataatatatg 11560538  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 335 - 381
Target Start/End: Original strand, 31092655 - 31092701
Alignment:
Q  335 gtccccatgagcttaactcaatttgtaaggataatgcataatatatg 381  Q
    |||||||||| ||||||||| || |||||||||||||||||||||||    
T  31092655 gtccccatgaacttaactcatttggtaaggataatgcataatatatg 31092701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 342 - 381
Target Start/End: Original strand, 35473953 - 35473992
Alignment:
Q  342 tgagcttaactcaatttgtaaggataatgcataatatatg 381  Q
    |||||||| ||||||| |||||||||||||||||||||||    
T  35473953 tgagcttagctcaattggtaaggataatgcataatatatg 35473992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 342 - 381
Target Start/End: Complemental strand, 37944190 - 37944151
Alignment:
Q  342 tgagcttaactcaatttgtaaggataatgcataatatatg 381  Q
    |||||||| ||||||| |||||||||||||||||||||||    
T  37944190 tgagcttatctcaattggtaaggataatgcataatatatg 37944151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 342 - 381
Target Start/End: Complemental strand, 47719167 - 47719128
Alignment:
Q  342 tgagcttaactcaatttgtaaggataatgcataatatatg 381  Q
    ||||||||||||| || |||||||||||||||||||||||    
T  47719167 tgagcttaactcagttggtaaggataatgcataatatatg 47719128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 335 - 381
Target Start/End: Complemental strand, 64745 - 64699
Alignment:
Q  335 gtccccatgagcttaactcaatttgtaaggataatgcataatatatg 381  Q
    |||| ||||| |||||||||||| ||||||| |||||||||||||||    
T  64745 gtcctcatgaacttaactcaattagtaaggacaatgcataatatatg 64699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 335 - 381
Target Start/End: Original strand, 1408429 - 1408475
Alignment:
Q  335 gtccccatgagcttaactcaatttgtaaggataatgcataatatatg 381  Q
    |||||||| ||||||||||| || ||||||| |||||||||||||||    
T  1408429 gtccccataagcttaactcagttggtaaggacaatgcataatatatg 1408475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 335 - 381
Target Start/End: Complemental strand, 9639884 - 9639838
Alignment:
Q  335 gtccccatgagcttaactcaatttgtaaggataatgcataatatatg 381  Q
    |||||| ||||||||||||| || ||||||| |||||||||||||||    
T  9639884 gtccccgtgagcttaactcacttggtaaggacaatgcataatatatg 9639838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 334 - 380
Target Start/End: Original strand, 27127217 - 27127263
Alignment:
Q  334 agtccccatgagcttaactcaatttgtaaggataatgcataatatat 380  Q
    ||||| |||||||||| |||| || ||||||||||||||||||||||    
T  27127217 agtcctcatgagcttagctcagttagtaaggataatgcataatatat 27127263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000006; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 332 - 381
Target Start/End: Original strand, 39914892 - 39914941
Alignment:
Q  332 ttagtccccatgagcttaactcaatttgtaaggataatgcataatatatg 381  Q
    ||||||| | |||||||||||||||| ||||||| |||||||||||||||    
T  39914892 ttagtccgcgtgagcttaactcaattggtaaggacaatgcataatatatg 39914941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 332 - 381
Target Start/End: Original strand, 27679489 - 27679538
Alignment:
Q  332 ttagtccccatgagcttaactcaatttgtaaggataatgcataatatatg 381  Q
    ||||||||| |||||||| |||| || |||| ||||||||||||||||||    
T  27679489 ttagtccccgtgagcttagctcagttggtaaagataatgcataatatatg 27679538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 342 - 382
Target Start/End: Original strand, 34702491 - 34702531
Alignment:
Q  342 tgagcttaactcaatttgtaaggataatgcataatatatga 382  Q
    ||||||||||||| || ||||||| ||||||||||||||||    
T  34702491 tgagcttaactcagttggtaaggacaatgcataatatatga 34702531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0533 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0533
Description:

Target: scaffold0533; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 342 - 381
Target Start/End: Complemental strand, 8911 - 8872
Alignment:
Q  342 tgagcttaactcaatttgtaaggataatgcataatatatg 381  Q
    |||||||||||||||| ||||||| |||||||||||||||    
T  8911 tgagcttaactcaattggtaaggacaatgcataatatatg 8872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.000000009; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 342 - 381
Target Start/End: Original strand, 9977058 - 9977097
Alignment:
Q  342 tgagcttaactcaatttgtaaggataatgcataatatatg 381  Q
    |||||||||||||||| ||| |||||||||||||||||||    
T  9977058 tgagcttaactcaattggtatggataatgcataatatatg 9977097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 342 - 380
Target Start/End: Original strand, 11713667 - 11713705
Alignment:
Q  342 tgagcttaactcaatttgtaaggataatgcataatatat 380  Q
    ||||||||| |||||| ||||||||||||||||||||||    
T  11713667 tgagcttaaatcaattggtaaggataatgcataatatat 11713705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 340 - 381
Target Start/End: Original strand, 6503259 - 6503300
Alignment:
Q  340 catgagcttaactcaatttgtaaggataatgcataatatatg 381  Q
    ||||||||||||||||||  ||||||||||| ||||||||||    
T  6503259 catgagcttaactcaattgttaaggataatgtataatatatg 6503300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 333 - 381
Target Start/End: Complemental strand, 3808187 - 3808139
Alignment:
Q  333 tagtccccatgagcttaactcaatttgtaaggataatgcataatatatg 381  Q
    |||||||| ||| ||||||||| || ||||||| |||||||||||||||    
T  3808187 tagtccccgtgaacttaactcagttagtaaggacaatgcataatatatg 3808139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.000000009; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 334 - 381
Target Start/End: Original strand, 27537741 - 27537788
Alignment:
Q  334 agtccccatgagcttaactcaatttgtaaggataatgcataatatatg 381  Q
    ||||| |||||||||||||||||| ||| ||| |||||||||||||||    
T  27537741 agtcctcatgagcttaactcaattggtatggacaatgcataatatatg 27537788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 335 - 381
Target Start/End: Original strand, 29910455 - 29910501
Alignment:
Q  335 gtccccatgagcttaactcaatttgtaaggataatgcataatatatg 381  Q
    |||||| ||||||||||||||||  |||||| |||||||||||||||    
T  29910455 gtccccgtgagcttaactcaattgataaggacaatgcataatatatg 29910501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 335 - 381
Target Start/End: Complemental strand, 46676565 - 46676519
Alignment:
Q  335 gtccccatgagcttaactcaatttgtaaggataatgcataatatatg 381  Q
    ||||||||||||||| |||| || ||||||| |||||||||||||||    
T  46676565 gtccccatgagcttagctcagttggtaaggacaatgcataatatatg 46676519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 335 - 381
Target Start/End: Complemental strand, 56497675 - 56497629
Alignment:
Q  335 gtccccatgagcttaactcaatttgtaaggataatgcataatatatg 381  Q
    |||||| |||||||| ||||||| ||||||| |||||||||||||||    
T  56497675 gtccccgtgagcttagctcaattggtaaggacaatgcataatatatg 56497629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 342 - 380
Target Start/End: Complemental strand, 63680 - 63642
Alignment:
Q  342 tgagcttaactcaatttgtaaggataatgcataatatat 380  Q
    |||||||||||||||| ||| ||||||||||||||||||    
T  63680 tgagcttaactcaattggtatggataatgcataatatat 63642  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 335 - 381
Target Start/End: Complemental strand, 8984561 - 8984515
Alignment:
Q  335 gtccccatgagcttaactcaatttgtaaggataatgcataatatatg 381  Q
    |||||||||||||||||||| || ||| |||||||| ||||||||||    
T  8984561 gtccccatgagcttaactcagttggtatggataatgtataatatatg 8984515  T

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Target: scaffold0238 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0238
Description:

Target: scaffold0238; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 336 - 381
Target Start/End: Original strand, 25384 - 25429
Alignment:
Q  336 tccccatgagcttaactcaatttgtaaggataatgcataatatatg 381  Q
    ||||| ||||||||||||| || ||||||| |||||||||||||||    
T  25384 tccccgtgagcttaactcagttggtaaggacaatgcataatatatg 25429  T

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